Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	R	I	L	S	V	L	L	E	N	E	S	G	A	L	S	R	V	I	G	L	F	S	Q	R	G	Y	N	I	E	S	L	T	V	A	P	T	D	D	P	T	L	S	R	M	T	I	Q	T	V	G	D	E	K	V	L	E	Q	I
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	K	Q	L	H	K	L	V	D	V	L	R	V	S	E	L	G	Q	G	A	H	V	E	R	E	I	M	L	V	K	I	Q	A	S	G	Y	G	R	D	E	V	K	R	N	T	E	I	F	R	G	Q	I	I	D	V	T	P	S	L	Y
Secondary structure
SS confidence
Disorder																																					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Sequence		T	V	Q	L	A	G	T	S	G	K	L	D	A	F	L	A	S	I	R	D	V	A	K	I	V	E	V	A	R	S	G	V	V	G	L	S	R	G	D	K	I	M	R
Secondary structure
SS confidence
Disorder																															?	?	?				?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pc6 chain C Region: 2 - 163 Aligned: 161 Modelled: 162 Confidence: 100.0% Identity: 57% PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea Phyre2 PDB 2f1f chain A Region: 2 - 163 Aligned: 162 Modelled: 162 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli Phyre2 PDB 2fgc chain A Region: 1 - 159 Aligned: 157 Modelled: 158 Confidence: 100.0% Identity: 38% PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima Phyre2 PDB 2f1f chain A domain 2 Region: 78 - 163 Aligned: 86 Modelled: 86 Confidence: 100.0% Identity: 100% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2fgc chain A domain 2 Region: 1 - 77 Aligned: 77 Modelled: 77 Confidence: 100.0% Identity: 44% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2pc6 chain A domain 1 Region: 79 - 163 Aligned: 84 Modelled: 85 Confidence: 100.0% Identity: 52% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2pc6 chain A domain 2 Region: 1 - 77 Aligned: 77 Modelled: 76 Confidence: 100.0% Identity: 62% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2f1f chain A domain 1 Region: 2 - 77 Aligned: 76 Modelled: 76 Confidence: 100.0% Identity: 100% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2fgc chain A domain 1 Region: 78 - 159 Aligned: 80 Modelled: 82 Confidence: 100.0% Identity: 33% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2f06 chain A domain 2 Region: 1 - 63 Aligned: 61 Modelled: 63 Confidence: 99.5% Identity: 25% Fold: Ferredoxin-like Superfamily: ACT-like Family: BT0572-like Phyre2 PDB 1sc6 chain A domain 3 Region: 2 - 76 Aligned: 73 Modelled: 75 Confidence: 99.3% Identity: 23% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 1ygy chain A domain 3 Region: 3 - 77 Aligned: 73 Modelled: 75 Confidence: 99.2% Identity: 16% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 3ibw chain A Region: 4 - 78 Aligned: 74 Modelled: 75 Confidence: 98.8% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a Phyre2 PDB 2f06 chain B Region: 1 - 112 Aligned: 96 Modelled: 102 Confidence: 98.3% Identity: 22% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron Phyre2 PDB 1ygy chain A Region: 3 - 77 Aligned: 73 Modelled: 73 Confidence: 97.9% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis Phyre2 PDB 2nyi chain B Region: 3 - 142 Aligned: 138 Modelled: 140 Confidence: 97.7% Identity: 12% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria Phyre2 PDB 1u8s chain A domain 1 Region: 1 - 67 Aligned: 65 Modelled: 65 Confidence: 97.4% Identity: 18% Fold: Ferredoxin-like Superfamily: ACT-like Family: Glycine cleavage system transcriptional repressor Phyre2 PDB 1u8s chain A domain 2 Region: 4 - 74 Aligned: 70 Modelled: 71 Confidence: 97.4% Identity: 17% Fold: Ferredoxin-like Superfamily: ACT-like Family: Glycine cleavage system transcriptional repressor Phyre2 PDB 1zpv chain A domain 1 Region: 2 - 67 Aligned: 65 Modelled: 66 Confidence: 97.4% Identity: 15% Fold: Ferredoxin-like Superfamily: ACT-like Family: SP0238-like Phyre2 PDB 1y7p chain B Region: 1 - 83 Aligned: 81 Modelled: 83 Confidence: 97.3% Identity: 19% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein af1403; PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator Phyre2 1 c2pc6C_ 2 c2f1fA_ 3 c2fgcA_ 4 d2f1fa2 5 d2fgca2 6 d2pc6a1 7 d2pc6a2 8 d2f1fa1 9 d2fgca1 10 d2f06a2 11 d1sc6a3 12 d1ygya3 13 c3ibwA_ 14 c2f06B_ 15 c1ygyA_ 16 c2nyiB_ 17 d1u8sa1 18 d1u8sa2 19 d1zpva1 20 c1y7pB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2pc6C_ 100.0 57 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 2 c2f1fA_ 100.0 100 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli 3 c2fgcA_ 100.0 38 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima 4 d2f1fa2 100.0 100 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 5 d2fgca2 100.0 44 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 6 d2pc6a1 100.0 52 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 7 d2pc6a2 100.0 62 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 8 d2f1fa1 100.0 100 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 9 d2fgca1 100.0 33 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 10 d2f06a2 99.5 25 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 11 d1sc6a3 99.3 23 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 12 d1ygya3 99.2 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 13 c3ibwA_ 98.8 20 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 14 c2f06B_ 98.3 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 15 c1ygyA_ 97.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 16 c2nyiB_ 97.7 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria 17 d1u8sa1 97.4 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 18 d1u8sa2 97.4 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 19 d1zpva1 97.4 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:SP0238-like 20 c1y7pB_ 97.3 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein af1403; PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator 21 c3n0vD_ not modelled 97.2 7 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 22 d2qmwa2 not modelled 97.2 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 23 c1ybaC_ not modelled 97.1 23 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: the active form of phosphoglycerate dehydrogenase 24 c3mwbA_ not modelled 97.1 24 PDB header:lyase Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a 25 c2qmxB_ not modelled 97.0 18 PDB header:ligase Chain: B: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of l-phe inhibited prephenate dehydratase from2 chlorobium tepidum tls 26 c3nrbD_ not modelled 97.0 12 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 27 c1u8sB_ not modelled 97.0 11 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 28 c3luyA_ not modelled 96.9 14 PDB header:isomerase Chain: A: PDB Molecule:probable chorismate mutase; PDBTitle: putative chorismate mutase from bifidobacterium adolescentis 29 c3mtjA_ not modelled 96.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a 30 c3k5pA_ not modelled 96.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis 31 c3obiC_ not modelled 96.7 20 PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution 32 c2qmwA_ not modelled 96.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of the prephenate dehydratase (pdt) from2 staphylococcus aureus subsp. aureus mu50 33 c3o1lB_ not modelled 96.6 10 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 34 c3louB_ not modelled 96.6 16 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 35 d1phza1 not modelled 96.5 24 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 36 d2f06a1 not modelled 96.2 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 37 c2dtjA_ not modelled 95.8 13 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: crystal structure of regulatory subunit of aspartate kinase2 from corynebacterium glutamicum 38 c2re1A_ not modelled 95.2 8 PDB header:transferase Chain: A: PDB Molecule:aspartokinase, alpha and beta subunits; PDBTitle: crystal structure of aspartokinase alpha and beta subunits 39 d2hmfa3 not modelled 94.2 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 40 c2zhoB_ not modelled 93.7 15 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of the regulatory subunit of aspartate2 kinase from thermus thermophilus (ligand free form) 41 d2nzca1 not modelled 93.5 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:TM1266-like 42 d2cdqa2 not modelled 92.8 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 43 c3mahA_ not modelled 92.4 15 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83. 44 d2hmfa2 not modelled 91.6 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 45 c3l76B_ not modelled 90.6 11 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 46 c1tdjA_ not modelled 88.3 13 PDB header:allostery Chain: A: PDB Molecule:biosynthetic threonine deaminase; PDBTitle: threonine deaminase (biosynthetic) from e. coli 47 c2rjzA_ not modelled 88.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa 48 d2j0wa2 not modelled 87.4 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 49 d2cdqa3 not modelled 85.5 20 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 50 c3ab4K_ not modelled 84.9 15 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 51 c2phmA_ not modelled 84.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (phenylalanine-4-hydroxylase); PDBTitle: structure of phenylalanine hydroxylase dephosphorylated 52 c3c1nA_ not modelled 81.2 14 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 53 c2zw2B_ not modelled 77.0 11 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein sts178; PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs) 54 c3mgjA_ not modelled 76.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1480; PDBTitle: crystal structure of the saccharop_dh_n domain of mj14802 protein from methanococcus jannaschii. northeast structural3 genomics consortium target mjr83a. 55 d3dhxa1 not modelled 72.7 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 56 d2qswa1 not modelled 69.8 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 57 c2cdqB_ not modelled 69.7 15 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 58 d1gtda_ not modelled 68.7 20 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 59 c2dgbA_ not modelled 66.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein purs; PDBTitle: structure of thermus thermophilus purs in the p21 form 60 c3p96A_ not modelled 66.1 13 PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase serb; PDBTitle: crystal structure of phosphoserine phosphatase serb from mycobacterium2 avium, native form 61 c2gv1A_ not modelled 65.2 12 PDB header:hydrolase Chain: A: PDB Molecule:probable acylphosphatase; PDBTitle: nmr solution structure of the acylphosphatase from2 eschaerichia coli 62 d2j0wa3 not modelled 64.6 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 63 d1apsa_ not modelled 62.9 16 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 64 d1urra_ not modelled 54.4 13 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 65 c2j0wA_ not modelled 52.2 17 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 66 d1w2ia_ not modelled 51.3 13 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 67 d1tdja2 not modelled 50.4 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:Allosteric threonine deaminase C-terminal domain 68 d1vq3a_ not modelled 48.8 11 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 69 c1rwuA_ not modelled 45.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli 70 d1rwua_ not modelled 45.8 15 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:YbeD-like 71 d2acya_ not modelled 42.3 14 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 72 d1o51a_ not modelled 40.1 14 Fold:Ferredoxin-like Superfamily:GlnB-like Family:DUF190/COG1993 73 c2dclB_ not modelled 36.7 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical upf0166 protein ph1503; PDBTitle: structure of ph1503 protein from pyrococcus horikoshii ot3 74 d2qrra1 not modelled 36.0 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 75 c3crnA_ not modelled 34.3 17 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like; PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 76 d1t4aa_ not modelled 30.5 13 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 77 c1jqsC_ not modelled 29.8 16 PDB header:ribosome Chain: C: PDB Molecule:elongation factor g; PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog 78 c3br8A_ not modelled 28.4 14 PDB header:hydrolase Chain: A: PDB Molecule:probable acylphosphatase; PDBTitle: crystal structure of acylphosphatase from bacillus subtilis 79 c2jrlA_ not modelled 28.3 23 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer 80 d1n0ua5 not modelled 28.0 21 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 81 d1ln4a_ not modelled 27.5 14 Fold:IF3-like Superfamily:YhbY-like Family:YhbY-like 82 d1ulra_ not modelled 27.1 16 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 83 c3i42A_ not modelled 26.8 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 84 c3cg4A_ not modelled 26.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 85 c3eodA_ not modelled 24.5 23 PDB header:signaling protein Chain: A: PDB Molecule:protein hnr; PDBTitle: crystal structure of n-terminal domain of e. coli rssb 86 d1xjca_ not modelled 24.4 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 87 d1jo0a_ not modelled 23.6 11 Fold:IF3-like Superfamily:YhbY-like Family:YhbY-like 88 c2dnrA_ not modelled 23.2 15 PDB header:rna binding protein Chain: A: PDB Molecule:synaptojanin-1; PDBTitle: solution structure of rna binding domain in synaptojanin 1 89 c2cveA_ not modelled 22.9 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1053; PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8 90 d1zj8a1 not modelled 22.6 22 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 91 c2bjeA_ not modelled 22.5 21 PDB header:hydrolase Chain: A: PDB Molecule:acylphosphatase; PDBTitle: acylphosphatase from sulfolobus solfataricus. monclinic p212 space group 92 d1qkka_ not modelled 22.5 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 93 c3cfyA_ not modelled 20.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 94 c2yx5A_ not modelled 20.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0062 protein mj1593; PDBTitle: crystal structure of methanocaldococcus jannaschii purs, one of the2 subunits of formylglycinamide ribonucleotide amidotransferase in the3 purine biosynthetic pathway 95 d2a9pa1 not modelled 19.6 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 96 d1ixra2 not modelled 19.4 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA helicase RuvA subunit, N-terminal domain 97 d1dcfa_ not modelled 19.3 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:Receiver domain of the ethylene receptor 98 d1rq8a_ not modelled 19.3 23 Fold:IF3-like Superfamily:YhbY-like Family:YhbY-like 99 c2jsxA_ not modelled 18.7 15 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0