Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	K	V	L	V	L	K	S	S	I	L	A	G	Y	S	Q	S	N	Q	L	S	D	Y	F	V	E	Q	W	R	E	K	H	S	A	D	E	I	T	V	R	D	L	A	A	N	P	I	P	V	L	D	G	E	L	V	G	A	L	R
Secondary structure
SS confidence
Disorder		?	?	?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	S	D	A	P	L	T	P	R	Q	Q	E	A	L	A	L	S	D	E	L	I	A	E	L	K	A	H	D	V	I	V	I	A	A	P	M	Y	N	F	N	I	S	T	Q	L	K	N	Y	F	D	L	V	A	R	A	G	V	T	F	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	T	E	N	G	P	E	G	L	V	T	G	K	K	A	I	V	I	T	S	R	G	G	I	H	K	D	G	P	T	D	L	V	T	P	Y	L	S	T	F	L	G	F	I	G	I	T	D	V	K	F	V	F	A	E	G	I	A	Y	G
Secondary structure
SS confidence
Disorder																										?			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Sequence		P	E	M	A	A	K	A	Q	S	D	A	K	A	A	I	D	S	I	V	S	A
Secondary structure
SS confidence
Disorder																					?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1t5b chain A Region: 1 - 201 Aligned: 199 Modelled: 198 Confidence: 100.0% Identity: 86% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 2z98 chain A domain 1 Region: 2 - 201 Aligned: 194 Modelled: 200 Confidence: 100.0% Identity: 100% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 3p0r chain A Region: 1 - 200 Aligned: 200 Modelled: 199 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne Phyre2 PDB 2v9c chain A Region: 2 - 201 Aligned: 194 Modelled: 200 Confidence: 100.0% Identity: 35% PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. Phyre2 PDB 2hpv chain A Region: 2 - 200 Aligned: 197 Modelled: 199 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis Phyre2 PDB 1qrd chain A Region: 1 - 200 Aligned: 197 Modelled: 200 Confidence: 100.0% Identity: 19% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 2qwx chain A domain 1 Region: 2 - 201 Aligned: 197 Modelled: 200 Confidence: 100.0% Identity: 18% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 1dxq chain A Region: 2 - 200 Aligned: 196 Modelled: 199 Confidence: 100.0% Identity: 18% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 1d4a chain A Region: 1 - 201 Aligned: 198 Modelled: 201 Confidence: 100.0% Identity: 17% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 3lcm chain B Region: 1 - 198 Aligned: 185 Modelled: 197 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 Phyre2 PDB 3rpe chain A Region: 1 - 201 Aligned: 170 Modelled: 173 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. Phyre2 PDB 1sqs chain A Region: 2 - 198 Aligned: 176 Modelled: 197 Confidence: 100.0% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Hypothetical protein SP1951 Phyre2 PDB 3f2v chain A Region: 2 - 198 Aligned: 165 Modelled: 174 Confidence: 100.0% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. Phyre2 PDB 1t0i chain A Region: 3 - 201 Aligned: 175 Modelled: 185 Confidence: 100.0% Identity: 22% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: NADPH-dependent FMN reductase Phyre2 PDB 2amj chain D Region: 1 - 198 Aligned: 161 Modelled: 170 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: D: PDB Molecule:modulator of drug activity b; PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7 Phyre2 PDB 3k1y chain E Region: 1 - 200 Aligned: 169 Modelled: 172 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d Phyre2 PDB 3ha2 chain B Region: 2 - 198 Aligned: 158 Modelled: 157 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a Phyre2 PDB 1rtt chain A Region: 1 - 201 Aligned: 168 Modelled: 185 Confidence: 100.0% Identity: 21% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: NADPH-dependent FMN reductase Phyre2 PDB 3fvw chain A Region: 2 - 201 Aligned: 170 Modelled: 184 Confidence: 100.0% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. Phyre2 PDB 1nni chain 1 Region: 2 - 200 Aligned: 161 Modelled: 169 Confidence: 100.0% Identity: 19% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: NADPH-dependent FMN reductase Phyre2 1 d1t5ba_ 2 d2z98a1 3 c3p0rA_ 4 c2v9cA_ 5 c2hpvA_ 6 d1qrda_ 7 d2qwxa1 8 d1dxqa_ 9 d1d4aa_ 10 c3lcmB_ 11 c3rpeA_ 12 d1sqsa_ 13 c3f2vA_ 14 d1t0ia_ 15 c2amjD_ 16 c3k1yE_ 17 c3ha2B_ 18 d1rtta_ 19 c3fvwA_ 20 d1nni1_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1t5ba_ 100.0 86 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 2 d2z98a1 100.0 100 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 3 c3p0rA_ 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 4 c2v9cA_ 100.0 35 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. 5 c2hpvA_ 100.0 34 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis 6 d1qrda_ 100.0 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 7 d2qwxa1 100.0 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 8 d1dxqa_ 100.0 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 9 d1d4aa_ 100.0 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 10 c3lcmB_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 11 c3rpeA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 12 d1sqsa_ 100.0 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 13 c3f2vA_ 100.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. 14 d1t0ia_ 100.0 22 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 15 c2amjD_ 100.0 17 PDB header:oxidoreductase Chain: D: PDB Molecule:modulator of drug activity b; PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7 16 c3k1yE_ 100.0 19 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 17 c3ha2B_ 100.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a 18 d1rtta_ 100.0 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 19 c3fvwA_ 100.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. 20 d1nni1_ 100.0 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 21 c2q62A_ not modelled 100.0 15 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 22 d1rlia_ not modelled 100.0 24 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 23 c2vzhA_ not modelled 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-dependent fmn reductase; PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex 24 c3eywA_ not modelled 100.0 19 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 25 d1ydga_ not modelled 100.0 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 26 c2fzvC_ not modelled 100.0 16 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 27 d2fzva1 not modelled 100.0 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 28 c3b6iB_ not modelled 99.9 22 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 29 c2zkiH_ not modelled 99.9 18 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 30 d2a5la1 not modelled 99.9 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 31 d1e5da1 not modelled 99.8 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 32 c3d7nA_ not modelled 99.8 19 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 33 d1ycga1 not modelled 99.8 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 34 d1vmea1 not modelled 99.8 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 35 c2ohiB_ not modelled 99.8 16 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 36 c1ychD_ not modelled 99.8 13 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 37 d2arka1 not modelled 99.8 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 38 c2q9uB_ not modelled 99.7 18 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 39 c1e5dA_ not modelled 99.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 40 c1vmeB_ not modelled 99.6 18 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 41 c3klbA_ not modelled 99.6 13 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 42 c3fniA_ not modelled 99.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 43 c3hlyA_ not modelled 99.5 17 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 44 c3edoA_ not modelled 99.5 13 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 45 d2fz5a1 not modelled 99.4 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 46 c3f6sI_ not modelled 99.2 18 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 47 d5nula_ not modelled 99.2 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 48 c2wc1A_ not modelled 99.1 17 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 49 d1oboa_ not modelled 99.1 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 50 d1czna_ not modelled 99.1 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 51 d1ag9a_ not modelled 98.9 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 52 c2hnbA_ not modelled 98.9 12 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 53 d1f4pa_ not modelled 98.8 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 54 d1ykga1 not modelled 98.7 8 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 55 d1bvyf_ not modelled 98.7 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 56 c1bvyF_ not modelled 98.7 16 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 57 d1b1ca_ not modelled 98.7 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 58 d1yoba1 not modelled 98.6 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 59 d1tlla2 not modelled 98.6 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 60 d2fcra_ not modelled 98.6 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 61 c3hr4C_ not modelled 98.6 9 PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex 62 d1ja1a2 not modelled 98.5 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 63 d1fuea_ not modelled 98.5 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 64 c1tllA_ not modelled 97.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. 65 c2bpoA_ not modelled 96.8 12 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 66 c1j9zB_ not modelled 96.7 13 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 67 c2x2oA_ not modelled 93.7 16 PDB header:flavoprotein Chain: A: PDB Molecule:nrdi protein; PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state 68 c2kyrA_ not modelled 93.6 21 PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 69 d1rlja_ not modelled 92.0 7 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavoprotein NrdI 70 d1uqra_ not modelled 91.1 21 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 71 d1iowa1 not modelled 89.8 19 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 72 c2eggA_ not modelled 89.3 17 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from2 geobacillus kaustophilus 73 c2dlnA_ not modelled 89.2 19 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 74 c3u80A_ not modelled 88.5 23 PDB header:unknown function Chain: A: PDB Molecule:3-dehydroquinate dehydratase, type ii; PDBTitle: 1.60 angstrom resolution crystal structure of a 3-dehydroquinate2 dehydratase-like protein from bifidobacterium longum 75 d2r4qa1 not modelled 88.2 29 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 76 d1n1ea2 not modelled 87.4 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 77 c3dhnA_ not modelled 87.2 15 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 78 d1n57a_ not modelled 84.6 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 79 c1m67A_ not modelled 83.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of leishmania mexicana gpdh complexed with inhibitor2 2-bromo-6-hydroxy-purine 80 c2r60A_ not modelled 82.2 11 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 81 c3kipU_ not modelled 81.2 22 PDB header:lyase Chain: U: PDB Molecule:3-dehydroquinase, type ii; PDBTitle: crystal structure of type-ii 3-dehydroquinase from c. albicans 82 d2r48a1 not modelled 77.1 25 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 83 c3k96B_ not modelled 76.9 19 PDB header:oxidoreductase Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+]; PDBTitle: 2.1 angstrom resolution crystal structure of glycerol-3-phosphate2 dehydrogenase (gpsa) from coxiella burnetii 84 c3n39D_ not modelled 76.2 14 PDB header:oxidoreductase Chain: D: PDB Molecule:protein nrdi; PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi 85 c2dzdB_ not modelled 75.0 11 PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of the biotin carboxylase domain of2 pyruvate carboxylase 86 c3l4eA_ not modelled 74.6 14 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 87 d1txga2 not modelled 74.5 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 88 c3c1oA_ not modelled 73.9 11 PDB header:oxidoreductase Chain: A: PDB Molecule:eugenol synthase; PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages 89 d2dlda2 not modelled 73.7 33 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 90 c2pv7B_ not modelled 73.2 27 PDB header:isomerase, oxidoreductase Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm) PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution 91 c3s40C_ not modelled 72.9 19 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne 92 d1e5qa1 not modelled 72.5 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 93 d1hdoa_ not modelled 72.4 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 94 d1f0ya2 not modelled 71.6 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 95 d1y81a1 not modelled 70.3 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 96 c3dttA_ not modelled 70.3 15 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp oxidoreductase; PDBTitle: crystal structure of a putative f420 dependent nadp-reductase2 (arth_0613) from arthrobacter sp. fb24 at 1.70 a resolution 97 c3etjB_ not modelled 69.1 27 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi 98 d2hmva1 not modelled 67.0 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain 99 c3tfoD_ not modelled 66.2 13 PDB header:oxidoreductase Chain: D: PDB Molecule:putative 3-oxoacyl-(acyl-carrier-protein) reductase; PDBTitle: crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein)2 reductase from sinorhizobium meliloti 100 c2nm0B_ not modelled 66.1 13 PDB header:oxidoreductase Chain: B: PDB Molecule:probable 3-oxacyl-(acyl-carrier-protein) reductase; PDBTitle: crystal structure of sco1815: a beta-ketoacyl-acyl carrier protein2 reductase from streptomyces coelicolor a3(2) 101 c1tvmA_ not modelled 65.1 19 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 102 d1vjta1 not modelled 62.0 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 103 c3l6dB_ not modelled 61.3 16 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440 104 c2i80B_ not modelled 59.8 5 PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies 105 c3ghyA_ not modelled 59.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:ketopantoate reductase protein; PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2 106 c3qvjB_ not modelled 59.2 15 PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae 107 c3ia7A_ not modelled 58.1 17 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 108 d2hy5b1 not modelled 57.9 12 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 109 c3re1B_ not modelled 56.1 22 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthetase; PDBTitle: crystal structure of uroporphyrinogen iii synthase from pseudomonas2 syringae pv. tomato dc3000 110 c2ehdB_ not modelled 55.9 4 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase, short-chain dehydrogenase/reductase family; PDBTitle: crystal structure analysis of oxidoreductase 111 c1jr2A_ not modelled 55.2 6 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase 112 d1jr2a_ not modelled 55.2 6 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 113 d2pgda2 not modelled 54.4 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 114 c2y0dB_ not modelled 54.0 14 PDB header:oxidoreductase Chain: B: PDB Molecule:udp-glucose dehydrogenase; PDBTitle: bcec mutation y10k 115 d1bg6a2 not modelled 53.4 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 116 d1w0da_ not modelled 52.9 26 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 117 c3kklA_ not modelled 52.8 13 PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae 118 d1u9ca_ not modelled 52.7 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 119 c3i47A_ not modelled 52.2 16 PDB header:lyase Chain: A: PDB Molecule:enoyl coa hydratase/isomerase (crotonase); PDBTitle: crystal structure of putative enoyl coa hydratase/isomerase2 (crotonase) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 120 c2o3jC_ not modelled 52.1 8 PDB header:oxidoreductase Chain: C: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: structure of caenorhabditis elegans udp-glucose dehydrogenase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0