Secondary structure and disorder prediction

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Sequence		M	Y	V	C	L	C	N	G	I	S	D	K	K	I	R	Q	A	V	R	Q	F	S	P	H	S	F	Q	Q	L	K	K	F	I	P	V	G	N	Q	C	G	K	C	V	R	A	A	R	E	V	M	E	D	E	L	M	Q	L	P	E	F
Secondary structure
SS confidence
Disorder		?			?	?																		?																																			?	?
Disorder confidence
		.	.	.	.
Sequence		K	E	S	A
Secondary structure
SS confidence
Disorder			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1y56 chain A Region: 1 - 59 Aligned: 57 Modelled: 59 Confidence: 98.8% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1363; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii Phyre2 PDB 1x31 chain A Region: 2 - 57 Aligned: 55 Modelled: 56 Confidence: 98.5% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 Phyre2 PDB 2rgh chain A Region: 1 - 62 Aligned: 62 Modelled: 62 Confidence: 97.6% Identity: 6% PDB header:oxidoreductase Chain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase Phyre2 PDB 2hu9 chain B Region: 2 - 49 Aligned: 45 Modelled: 48 Confidence: 97.5% Identity: 24% PDB header:metal transport Chain: B: PDB Molecule:mercuric transport protein periplasmic component; PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain Phyre2 PDB 3da1 chain A Region: 3 - 62 Aligned: 60 Modelled: 60 Confidence: 97.0% Identity: 10% PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167. Phyre2 PDB 2rgo chain A Region: 3 - 59 Aligned: 57 Modelled: 57 Confidence: 96.9% Identity: 7% PDB header:oxidoreductase Chain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase Phyre2 PDB 2r4j chain A Region: 2 - 59 Aligned: 55 Modelled: 58 Confidence: 94.4% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap Phyre2 PDB 1fe0 chain A Region: 33 - 52 Aligned: 20 Modelled: 20 Confidence: 43.5% Identity: 30% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1i1g chain A domain 1 Region: 11 - 52 Aligned: 40 Modelled: 40 Confidence: 38.3% Identity: 15% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Lrp/AsnC-like transcriptional regulator N-terminal domain Phyre2 PDB 2kt2 chain A Region: 36 - 52 Aligned: 17 Modelled: 17 Confidence: 37.5% Identity: 29% PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase Phyre2 PDB 3fry chain B Region: 36 - 52 Aligned: 17 Modelled: 17 Confidence: 37.0% Identity: 29% PDB header:hydrolase Chain: B: PDB Molecule:probable copper-exporting p-type atpase a; PDBTitle: crystal structure of the copa c-terminal metal binding domain Phyre2 PDB 1cpz chain A Region: 36 - 52 Aligned: 17 Modelled: 17 Confidence: 32.1% Identity: 29% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2k2p chain A Region: 36 - 52 Aligned: 17 Modelled: 17 Confidence: 31.7% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 Phyre2 PDB 2kkh chain A Region: 36 - 52 Aligned: 17 Modelled: 17 Confidence: 29.4% Identity: 18% PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 Phyre2 PDB 1yg0 chain A Region: 36 - 52 Aligned: 17 Modelled: 17 Confidence: 28.6% Identity: 18% PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori Phyre2 PDB 1mwz chain A Region: 36 - 52 Aligned: 17 Modelled: 17 Confidence: 28.4% Identity: 24% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2rog chain A Region: 36 - 52 Aligned: 17 Modelled: 17 Confidence: 28.3% Identity: 29% PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells Phyre2 PDB 1sb6 chain A Region: 36 - 52 Aligned: 17 Modelled: 17 Confidence: 27.6% Identity: 18% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1s6u chain A Region: 36 - 52 Aligned: 17 Modelled: 17 Confidence: 27.2% Identity: 18% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1y3k chain A Region: 36 - 52 Aligned: 17 Modelled: 17 Confidence: 26.8% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein Phyre2 1 c1y56A_ 2 c1x31A_ 3 c2rghA_ 4 c2hu9B_ 5 c3da1A_ 6 c2rgoA_ 7 c2r4jA_ 8 d1fe0a_ 9 d1i1ga1 10 c2kt2A_ 11 c3fryB_ 12 d1cpza_ 13 c2k2pA_ 14 c2kkhA_ 15 c1yg0A_ 16 d1mwza_ 17 c2rogA_ 18 d1sb6a_ 19 d1s6ua_ 20 c1y3kA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1y56A_ 98.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1363; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii 2 c1x31A_ 98.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 3 c2rghA_ 97.6 6 PDB header:oxidoreductase Chain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase 4 c2hu9B_ 97.5 24 PDB header:metal transport Chain: B: PDB Molecule:mercuric transport protein periplasmic component; PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain 5 c3da1A_ 97.0 10 PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167. 6 c2rgoA_ 96.9 7 PDB header:oxidoreductase Chain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase 7 c2r4jA_ 94.4 11 PDB header:oxidoreductase Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap 8 d1fe0a_ 43.5 30 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 9 d1i1ga1 38.3 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 10 c2kt2A_ 37.5 29 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 11 c3fryB_ 37.0 29 PDB header:hydrolase Chain: B: PDB Molecule:probable copper-exporting p-type atpase a; PDBTitle: crystal structure of the copa c-terminal metal binding domain 12 d1cpza_ 32.1 29 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 13 c2k2pA_ 31.7 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 14 c2kkhA_ 29.4 18 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 15 c1yg0A_ 28.6 18 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 16 d1mwza_ 28.4 24 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 17 c2rogA_ 28.3 29 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 18 d1sb6a_ 27.6 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 19 d1s6ua_ 27.2 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 20 c1y3kA_ 26.8 24 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 21 c2kyzA_ not modelled 26.6 18 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 22 d2cfxa1 not modelled 26.3 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 23 d1afia_ not modelled 24.7 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 24 c2ga7A_ not modelled 24.2 24 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 25 d1osda_ not modelled 24.0 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 26 d2aw0a_ not modelled 23.7 29 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 27 c3dxsX_ not modelled 23.6 18 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 28 c1yjrA_ not modelled 23.3 24 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 29 d2cyya1 not modelled 23.2 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 30 c2aj1A_ not modelled 23.0 19 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 31 c2gcfA_ not modelled 22.9 18 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 32 d1q8la_ not modelled 22.4 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 33 d1qupa2 not modelled 21.3 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 34 d1p6ta2 not modelled 21.0 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 35 d2ggpb1 not modelled 20.9 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 36 d2cg4a1 not modelled 20.7 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 37 c2ofhX_ not modelled 20.5 24 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 38 d1szpb1 not modelled 20.0 19 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 39 c2ew9A_ not modelled 19.5 24 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of apowln5-6 40 d1nera_ not modelled 19.2 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 41 d1p6ta1 not modelled 18.1 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 42 d1t3qa1 not modelled 17.7 25 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 43 d1szpa1 not modelled 17.6 15 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 44 d1kvja_ not modelled 17.5 24 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 45 d1ffva1 not modelled 17.4 29 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 46 d1zxia1 not modelled 17.1 29 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 47 c1wygA_ not modelled 16.9 56 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 48 d1n62a1 not modelled 16.6 29 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 49 d1dgja1 not modelled 16.5 21 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 50 d1v97a1 not modelled 15.8 38 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 51 d1cc8a_ not modelled 15.7 26 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 52 d2qifa1 not modelled 15.7 29 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 53 d1jroa1 not modelled 15.1 25 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 54 c2ropA_ not modelled 15.0 31 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of domains 3 and 4 of human atp7b 55 c2ldiA_ not modelled 14.9 24 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 56 c2l3mA_ not modelled 14.2 35 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 57 c1ffuA_ not modelled 14.1 29 PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 58 c1ep3B_ not modelled 13.7 33 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. 59 c2l4aA_ not modelled 13.5 19 PDB header:dna binding protein Chain: A: PDB Molecule:leucine responsive regulatory protein; PDBTitle: nmr structure of the dna-binding domain of e.coli lrp 60 c2rmlA_ not modelled 13.1 20 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting p-type atpase copa; PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa 61 d1s05a_ not modelled 13.0 22 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 62 d1xn7a_ not modelled 12.6 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein YhgG 63 c1rm6F_ not modelled 12.5 33 PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 64 c3eubJ_ not modelled 12.2 38 PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine 65 d1jmsa3 not modelled 12.1 12 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 66 c3b9jI_ not modelled 11.9 38 PDB header:oxidoreductase Chain: I: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 67 d1gaqb_ not modelled 11.9 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 68 c1t3qD_ not modelled 11.8 25 PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 69 c1vlbA_ not modelled 11.7 56 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a 70 c3c6fD_ not modelled 11.7 26 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yetf protein; PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis 71 d1fxia_ not modelled 11.6 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 72 d1vlba1 not modelled 11.6 25 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 73 d2vana1 not modelled 11.5 24 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 74 d1awda_ not modelled 11.4 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 75 c2ldfA_ not modelled 11.4 60 PDB header:toxin Chain: A: PDB Molecule:sarafotoxin-m; PDBTitle: solution structure of the long sarafotoxin srtx-m 76 d1a70a_ not modelled 11.2 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 77 c1dgjA_ not modelled 11.1 44 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774 78 d1ep3b2 not modelled 10.7 30 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Dihydroorotate dehydrogenase B, PyrK subunit 79 c3hrdH_ not modelled 10.4 25 PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 80 c1n60D_ not modelled 10.1 29 PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form 81 d2g7ga1 not modelled 10.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 82 c2l02B_ not modelled 10.0 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 83 d1jroa2 not modelled 9.7 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 84 d1iuea_ not modelled 9.5 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 85 d1ffva2 not modelled 9.1 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 86 c2ds8A_ not modelled 9.1 25 PDB header:metal binding protein, protein binding Chain: A: PDB Molecule:atp-dependent clp protease atp-binding subunit PDBTitle: structure of the zbd-xb complex 87 d1czpa_ not modelled 8.8 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 88 d2bs2b2 not modelled 8.7 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 89 d1aipc1 not modelled 8.4 14 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 90 d1n62a2 not modelled 8.4 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 91 d1offa_ not modelled 8.3 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 92 d1frda_ not modelled 8.2 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 93 c2piaA_ not modelled 8.2 33 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 94 d1vlba2 not modelled 8.0 44 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 95 d1iloa_ not modelled 7.8 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 96 d1lvaa4 not modelled 7.8 4 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 97 d2fmpa2 not modelled 7.5 24 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 98 d1t3qa2 not modelled 7.5 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 99 d1efub3 not modelled 7.5 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0