Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	Q	E	E	R	F	E	Q	R	I	A	Q	E	T	A	I	E	P	Q	D	W	M	P	D	A	Y	R	K	T	L	I	R	Q	I	G	Q	H	A	H	S	E	I	V	G	M	L	P	E	G	N	W	I	T	R	A	P	T	L	R
Secondary structure
SS confidence
Disorder		?	?	?	?							?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	K	A	I	L	L	A	K	V	Q	D	E	A	G	H	G	L	Y	L	Y	S	A	A	E	T	L	G	C	A	R	E	D	I	Y	Q	K	M	L	D	G	R	M	K	Y	S	S	I	F	N	Y	P	T	L	S	W	A	D	I	G	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	G	W	L	V	D	G	A	A	I	V	N	Q	V	A	L	C	R	T	S	Y	G	P	Y	A	R	A	M	V	K	I	C	K	E	E	S	F	H	Q	R	Q	G	F	E	A	C	M	A	L	A	Q	G	S	E	A	Q	K	Q	M	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	D	A	I	N	R	F	W	W	P	A	L	M	M	F	G	P	N	D	D	N	S	P	N	S	A	R	S	L	T	W	K	I	K	R	F	T	N	D	E	L	R	Q	R	F	V	D	N	T	V	P	Q	V	E	M	L	G	M	T	V
Secondary structure
SS confidence
Disorder																				?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	D	P	D	L	H	F	D	T	E	S	G	H	Y	R	F	G	E	I	D	W	Q	E	F	N	E	V	I	N	G	R	G	I	C	N	Q	E	R	L	D	A	K	R	K	A	W	E	E	G	T	W	V	R	E	A	A	L	A	H	A
Secondary structure
SS confidence
Disorder					?		?	?	?		?	?	?	?	?	?														?	?	?	?	?	?	?									?	?	?	?	?	?	?								?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		Q	K	Q	H	A	R	K	V	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3pw1 chain A Region: 2 - 302 Aligned: 301 Modelled: 301 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: A: PDB Molecule:phenylacetic acid degradation protein paaa; PDBTitle: the phenylacetyl-coa monooxygenase paaac subcomplex with phenylacetyl-2 coa Phyre2 PDB 1otk chain A Region: 29 - 254 Aligned: 221 Modelled: 226 Confidence: 100.0% Identity: 18% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 3pm5 chain B Region: 21 - 223 Aligned: 201 Modelled: 203 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:benzoyl-coa oxygenase component b; PDBTitle: crystal structure of boxb in mixed valent state with bound benzoyl-coa Phyre2 PDB 3dhi chain A Region: 3 - 241 Aligned: 221 Modelled: 230 Confidence: 99.4% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 4-monooxygenase hydroxylase alpha subunit; PDBTitle: crystal structure of reduced toluene 4-monoxygenase hydroxylase2 complexed with effector protein Phyre2 PDB 2inc chain A domain 1 Region: 3 - 241 Aligned: 230 Modelled: 239 Confidence: 99.3% Identity: 13% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1mty chain D Region: 20 - 241 Aligned: 213 Modelled: 222 Confidence: 99.3% Identity: 15% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1mhy chain D Region: 21 - 241 Aligned: 214 Modelled: 215 Confidence: 99.0% Identity: 15% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 2inp chain D Region: 3 - 243 Aligned: 227 Modelled: 231 Confidence: 98.5% Identity: 14% PDB header:oxidoreductase Chain: D: PDB Molecule:phenol hydroxylase component phl; PDBTitle: structure of the phenol hydroxylase-regulatory protein2 complex Phyre2 PDB 1w68 chain A Region: 23 - 241 Aligned: 205 Modelled: 205 Confidence: 98.5% Identity: 10% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 2p1i chain A Region: 21 - 241 Aligned: 203 Modelled: 207 Confidence: 98.4% Identity: 10% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, small chain; PDBTitle: plasmodium yoelii ribonucleotide reductase subunit r2 (py03671) Phyre2 PDB 1h0o chain A Region: 21 - 241 Aligned: 207 Modelled: 207 Confidence: 98.4% Identity: 10% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase; PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state Phyre2 PDB 2inn chain A Region: 3 - 241 Aligned: 223 Modelled: 239 Confidence: 98.4% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:phenol hydroxylase component phn; PDBTitle: structure of the phenol hydroxyalse-regulatory protein2 complex Phyre2 PDB 1uzr chain A Region: 23 - 241 Aligned: 202 Modelled: 219 Confidence: 98.3% Identity: 12% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 3ee4 chain A Region: 21 - 194 Aligned: 174 Modelled: 174 Confidence: 98.3% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase; PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis Phyre2 PDB 2rcc chain C Region: 23 - 248 Aligned: 212 Modelled: 212 Confidence: 98.3% Identity: 14% PDB header:oxidoreductase Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta; PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution Phyre2 PDB 3dhz chain A domain 1 Region: 21 - 241 Aligned: 204 Modelled: 217 Confidence: 98.3% Identity: 12% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 2o1z chain A Region: 23 - 241 Aligned: 199 Modelled: 205 Confidence: 98.3% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase subunit r2; PDBTitle: plasmodium vivax ribonucleotide reductase subunit r22 (pv086155) Phyre2 PDB 2vux chain B Region: 23 - 241 Aligned: 194 Modelled: 205 Confidence: 98.2% Identity: 11% PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b; PDBTitle: human ribonucleotide reductase, subunit m2 b Phyre2 PDB 1sms chain A Region: 23 - 241 Aligned: 205 Modelled: 205 Confidence: 98.1% Identity: 9% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 3ez0 chain D Region: 25 - 192 Aligned: 156 Modelled: 168 Confidence: 98.1% Identity: 16% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein with ferritin-like fold; PDBTitle: crystal structure of protein of unknown function with ferritin-like2 fold (yp_832262.1) from arthrobacter sp. fb24 at 2.33 a resolution Phyre2 1 c3pw1A_ 2 d1otka_ 3 c3pm5B_ 4 c3dhiA_ 5 d2inca1 6 d1mtyd_ 7 d1mhyd_ 8 c2inpD_ 9 d1w68a_ 10 c2p1iA_ 11 c1h0oA_ 12 c2innA_ 13 d1uzra_ 14 c3ee4A_ 15 c2rccC_ 16 d3dhza1 17 c2o1zA_ 18 c2vuxB_ 19 d1smsa_ 20 c3ez0D_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3pw1A_ 100.0 100 PDB header:oxidoreductase Chain: A: PDB Molecule:phenylacetic acid degradation protein paaa; PDBTitle: the phenylacetyl-coa monooxygenase paaac subcomplex with phenylacetyl-2 coa 2 d1otka_ 100.0 18 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 3 c3pm5B_ 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:benzoyl-coa oxygenase component b; PDBTitle: crystal structure of boxb in mixed valent state with bound benzoyl-coa 4 c3dhiA_ 99.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 4-monooxygenase hydroxylase alpha subunit; PDBTitle: crystal structure of reduced toluene 4-monoxygenase hydroxylase2 complexed with effector protein 5 d2inca1 99.3 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 6 d1mtyd_ 99.3 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 7 d1mhyd_ 99.0 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 8 c2inpD_ 98.5 14 PDB header:oxidoreductase Chain: D: PDB Molecule:phenol hydroxylase component phl; PDBTitle: structure of the phenol hydroxylase-regulatory protein2 complex 9 d1w68a_ 98.5 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 10 c2p1iA_ 98.4 10 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, small chain; PDBTitle: plasmodium yoelii ribonucleotide reductase subunit r2 (py03671) 11 c1h0oA_ 98.4 10 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase; PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state 12 c2innA_ 98.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:phenol hydroxylase component phn; PDBTitle: structure of the phenol hydroxyalse-regulatory protein2 complex 13 d1uzra_ 98.3 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 14 c3ee4A_ 98.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase; PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis 15 c2rccC_ 98.3 14 PDB header:oxidoreductase Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta; PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution 16 d3dhza1 98.3 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 17 c2o1zA_ 98.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase subunit r2; PDBTitle: plasmodium vivax ribonucleotide reductase subunit r22 (pv086155) 18 c2vuxB_ 98.2 11 PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b; PDBTitle: human ribonucleotide reductase, subunit m2 b 19 d1smsa_ 98.1 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 20 c3ez0D_ 98.1 16 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein with ferritin-like fold; PDBTitle: crystal structure of protein of unknown function with ferritin-like2 fold (yp_832262.1) from arthrobacter sp. fb24 at 2.33 a resolution 21 c3dhgB_ not modelled 98.1 11 PDB header:oxidoreductase Chain: B: PDB Molecule:toluene 4-monooxygenase hydroxylase beta subunit; PDBTitle: crystal struture of toluene 4-monoxygenase hydroxylase 22 c3hf1B_ not modelled 98.1 12 PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 PDBTitle: crystal structure of human p53r2 23 d1syya_ not modelled 98.1 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 24 c1syyA_ not modelled 98.1 13 PDB header:replication,oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase beta chain; PDBTitle: crystal structure of the r2 subunit of ribonucleotide reductase from2 chlamydia trachomatis 25 d2incb1 not modelled 98.0 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 26 d2oc5a1 not modelled 98.0 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:PMT1231-like 27 d1oquc_ not modelled 97.9 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 28 c1yfdA_ not modelled 97.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 1 beta PDBTitle: crystal structure of the y122h mutant of ribonucleotide2 reductase r2 protein from e. coli 29 d1r2fa_ not modelled 97.9 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 30 d1jk0a_ not modelled 97.8 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 31 d2fzfa1 not modelled 97.8 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 32 d1mxra_ not modelled 97.7 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 33 c1r2fB_ not modelled 97.7 13 PDB header:oxidoreductase Chain: B: PDB Molecule:protein (ribonucleotide reductase r2); PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium 34 d1mhyb_ not modelled 97.5 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 35 c1smqD_ not modelled 97.5 14 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase small chain PDBTitle: structure of the ribonucleotide reductase rnr2 homodimer2 from saccharomyces cerevisiae 36 d2itba1 not modelled 96.7 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:MiaE-like 37 d1jk0b_ not modelled 96.6 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 38 d1rcwa_ not modelled 96.0 11 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:PqqC-like 39 d1afra_ not modelled 95.9 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 40 d1vjxa_ not modelled 95.3 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 41 c3gvyC_ not modelled 95.1 10 PDB header:metal binding protein Chain: C: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of bacterioferritin from r.sphaeroides 42 d1jgca_ not modelled 95.0 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 43 d1lkoa1 not modelled 94.3 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 44 c3ddeB_ not modelled 94.3 11 PDB header:unknown function Chain: B: PDB Molecule:tena/thi-4 protein, domain of unknown function with a heme PDBTitle: crystal structure of a domain of unknown function with a heme2 oxygenase-like fold (sden_3740) from shewanella denitrificans os2173 at 2.30 a resolution 45 d1jkva_ not modelled 94.2 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 46 c2vzbA_ not modelled 93.9 13 PDB header:metal transport Chain: A: PDB Molecule:putative bacterioferritin-related protein; PDBTitle: a dodecameric thioferritin in the bacterial domain, characterization2 of the bacterioferritin-related protein from bacteroides fragilis 47 c3oqlB_ not modelled 93.6 12 PDB header:transcription Chain: B: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 48 c2clbP_ not modelled 93.5 13 PDB header:metal binding protein Chain: P: PDB Molecule:dps-like protein; PDBTitle: the structure of the dps-like protein from sulfolobus2 solfataricus reveals a bacterioferritin-like di-metal3 binding site within a dps-like dodecameric assembly 49 d1j30a_ not modelled 93.0 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 50 d1nf4a_ not modelled 92.8 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 51 c3bjdA_ not modelled 92.6 11 PDB header:transferase Chain: A: PDB Molecule:putative 3-oxoacyl-(acyl-carrier-protein) synthase; PDBTitle: crystal structure of putative 3-oxoacyl-(acyl-carrier-protein)2 synthase from pseudomonas aeruginosa 52 d2oh3a1 not modelled 92.5 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:AMB4284-like 53 d2fkza1 not modelled 92.3 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 54 c3bknB_ not modelled 92.1 10 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: the structure of mycobacterial bacterioferritin 55 d1za0a1 not modelled 91.9 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 56 c3fvbB_ not modelled 91.1 9 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of ferritin (bacterioferritin) from2 brucella melitensis 57 d2htna1 not modelled 91.0 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 58 c2qqyA_ not modelled 90.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma b operon; PDBTitle: crystal structure of ferritin like, diiron-carboxylate proteins from2 bacillus anthracis str. ames 59 c2rd3A_ not modelled 89.8 10 PDB header:hydrolase Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of tena homologue (hp1287) from2 helicobacter pylori 60 c2qcxA_ not modelled 89.8 9 PDB header:hydrolase Chain: A: PDB Molecule:transcriptional activator tena; PDBTitle: crystal structure of bacillus subtilis tena y112f mutant complexed2 with formyl aminomethyl pyrimidine 61 d1otva_ not modelled 87.8 14 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:PqqC-like 62 d1nnqa1 not modelled 87.4 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 63 c3chtA_ not modelled 84.2 17 PDB header:oxidoreductase Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase; PDBTitle: crystal structure of di-iron aurf with partially bound ligand 64 c3oqlA_ not modelled 81.7 13 PDB header:transcription Chain: A: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 65 c2yumA_ not modelled 81.6 13 PDB header:transcription Chain: A: PDB Molecule:zinc finger zz-type-containing protein 3; PDBTitle: solution structure of the myb-like dna-binding domain of2 human zzz3 protein 66 c3qhbA_ not modelled 80.7 15 PDB header:metal transport Chain: A: PDB Molecule:symerythrin; PDBTitle: crystal structure of oxidized symerythrin from cyanophora paradoxa 67 d2gm8a1 not modelled 79.8 12 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 68 d1z72a1 not modelled 78.6 14 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 69 c1dvbA_ not modelled 75.3 13 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 70 c3q4nA_ not modelled 74.1 13 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0754; PDBTitle: crystal structure of hypothetical protein mj0754 from methanococcus2 jannaschii dsm 2661 71 c3e6sD_ not modelled 71.4 12 PDB header:oxidoreductase Chain: D: PDB Molecule:ferritin; PDBTitle: crystal structure of ferritin soaked with iron from pseudo-2 nitzschia multiseries 72 d1zpya1 not modelled 71.1 19 Fold:Ferritin-like Superfamily:Ferritin-like Family:half-ferritin 73 c3r2rA_ not modelled 70.9 8 PDB header:metal binding protein Chain: A: PDB Molecule:bacterioferritin; PDBTitle: 1.65a resolution structure of iron soaked ftna from pseudomonas2 aeruginosa (ph 6.0) 74 c2hr5B_ not modelled 69.8 14 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 75 d1yv1a1 not modelled 66.1 8 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 76 c3oghB_ not modelled 65.0 8 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ycie; PDBTitle: crystal structure of ycie protein from e. coli cft073, a member of2 ferritine-like superfamily of diiron-containing four-helix-bundle3 proteins 77 d1mtyb_ not modelled 64.9 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 78 d2cwla1 not modelled 64.5 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 79 d1yuza1 not modelled 64.2 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 80 c1to9A_ not modelled 58.3 10 PDB header:biosynthetic protein Chain: A: PDB Molecule:thi-4 protein; PDBTitle: crystal structure of thi-4 protein from bacillus subtilis 81 d1to9a_ not modelled 58.3 10 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 82 c3no6B_ not modelled 53.9 10 PDB header:hydrolase Chain: B: PDB Molecule:transcriptional activator tena; PDBTitle: crystal structure of a putative thiaminase ii (se1693) from2 staphylococcus epidermidis atcc 12228 at 1.65 a resolution 83 d1vlga_ not modelled 52.2 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 84 d1udda_ not modelled 52.2 7 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 85 c3d01G_ not modelled 38.9 25 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the protein atu1372 with unknown function from2 agrobacterium tumefaciens 86 c3bvkC_ not modelled 36.9 8 PDB header:oxidoreductase Chain: C: PDB Molecule:ferritin; PDBTitle: structural basis for the iron uptake mechanism of helicobacter pylori2 ferritin 87 d1v29a_ not modelled 32.3 26 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 88 d2qdya1 not modelled 29.0 23 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 89 c3k4tB_ not modelled 28.8 38 PDB header:viral protein, dna-binding protein Chain: B: PDB Molecule:virion-associated protein; PDBTitle: crystal structure of the virion-associated protein p3 from2 caulimovirus 90 c3f6nA_ not modelled 28.8 38 PDB header:viral protein, dna-binding protein Chain: A: PDB Molecule:virion-associated protein; PDBTitle: crystal structure of the virion-associated protein p3 from2 caulimovirus 91 c2y69R_ not modelled 27.6 22 PDB header:electron transport Chain: R: PDB Molecule:cytochrome c oxidase subunit 5a; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 92 c3qyhG_ not modelled 27.0 15 PDB header:lyase Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida. 93 d1v54e_ not modelled 26.1 22 Fold:alpha-alpha superhelix Superfamily:Cytochrome c oxidase subunit E Family:Cytochrome c oxidase subunit E 94 c1rd6A_ not modelled 25.9 14 PDB header:hydrolase Chain: A: PDB Molecule:chitinase a; PDBTitle: crystal structure of s. marcescens chitinase a mutant w167a 95 d1ugpa_ not modelled 24.8 20 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 96 c1ponB_ not modelled 21.9 43 PDB header:calcium-binding protein Chain: B: PDB Molecule:troponin c; PDBTitle: site iii-site iv troponin c heterodimer, nmr 97 c3dx5A_ not modelled 19.8 14 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 98 c2k3jA_ not modelled 19.2 24 PDB header:oxidoreductase Chain: A: PDB Molecule:mitochondrial intermembrane space import and PDBTitle: the solution structure of human mia40 99 c3b9eA_ not modelled 18.6 14 PDB header:hydrolase Chain: A: PDB Molecule:chitinase a; PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0