Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	S	N	D	S	G	G	V	A	A	K	H	G	F	L	F	Q	D	C	V	A	A	Y	H	V	T	R	M	L	R	D	K	T	I	R	S	V	R	C	E	V	T	D	D	I	D	I	V	S	D	G	Y	I	D	F	V	Q	V	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	T	G	K	T	R	W	N	I	S	D	I	V	Q	N	S	K	G	A	D	K	K	T	I	P	C	S	S	I	L	H	K	S	M	Q	C	E	S	D	L	S	L	G	R	R	Y	S	I	V	T	E	E	K	V	N	K	T	L	E	Y
Secondary structure
SS confidence
Disorder						?									?	?	?	?	?	?	?	?	?	?	?	?	?	?				?						?	?	?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	T	I	S	P	N	A	R	L	D	K	P	G	R	Q	E	L	I	D	D	L	N	K	R	T	D	N	F	L	T	D	S	G	I	S	V	S	D	W	I	D	A	A	T	W	E	V	F	S	S	L	R	E	L	E	L	L	G	I	K
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?								?	?					?	?		?		?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		N	I	R	L	A	S	Q	D	L	H	G	V	I	L	S	S	E	T	V	A	E	D	I	W	C	R	I	L	D	T	V	T	R	K	G	E	H	S	R	R	I	H	S	A	D	D	K	S	Y	L	R	P	D	L	L	E	W	F	K	Q
Secondary structure
SS confidence
Disorder									?	?	?	?				?																				?	?	?				?			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	V	E	D	D	Q	S	R	S	G	R	K	I	Y	V	K	R	D	L	P	H	I	L	T	P	F	R	A	P	M	A	S	V	C	A	K	R	K	G	Q	V	L	H	Q	Q	Y	S	L	K	K	Y	R	Y	K	H	I	A	D	N	V
Secondary structure
SS confidence
Disorder							?	?	?					?					?	?		?	?	?																			?	?		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		C	Q	W	L	D	E	V	F	L	R	P	K	E	M	S	D	I	H	K	L	T	F	I	E	K	R	E	R	L	K	N	S	V	F	K	S	L	H	D	V	S	E	F	L	G	R	V	L	L	H	A	T	I	R	Q	H	H	E	S	Q
Secondary structure
SS confidence
Disorder																	?	?	?	?	?	?												?	?		?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		P	I	P	C	M	L	Y	V	E	K	A	G	A	E	K	I	L	E	N	V	H	I	V	R	R	D	P	E	G	D	Q	L	W	I	G	F	S	E	L	V	T	D	I	N	I	A	V	R	L	P	E	I	R	D	Q	L	Y	E	D	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		S	D	C	I	D	T	A	R	K	K	I	L	D	I	K	D	D	N	Y	L	L	R	H	D	I	D	E	I	L	D	G	S	Q	P	F	D	A	H	L	D	R	F	T	F	V	L	F	V	G	Y	D	S	N	L	L	T	E	P	E	T
Secondary structure
SS confidence
Disorder																	?	?	?	?	?													?	?																							?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Sequence		P	G	F	E	D	D	L	E	K	E	T	A	V	L	F	E	K	F	A	A	D	L	I	E	D	S	P	F	A	N	L	C	I	H	V	F	I	Y	P	A	P	S	L	E	R	L	T	Q	L	V	D	E	K	V	R	E	V	V
Secondary structure
SS confidence
Disorder																								?																																		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2j7j chain A domain 2 Region: 95 - 105 Aligned: 11 Modelled: 11 Confidence: 40.3% Identity: 36% Fold: beta-beta-alpha zinc fingers Superfamily: beta-beta-alpha zinc fingers Family: Classic zinc finger, C2H2 Phyre2 PDB 2c1h chain A domain 1 Region: 459 - 524 Aligned: 53 Modelled: 66 Confidence: 39.9% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) Phyre2 PDB 1l6s chain A Region: 459 - 524 Aligned: 53 Modelled: 57 Confidence: 35.9% Identity: 19% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) Phyre2 PDB 1wgw chain A Region: 107 - 166 Aligned: 60 Modelled: 60 Confidence: 23.7% Identity: 18% Fold: Four-helical up-and-down bundle Superfamily: Domain of the SRP/SRP receptor G-proteins Family: Domain of the SRP/SRP receptor G-proteins Phyre2 PDB 1x6v chain A domain 2 Region: 346 - 359 Aligned: 14 Modelled: 14 Confidence: 22.7% Identity: 21% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: ATP sulfurylase catalytic domain Phyre2 PDB 1e1h chain C Region: 364 - 419 Aligned: 55 Modelled: 56 Confidence: 21.1% Identity: 13% PDB header:hydrolase Chain: C: PDB Molecule:botulinum neurotoxin type a light chain; PDBTitle: crystal structure of recombinant botulinum neurotoxin type2 a light chain, self-inhibiting zn endopeptidase. Phyre2 PDB 1jhd chain A domain 2 Region: 346 - 359 Aligned: 14 Modelled: 14 Confidence: 19.0% Identity: 36% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: ATP sulfurylase catalytic domain Phyre2 PDB 1gef chain A Region: 45 - 66 Aligned: 22 Modelled: 22 Confidence: 18.7% Identity: 23% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 2py8 chain B Region: 294 - 333 Aligned: 38 Modelled: 40 Confidence: 18.7% Identity: 21% PDB header:chaperone Chain: B: PDB Molecule:hypothetical protein rbcx; PDBTitle: rbcx Phyre2 PDB 2peo chain A Region: 294 - 333 Aligned: 38 Modelled: 40 Confidence: 16.9% Identity: 16% PDB header:chaperone Chain: A: PDB Molecule:rbcx protein; PDBTitle: crystal structure of rbcx from anabaena ca Phyre2 PDB 2peo chain A domain 1 Region: 294 - 333 Aligned: 38 Modelled: 40 Confidence: 16.9% Identity: 16% Fold: RbcX-like Superfamily: RbcX-like Family: RbcX-like Phyre2 PDB 3gk7 chain A Region: 108 - 152 Aligned: 44 Modelled: 45 Confidence: 16.4% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum Phyre2 PDB 1ob8 chain A Region: 26 - 66 Aligned: 41 Modelled: 41 Confidence: 15.8% Identity: 22% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 2pt7 chain G Region: 320 - 361 Aligned: 42 Modelled: 42 Confidence: 14.4% Identity: 10% PDB header:hydrolase/protein binding Chain: G: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of cag virb11 (hp0525) and an inhibitory protein2 (hp1451) Phyre2 PDB 1jih chain A domain 1 Region: 90 - 191 Aligned: 99 Modelled: 102 Confidence: 14.1% Identity: 17% Fold: Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain Family: Lesion bypass DNA polymerase (Y-family), little finger domain Phyre2 PDB 2qjf chain B Region: 346 - 359 Aligned: 14 Modelled: 14 Confidence: 13.8% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'- PDBTitle: crystal structure of atp-sulfurylase domain of human paps2 synthetase 1 Phyre2 PDB 1v47 chain A domain 2 Region: 346 - 359 Aligned: 14 Modelled: 14 Confidence: 13.5% Identity: 21% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: ATP sulfurylase catalytic domain Phyre2 PDB 1c4k chain A domain 3 Region: 254 - 313 Aligned: 60 Modelled: 60 Confidence: 13.1% Identity: 18% Fold: Ornithine decarboxylase C-terminal domain Superfamily: Ornithine decarboxylase C-terminal domain Family: Ornithine decarboxylase C-terminal domain Phyre2 PDB 1gzg chain A Region: 459 - 525 Aligned: 54 Modelled: 58 Confidence: 13.1% Identity: 24% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) Phyre2 PDB 1vzv chain A Region: 294 - 310 Aligned: 17 Modelled: 17 Confidence: 12.9% Identity: 24% Fold: Herpes virus serine proteinase, assemblin Superfamily: Herpes virus serine proteinase, assemblin Family: Herpes virus serine proteinase, assemblin Phyre2 1 d2j7ja2 2 d2c1ha1 3 d1l6sa_ 4 d1wgwa_ 5 d1x6va2 6 c1e1hC_ 7 d1jhda2 8 d1gefa_ 9 c2py8B_ 10 c2peoA_ 11 d2peoa1 12 c3gk7A_ 13 d1ob8a_ 14 c2pt7G_ 15 d1jiha1 16 c2qjfB_ 17 d1v47a2 18 d1c4ka3 19 d1gzga_ 20 d1vzva_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2j7ja2 40.3 36 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 2 d2c1ha1 39.9 25 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 3 d1l6sa_ 35.9 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 4 d1wgwa_ 23.7 18 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 5 d1x6va2 22.7 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 6 c1e1hC_ 21.1 13 PDB header:hydrolase Chain: C: PDB Molecule:botulinum neurotoxin type a light chain; PDBTitle: crystal structure of recombinant botulinum neurotoxin type2 a light chain, self-inhibiting zn endopeptidase. 7 d1jhda2 19.0 36 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 8 d1gefa_ 18.7 23 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 9 c2py8B_ 18.7 21 PDB header:chaperone Chain: B: PDB Molecule:hypothetical protein rbcx; PDBTitle: rbcx 10 c2peoA_ 16.9 16 PDB header:chaperone Chain: A: PDB Molecule:rbcx protein; PDBTitle: crystal structure of rbcx from anabaena ca 11 d2peoa1 16.9 16 Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like 12 c3gk7A_ 16.4 18 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum 13 d1ob8a_ 15.8 22 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 14 c2pt7G_ 14.4 10 PDB header:hydrolase/protein binding Chain: G: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of cag virb11 (hp0525) and an inhibitory protein2 (hp1451) 15 d1jiha1 14.1 17 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 16 c2qjfB_ 13.8 21 PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'- PDBTitle: crystal structure of atp-sulfurylase domain of human paps2 synthetase 1 17 d1v47a2 13.5 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 18 d1c4ka3 13.1 18 Fold:Ornithine decarboxylase C-terminal domain Superfamily:Ornithine decarboxylase C-terminal domain Family:Ornithine decarboxylase C-terminal domain 19 d1gzga_ 13.1 24 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 20 d1vzva_ 12.9 24 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 21 c1xnjB_ not modelled 12.5 21 PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate PDBTitle: aps complex of human paps synthetase 1 22 c2kmgA_ not modelled 12.2 23 PDB header:gene regulation Chain: A: PDB Molecule:klca; PDBTitle: the structure of the klca and ardb proteins show a novel2 fold and antirestriction activity against type i dna3 restriction systems in vivo but not in vitro 23 c1jhdA_ not modelled 12.0 36 PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase; PDBTitle: crystal structure of bacterial atp sulfurylase from the2 riftia pachyptila symbiont 24 d1k8ke_ not modelled 11.8 17 Fold:Arp2/3 complex 21 kDa subunit ARPC3 Superfamily:Arp2/3 complex 21 kDa subunit ARPC3 Family:Arp2/3 complex 21 kDa subunit ARPC3 25 c3ulxA_ not modelled 11.7 40 PDB header:dna binding protein Chain: A: PDB Molecule:stress-induced transcription factor nac1; PDBTitle: crystal structural of the conserved domain of rice stress-responsive2 nac1 26 d1wiia_ not modelled 11.7 67 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 27 d1j8yf1 not modelled 11.5 15 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 28 d2olra2 not modelled 11.0 23 Fold:PEP carboxykinase N-terminal domain Superfamily:PEP carboxykinase N-terminal domain Family:PEP carboxykinase N-terminal domain 29 d1ls1a1 not modelled 10.3 13 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 30 d1qzxa1 not modelled 10.3 15 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 31 d1m8pa2 not modelled 10.1 36 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 32 c2gjvF_ not modelled 10.0 10 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative cytoplasmic protein; PDBTitle: crystal structure of a protein of unknown function from salmonella2 typhimurium 33 c3ka1A_ not modelled 10.0 18 PDB header:chaperone Chain: A: PDB Molecule:rbcx protein; PDBTitle: crystal structure of rbcx from thermosynechococcus elongatus 34 c1v47B_ not modelled 9.9 21 PDB header:transferase Chain: B: PDB Molecule:atp sulfurylase; PDBTitle: crystal structure of atp sulfurylase from thermus2 thermophillus hb8 in complex with aps 35 d2gjva1 not modelled 9.8 10 Fold:Phage tail protein-like Superfamily:Phage tail protein-like Family:STM4215-like 36 d1j3ba2 not modelled 9.8 26 Fold:PEP carboxykinase N-terminal domain Superfamily:PEP carboxykinase N-terminal domain Family:PEP carboxykinase N-terminal domain 37 c2wj0B_ not modelled 9.7 15 PDB header:hydrolase/dna Chain: B: PDB Molecule:archaeal hjc; PDBTitle: crystal structures of holliday junction resolvases from2 archaeoglobus fulgidus bound to dna substrate 38 d1g8fa2 not modelled 9.3 29 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 39 d1na6a2 not modelled 9.0 22 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Type II restriction endonuclease catalytic domain 40 d1at3a_ not modelled 8.7 21 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 41 c2o9xA_ not modelled 8.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:reductase, assembly protein; PDBTitle: crystal structure of a putative redox enzyme maturation protein from2 archaeoglobus fulgidus 42 c1r6xA_ not modelled 8.5 29 PDB header:transferase Chain: A: PDB Molecule:atp:sulfate adenylyltransferase; PDBTitle: the crystal structure of a truncated form of yeast atp2 sulfurylase, lacking the c-terminal aps kinase-like domain,3 in complex with sulfate 43 d1jq6a_ not modelled 8.3 6 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 44 d2gtad1 not modelled 8.1 20 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 45 d1jixa_ not modelled 7.7 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:beta-Glucosyltransferase (DNA-modifying) 46 c1g8gB_ not modelled 7.6 29 PDB header:transferase Chain: B: PDB Molecule:sulfate adenylyltransferase; PDBTitle: atp sulfurylase from s. cerevisiae: the binary product complex with2 aps 47 d1snna_ not modelled 7.5 19 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 48 d2ipqx1 not modelled 7.0 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:STY4665 C-terminal domain-like 49 d1kn6a_ not modelled 6.9 22 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Prohormone convertase 1 pro-domain 50 d2pbka1 not modelled 6.8 18 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 51 d1afpa_ not modelled 6.5 28 Fold:Antifungal protein (AGAFP) Superfamily:Antifungal protein (AGAFP) Family:Antifungal protein (AGAFP) 52 d1xg8a_ not modelled 6.5 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:YuzD-like 53 d1ztpa1 not modelled 6.4 12 Fold:eIF4e-like Superfamily:eIF4e-like Family:BLES03-like 54 d1iega_ not modelled 6.3 6 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 55 d2p41a1 not modelled 6.2 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:mRNA cap methylase 56 d1ahsa_ not modelled 6.2 20 Fold:Viral protein domain Superfamily:Viral protein domain Family:Top domain of virus capsid protein 57 d1o6ea_ not modelled 5.9 18 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 58 c1p4qA_ not modelled 5.8 44 PDB header:transcription/transferase Chain: A: PDB Molecule:cbp/p300-interacting transactivator 2; PDBTitle: solution structure of the cited2 transactivation domain in2 complex with the p300 ch1 domain 59 c2pf4E_ not modelled 5.8 12 PDB header:hydrolase regulator/viral protein Chain: E: PDB Molecule:small t antigen; PDBTitle: crystal structure of the full-length simian virus 40 small t antigen2 complexed with the protein phosphatase 2a aalpha subunit 60 d1k0ia2 not modelled 5.8 13 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:PHBH-like 61 c3njqB_ not modelled 5.7 18 PDB header:viral protein/inhibitor Chain: B: PDB Molecule:orf 17; PDBTitle: crystal structure of kaposi's sarcoma-associated herpesvirus protease2 in complex with dimer disruptor 62 d1knwa2 not modelled 5.5 9 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 63 c2gutA_ not modelled 5.5 8 PDB header:transcription Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q- PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105 64 c3cr8C_ not modelled 5.5 21 PDB header:transferase Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate PDBTitle: hexameric aps kinase from thiobacillus denitrificans 65 c2nw0B_ not modelled 5.5 15 PDB header:hydrolase Chain: B: PDB Molecule:plyb; PDBTitle: crystal structure of a lysin 66 d1pv8a_ not modelled 5.4 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 67 c3p0sA_ not modelled 5.4 53 PDB header:virus Chain: A: PDB Molecule:capsid protein vp; PDBTitle: crystal structure of bombyx mori densovirus 1 capsid 68 d1olta_ not modelled 5.3 17 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN 69 c2gksB_ not modelled 5.3 29 PDB header:transferase Chain: B: PDB Molecule:bifunctional sat/aps kinase; PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile 70 d1k4ia_ not modelled 5.2 32 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB 71 c3lhiA_ not modelled 5.2 13 PDB header:hydrolase Chain: A: PDB Molecule:putative 6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution 72 d2vgna3 not modelled 5.2 17 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 73 c3letB_ not modelled 5.1 6 PDB header:transferase Chain: B: PDB Molecule:adenosine monophosphate-protein transferase vops; PDBTitle: crystal structure of fic domain containing ampylator, vops

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0