Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	K	L	M	F	A	S	D	I	H	G	S	L	P	A	T	E	R	V	L	E	L	F	A	Q	S	G	A	Q	W	L	V	I	L	G	D	V	L	N	H	G	P	R	N	A	L	P	E	G	Y	A	P	A	K	V	A	E	R	L
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	E	V	A	H	K	V	I	A	V	R	G	N	C	D	S	E	V	D	Q	M	L	L	H	F	P	I	T	A	P	W	Q	Q	V	L	L	E	K	Q	R	L	F	L	T	H	G	H	L	F	G	P	E	N	L	P	A	L	N	Q	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	V	L	V	Y	G	H	T	H	L	P	V	A	E	Q	R	G	E	I	F	H	F	N	P	G	S	V	S	I	P	K	G	G	N	P	A	S	Y	G	M	L	D	N	D	V	L	S	V	I	A	L	N	D	Q	S	I	I	A	Q	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.
Sequence		A	I	N	P
Secondary structure
SS confidence
Disorder			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1su1 chain A Region: 1 - 184 Aligned: 184 Modelled: 184 Confidence: 100.0% Identity: 99% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yfce; PDBTitle: structural and biochemical characterization of yfce, a2 phosphoesterase from e. coli Phyre2 PDB 1su1 chain A Region: 1 - 184 Aligned: 184 Modelled: 184 Confidence: 100.0% Identity: 99% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: YfcE-like Phyre2 PDB 1s3l chain A Region: 2 - 172 Aligned: 157 Modelled: 158 Confidence: 100.0% Identity: 27% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: YfcE-like Phyre2 PDB 1s3m chain A Region: 2 - 172 Aligned: 157 Modelled: 158 Confidence: 100.0% Identity: 27% PDB header:phosphodiesterase Chain: A: PDB Molecule:hypothetical protein mj0936; PDBTitle: structural and functional characterization of a novel2 archaeal phosphodiesterase Phyre2 PDB 2a22 chain A domain 1 Region: 3 - 181 Aligned: 166 Modelled: 166 Confidence: 100.0% Identity: 22% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: YfcE-like Phyre2 PDB 3ck2 chain A domain 1 Region: 2 - 176 Aligned: 149 Modelled: 158 Confidence: 100.0% Identity: 26% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: YfcE-like Phyre2 PDB 1z2w chain A domain 1 Region: 2 - 181 Aligned: 159 Modelled: 167 Confidence: 100.0% Identity: 25% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: YfcE-like Phyre2 PDB 2kkn chain A Region: 1 - 171 Aligned: 147 Modelled: 158 Confidence: 100.0% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of themotoga maritima protein tm1076:2 northeast structural genomics consortium target vt57 Phyre2 PDB 3rqz chain C Region: 2 - 168 Aligned: 152 Modelled: 166 Confidence: 100.0% Identity: 31% PDB header:hydrolase Chain: C: PDB Molecule:metallophosphoesterase; PDBTitle: crystal structure of metallophosphoesterase from sphaerobacter2 thermophilus Phyre2 PDB 3qfn chain A Region: 1 - 176 Aligned: 168 Modelled: 176 Confidence: 100.0% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate Phyre2 PDB 1nnw chain A Region: 3 - 172 Aligned: 162 Modelled: 170 Confidence: 100.0% Identity: 23% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Phosphoesterase-related Phyre2 PDB 1uf3 chain A Region: 3 - 174 Aligned: 160 Modelled: 172 Confidence: 99.9% Identity: 23% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: TT1561-like Phyre2 PDB 2yvt chain A domain 1 Region: 3 - 172 Aligned: 163 Modelled: 170 Confidence: 99.9% Identity: 20% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: TT1561-like Phyre2 PDB 3av0 chain A Region: 2 - 165 Aligned: 163 Modelled: 164 Confidence: 99.9% Identity: 17% PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s Phyre2 PDB 1g5b chain A Region: 3 - 163 Aligned: 147 Modelled: 161 Confidence: 99.9% Identity: 16% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 3auz chain A Region: 2 - 165 Aligned: 163 Modelled: 164 Confidence: 99.9% Identity: 20% PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11 with manganese Phyre2 PDB 1ii7 chain A Region: 2 - 178 Aligned: 176 Modelled: 177 Confidence: 99.9% Identity: 20% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: DNA double-strand break repair nuclease Phyre2 PDB 2q8u chain A Region: 2 - 165 Aligned: 162 Modelled: 164 Confidence: 99.8% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:exonuclease, putative; PDBTitle: crystal structure of mre11 from thermotoga maritima msb8 (tm1635) at2 2.20 a resolution Phyre2 PDB 3ib7 chain A Region: 3 - 181 Aligned: 177 Modelled: 179 Confidence: 99.8% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:icc protein; PDBTitle: crystal structure of full length rv0805 Phyre2 PDB 1xm7 chain A Region: 2 - 146 Aligned: 136 Modelled: 144 Confidence: 99.8% Identity: 21% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Hypothetical protein aq 1666 Phyre2 1 c1su1A_ 2 d1su1a_ 3 d1s3la_ 4 c1s3mA_ 5 d2a22a1 6 d3ck2a1 7 d1z2wa1 8 c2kknA_ 9 c3rqzC_ 10 c3qfnA_ 11 d1nnwa_ 12 d1uf3a_ 13 d2yvta1 14 c3av0A_ 15 d1g5ba_ 16 c3auzA_ 17 d1ii7a_ 18 c2q8uA_ 19 c3ib7A_ 20 d1xm7a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1su1A_ 100.0 99 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yfce; PDBTitle: structural and biochemical characterization of yfce, a2 phosphoesterase from e. coli 2 d1su1a_ 100.0 99 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 3 d1s3la_ 100.0 27 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 4 c1s3mA_ 100.0 27 PDB header:phosphodiesterase Chain: A: PDB Molecule:hypothetical protein mj0936; PDBTitle: structural and functional characterization of a novel2 archaeal phosphodiesterase 5 d2a22a1 100.0 22 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 6 d3ck2a1 100.0 26 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 7 d1z2wa1 100.0 25 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 8 c2kknA_ 100.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of themotoga maritima protein tm1076:2 northeast structural genomics consortium target vt57 9 c3rqzC_ 100.0 31 PDB header:hydrolase Chain: C: PDB Molecule:metallophosphoesterase; PDBTitle: crystal structure of metallophosphoesterase from sphaerobacter2 thermophilus 10 c3qfnA_ 100.0 27 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate 11 d1nnwa_ 100.0 23 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Phosphoesterase-related 12 d1uf3a_ 99.9 23 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 13 d2yvta1 99.9 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 14 c3av0A_ 99.9 17 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s 15 d1g5ba_ 99.9 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 16 c3auzA_ 99.9 20 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11 with manganese 17 d1ii7a_ 99.9 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DNA double-strand break repair nuclease 18 c2q8uA_ 99.8 21 PDB header:hydrolase Chain: A: PDB Molecule:exonuclease, putative; PDBTitle: crystal structure of mre11 from thermotoga maritima msb8 (tm1635) at2 2.20 a resolution 19 c3ib7A_ 99.8 16 PDB header:hydrolase Chain: A: PDB Molecule:icc protein; PDBTitle: crystal structure of full length rv0805 20 d1xm7a_ 99.8 21 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Hypothetical protein aq 1666 21 d3d03a1 not modelled 99.8 22 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:GpdQ-like 22 c3qg5D_ not modelled 99.8 21 PDB header:hydrolase Chain: D: PDB Molecule:mre11; PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair 23 c3t1iC_ not modelled 99.8 23 PDB header:hydrolase Chain: C: PDB Molecule:double-strand break repair protein mre11a; PDBTitle: crystal structure of human mre11: understanding tumorigenic mutations 24 c2qjcA_ not modelled 99.7 21 PDB header:hydrolase Chain: A: PDB Molecule:diadenosine tetraphosphatase, putative; PDBTitle: crystal structure of a putative diadenosine tetraphosphatase 25 c3rl4A_ not modelled 99.7 23 PDB header:hydrolase Chain: A: PDB Molecule:metallophosphoesterase mpped2; PDBTitle: rat metallophosphodiesterase mpped2 g252h mutant 26 d2hy1a1 not modelled 99.7 17 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:GpdQ-like 27 c2hy1A_ not modelled 99.7 17 PDB header:hydrolase Chain: A: PDB Molecule:rv0805; PDBTitle: crystal structure of rv0805 28 c2dfjA_ not modelled 99.7 21 PDB header:hydrolase Chain: A: PDB Molecule:diadenosinetetraphosphatase; PDBTitle: crystal structure of the diadenosine tetraphosphate2 hydrolase from shigella flexneri 2a 29 c2zbmA_ not modelled 99.7 21 PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine-phosphatase; PDBTitle: crystal structure of i115m mutant cold-active protein2 tyrosine phosphatase 30 d2nxfa1 not modelled 99.6 21 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:ADPRibase-Mn-like 31 c2xmoB_ not modelled 99.6 25 PDB header:hydrolase Chain: B: PDB Molecule:lmo2642 protein; PDBTitle: the crystal structure of lmo2642 32 d3c5wc1 not modelled 99.5 23 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 33 d1qhwa_ not modelled 99.5 17 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Purple acid phosphatase-like 34 c1qhwA_ not modelled 99.5 17 PDB header:hydrolase Chain: A: PDB Molecule:protein (purple acid phosphatase); PDBTitle: purple acid phosphatase from rat bone 35 d1utea_ not modelled 99.5 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Purple acid phosphatase-like 36 d1jk7a_ not modelled 99.4 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 37 c2jogA_ not modelled 99.4 18 PDB header:hydrolase Chain: A: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: structure of the calcineurin-nfat complex 38 d1auia_ not modelled 99.4 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 39 c1auiA_ not modelled 99.4 20 PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine phosphatase 2b; PDBTitle: human calcineurin heterodimer 40 d1s95a_ not modelled 99.4 23 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 41 c2p6bC_ not modelled 99.3 20 PDB header:hydrolase/hydrolase regulator Chain: C: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: crystal structure of human calcineurin in complex with2 pvivit peptide 42 c1wao4_ not modelled 99.3 23 PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure 43 d2p6ba1 not modelled 99.3 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 44 d1xzwa2 not modelled 99.3 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Purple acid phosphatase-like 45 d1s70a_ not modelled 99.3 21 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 46 c1oidA_ not modelled 99.3 19 PDB header:hydrolase Chain: A: PDB Molecule:protein usha; PDBTitle: 5'-nucleotidase (e. coli) with an engineered disulfide2 bridge (s228c, p513c) 47 c3qfkA_ not modelled 99.3 22 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: 2.05 angstrom crystal structure of putative 5'-nucleotidase from2 staphylococcus aureus in complex with alpha-ketoglutarate 48 d2z1aa2 not modelled 99.3 22 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 49 c2z1aA_ not modelled 99.2 23 PDB header:hydrolase Chain: A: PDB Molecule:5'-nucleotidase; PDBTitle: crystal structure of 5'-nucleotidase precursor from thermus2 thermophilus hb8 50 d1usha2 not modelled 99.2 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 51 c3icfB_ not modelled 99.2 18 PDB header:hydrolase Chain: B: PDB Molecule:serine/threonine-protein phosphatase t; PDBTitle: structure of protein serine/threonine phosphatase from saccharomyces2 cerevisiae with similarity to human phosphatase pp5 52 d2qfra2 not modelled 99.1 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Purple acid phosphatase-like 53 c2wdfA_ not modelled 99.1 26 PDB header:hydrolase Chain: A: PDB Molecule:sulfur oxidation protein soxb; PDBTitle: termus thermophilus sulfate thiohydrolase soxb 54 c3ivdA_ not modelled 99.1 16 PDB header:hydrolase Chain: A: PDB Molecule:nucleotidase; PDBTitle: putative 5'-nucleotidase (c4898) from escherichia coli in2 complex with uridine 55 c3zu0A_ not modelled 99.0 17 PDB header:hydrolase Chain: A: PDB Molecule:nad nucleotidase; PDBTitle: structure of haemophilus influenzae nad nucleotidase (nadn) 56 c3e0jG_ not modelled 98.9 14 PDB header:transferase Chain: G: PDB Molecule:dna polymerase subunit delta-2; PDBTitle: x-ray structure of the complex of regulatory subunits of2 human dna polymerase delta 57 d2z06a1 not modelled 98.8 18 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TTHA0625-like 58 c3floG_ not modelled 98.8 14 PDB header:transferase Chain: G: PDB Molecule:dna polymerase alpha subunit b; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit 59 d1t71a_ not modelled 98.7 21 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DR1281-like 60 d1t70a_ not modelled 98.7 19 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DR1281-like 61 d3c9fa2 not modelled 98.6 15 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 62 c1kbpB_ not modelled 98.6 18 PDB header:hydrolase (phosphoric monoester) Chain: B: PDB Molecule:purple acid phosphatase; PDBTitle: kidney bean purple acid phosphatase 63 c3jyfB_ not modelled 98.6 20 PDB header:hydrolase Chain: B: PDB Molecule:2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- PDBTitle: the crystal structure of a 2,3-cyclic nucleotide 2-2 phosphodiesterase/3-nucleotidase bifunctional periplasmic precursor3 protein from klebsiella pneumoniae subsp. pneumoniae mgh 78578 64 c3gveB_ not modelled 98.6 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yfkn protein; PDBTitle: crystal structure of calcineurin-like phosphoesterase yfkn from2 bacillus subtilis 65 c1xzwB_ not modelled 98.6 20 PDB header:hydrolase Chain: B: PDB Molecule:purple acid phosphatase; PDBTitle: sweet potato purple acid phosphatase/phosphate complex 66 c3c9fB_ not modelled 98.2 16 PDB header:hydrolase Chain: B: PDB Molecule:5'-nucleotidase; PDBTitle: crystal structure of 5'-nucleotidase from candida albicans sc5314 67 d2nv0a1 not modelled 86.8 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 68 d1o98a1 not modelled 86.6 18 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 69 c2issF_ not modelled 81.4 13 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 70 c3dnfB_ not modelled 77.3 20 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 71 d1gg4a1 not modelled 71.6 12 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 72 c1o98A_ not modelled 68.7 18 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate 73 c3dlaD_ not modelled 60.9 12 PDB header:ligase Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don 74 c1gshA_ not modelled 60.2 21 PDB header:glutathione biosynthesis ligase Chain: A: PDB Molecule:glutathione biosynthetic ligase; PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5 75 c3igzB_ not modelled 59.1 15 PDB header:isomerase Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase; PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration 76 d1wzca1 not modelled 52.3 17 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 77 c3g13B_ not modelled 51.9 9 PDB header:recombination Chain: B: PDB Molecule:putative conjugative transposon recombinase; PDBTitle: crystal structure of putative conjugative transposon recombinase from2 clostridium difficile 78 c1b74A_ not modelled 49.4 18 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus 79 d1gsoa2 not modelled 46.6 22 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 80 d1j31a_ not modelled 40.0 15 Fold:Carbon-nitrogen hydrolase Superfamily:Carbon-nitrogen hydrolase Family:Carbamilase 81 c3n05B_ not modelled 37.9 30 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: crystal structure of nh3-dependent nad+ synthetase from streptomyces2 avermitilis 82 d1rlma_ not modelled 37.5 21 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 83 c3dqqB_ not modelled 36.0 33 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative trna synthase; PDBTitle: the crystal structure of the putative trna synthase from salmonella2 typhimurium lt2 84 c3hkxA_ not modelled 34.8 24 PDB header:hydrolase Chain: A: PDB Molecule:amidase; PDBTitle: crystal structure analysis of an amidase from nesterenkonia sp. 85 c3dzcA_ not modelled 34.1 9 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 86 d1rdua_ not modelled 33.7 22 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:MTH1175-like 87 c2eklA_ not modelled 32.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: structure of st1218 protein from sulfolobus tokodaii 88 c3g23A_ not modelled 32.2 10 PDB header:hydrolase Chain: A: PDB Molecule:ld-carboxypeptidase a; PDBTitle: crystal structure of a ld-carboxypeptidase a (saro_1426) from2 novosphingobium aromaticivorans dsm at 1.89 a resolution 89 c2ywjA_ not modelled 32.0 17 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii 90 c3mpoD_ not modelled 31.9 29 PDB header:hydrolase Chain: D: PDB Molecule:predicted hydrolase of the had superfamily; PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis 91 d1b74a1 not modelled 29.3 22 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 92 d2a9va1 not modelled 29.1 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 93 c3c3wB_ not modelled 28.7 17 PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr 94 d1gsaa1 not modelled 28.6 21 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Prokaryotic glutathione synthetase, N-terminal domain 95 c2jfzB_ not modelled 28.4 15 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor 96 d1nn4a_ not modelled 28.3 19 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 97 c3ke8A_ not modelled 28.2 22 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate PDBTitle: crystal structure of isph:hmbpp-complex 98 c3dojA_ not modelled 27.9 38 PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase-like protein; PDBTitle: structure of glyoxylate reductase 1 from arabidopsis2 (atglyr1) 99 d2z15a1 not modelled 27.6 19 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 100 d2blna2 not modelled 27.1 17 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 101 c3ilvA_ not modelled 26.8 13 PDB header:ligase Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii 102 d1qdlb_ not modelled 26.1 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 103 c3t8yA_ not modelled 24.8 13 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb 104 c2e11B_ not modelled 24.6 16 PDB header:hydrolase Chain: B: PDB Molecule:hydrolase; PDBTitle: the crystal structure of xc1258 from xanthomonas campestris: a cn-2 hydrolase superfamily protein with an arsenic adduct in the active3 site 105 c3l7nA_ not modelled 24.5 19 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c 106 c1gsoA_ not modelled 23.6 9 PDB header:ligase Chain: A: PDB Molecule:protein (glycinamide ribonucleotide synthetase); PDBTitle: glycinamide ribonucleotide synthetase (gar-syn) from e.2 coli. 107 c2p6pB_ not modelled 23.2 14 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 108 d1o1ya_ not modelled 21.6 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0