Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	N	F	D	L	S	P	L	Y	R	S	A	I	G	F	D	R	L	F	N	H	L	E	N	N	Q	S	Q	S	N	G	G	Y	P	P	Y	N	V	E	L	V	D	E	N	H	Y	R	I	A	I	A	V	A	G	F	A	E	S	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?												?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	E	I	T	A	Q	D	N	L	L	V	V	K	G	A	H	A	D	E	Q	K	E	R	T	Y	L	Y	Q	G	I	A	E	R	N	F	E	R	K	F	Q	L	A	E	N	I	H	V	R	G	A	N	L	V	N	G	L	L	Y	I	D
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?	?																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Sequence		L	E	R	V	I	P	E	A	K	K	P	R	R	I	E	I	N
Secondary structure
SS confidence
Disorder				?	?		?	?	?	?	?	?	?		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1gme chain A Region: 1 - 137 Aligned: 136 Modelled: 137 Confidence: 99.9% Identity: 19% Fold: HSP20-like chaperones Superfamily: HSP20-like chaperones Family: HSP20 Phyre2 PDB 1gme chain B Region: 35 - 137 Aligned: 102 Modelled: 103 Confidence: 99.9% Identity: 22% Fold: HSP20-like chaperones Superfamily: HSP20-like chaperones Family: HSP20 Phyre2 PDB 1shs chain A Region: 30 - 136 Aligned: 104 Modelled: 107 Confidence: 99.9% Identity: 19% Fold: HSP20-like chaperones Superfamily: HSP20-like chaperones Family: HSP20 Phyre2 PDB 1shs chain D Region: 30 - 136 Aligned: 104 Modelled: 107 Confidence: 99.9% Identity: 19% PDB header:heat shock protein Chain: D: PDB Molecule:small heat shock protein; PDBTitle: small heat shock protein from methanococcus jannaschii Phyre2 PDB 3gla chain A Region: 31 - 124 Aligned: 93 Modelled: 94 Confidence: 99.8% Identity: 18% PDB header:chaperone Chain: A: PDB Molecule:low molecular weight heat shock protein; PDBTitle: crystal structure of the hspa from xanthomonas axonopodis Phyre2 PDB 3l1e chain A Region: 35 - 137 Aligned: 98 Modelled: 103 Confidence: 99.8% Identity: 20% PDB header:chaperone Chain: A: PDB Molecule:alpha-crystallin a chain; PDBTitle: bovine alphaa crystallin zinc bound Phyre2 PDB 2bol chain A Region: 4 - 132 Aligned: 123 Modelled: 129 Confidence: 99.8% Identity: 20% PDB header:heat shock protein Chain: A: PDB Molecule:small heat shock protein; PDBTitle: crystal structure and assembly of tsp36, a metazoan small2 heat shock protein Phyre2 PDB 2wj5 chain A Region: 40 - 131 Aligned: 87 Modelled: 92 Confidence: 99.8% Identity: 21% PDB header:chaperone Chain: A: PDB Molecule:heat shock protein beta-6; PDBTitle: rat alpha crystallin domain Phyre2 PDB 3aab chain A Region: 34 - 135 Aligned: 98 Modelled: 102 Confidence: 99.7% Identity: 16% PDB header:chaperone Chain: A: PDB Molecule:putative uncharacterized protein st1653; PDBTitle: small heat shock protein hsp14.0 with the mutations of i120f and i122f2 in the form i crystal Phyre2 PDB 2h50 chain A domain 1 Region: 35 - 123 Aligned: 88 Modelled: 89 Confidence: 99.7% Identity: 18% Fold: HSP20-like chaperones Superfamily: HSP20-like chaperones Family: HSP20 Phyre2 PDB 2klr chain A Region: 41 - 124 Aligned: 79 Modelled: 84 Confidence: 99.7% Identity: 22% PDB header:chaperone Chain: A: PDB Molecule:alpha-crystallin b chain; PDBTitle: solid-state nmr structure of the alpha-crystallin domain in alphab-2 crystallin oligomers Phyre2 PDB 3q9q chain B Region: 46 - 123 Aligned: 67 Modelled: 78 Confidence: 99.6% Identity: 27% PDB header:chaperone Chain: B: PDB Molecule:heat shock protein beta-1; PDBTitle: hspb1 fragment second crystal form Phyre2 PDB 2wj7 chain D Region: 49 - 120 Aligned: 67 Modelled: 72 Confidence: 99.5% Identity: 24% PDB header:chaperone Chain: D: PDB Molecule:alpha-crystallin b chain; PDBTitle: human alphab crystallin Phyre2 PDB 3igf chain B Region: 40 - 120 Aligned: 63 Modelled: 63 Confidence: 97.9% Identity: 21% PDB header:atp binding protein Chain: B: PDB Molecule:all4481 protein; PDBTitle: crystal structure of the all4481 protein from nostoc sp. pcc 7120,2 northeast structural genomics consortium target nsr300 Phyre2 PDB 1rl1 chain A Region: 40 - 128 Aligned: 78 Modelled: 89 Confidence: 97.7% Identity: 8% Fold: HSP20-like chaperones Superfamily: HSP20-like chaperones Family: GS domain Phyre2 PDB 2jki chain S Region: 38 - 128 Aligned: 80 Modelled: 91 Confidence: 97.6% Identity: 10% PDB header:chaperone Chain: S: PDB Molecule:sgt1-like protein; PDBTitle: complex of hsp90 n-terminal and sgt1 cs domain Phyre2 PDB 3eud chain E Region: 36 - 128 Aligned: 75 Modelled: 75 Confidence: 96.5% Identity: 16% PDB header:nuclear protein Chain: E: PDB Molecule:protein shq1; PDBTitle: structure of the cs domain of the essential h/aca rnp2 assembly protein shq1p Phyre2 PDB 1wfi chain A Region: 31 - 128 Aligned: 84 Modelled: 84 Confidence: 96.3% Identity: 13% Fold: HSP20-like chaperones Superfamily: HSP20-like chaperones Family: Nuclear movement domain Phyre2 PDB 1ejf chain A Region: 35 - 128 Aligned: 82 Modelled: 94 Confidence: 96.2% Identity: 7% Fold: HSP20-like chaperones Superfamily: HSP20-like chaperones Family: Co-chaperone p23-like Phyre2 PDB 1x5m chain A Region: 23 - 127 Aligned: 95 Modelled: 105 Confidence: 96.0% Identity: 4% PDB header:apoptosis, signaling protein Chain: A: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of the core domain of calcyclin binding2 protein; siah-interacting protein (sip) Phyre2 1 d1gmea_ 2 d1gmeb_ 3 d1shsa_ 4 c1shsD_ 5 c3glaA_ 6 c3l1eA_ 7 c2bolA_ 8 c2wj5A_ 9 c3aabA_ 10 d2h50a1 11 c2klrA_ 12 c3q9qB_ 13 c2wj7D_ 14 c3igfB_ 15 d1rl1a_ 16 c2jkiS_ 17 c3eudE_ 18 d1wfia_ 19 d1ejfa_ 20 c1x5mA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1gmea_ 99.9 19 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20 2 d1gmeb_ 99.9 22 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20 3 d1shsa_ 99.9 19 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20 4 c1shsD_ 99.9 19 PDB header:heat shock protein Chain: D: PDB Molecule:small heat shock protein; PDBTitle: small heat shock protein from methanococcus jannaschii 5 c3glaA_ 99.8 18 PDB header:chaperone Chain: A: PDB Molecule:low molecular weight heat shock protein; PDBTitle: crystal structure of the hspa from xanthomonas axonopodis 6 c3l1eA_ 99.8 20 PDB header:chaperone Chain: A: PDB Molecule:alpha-crystallin a chain; PDBTitle: bovine alphaa crystallin zinc bound 7 c2bolA_ 99.8 20 PDB header:heat shock protein Chain: A: PDB Molecule:small heat shock protein; PDBTitle: crystal structure and assembly of tsp36, a metazoan small2 heat shock protein 8 c2wj5A_ 99.8 21 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein beta-6; PDBTitle: rat alpha crystallin domain 9 c3aabA_ 99.7 16 PDB header:chaperone Chain: A: PDB Molecule:putative uncharacterized protein st1653; PDBTitle: small heat shock protein hsp14.0 with the mutations of i120f and i122f2 in the form i crystal 10 d2h50a1 99.7 18 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20 11 c2klrA_ 99.7 22 PDB header:chaperone Chain: A: PDB Molecule:alpha-crystallin b chain; PDBTitle: solid-state nmr structure of the alpha-crystallin domain in alphab-2 crystallin oligomers 12 c3q9qB_ 99.6 27 PDB header:chaperone Chain: B: PDB Molecule:heat shock protein beta-1; PDBTitle: hspb1 fragment second crystal form 13 c2wj7D_ 99.5 24 PDB header:chaperone Chain: D: PDB Molecule:alpha-crystallin b chain; PDBTitle: human alphab crystallin 14 c3igfB_ 97.9 21 PDB header:atp binding protein Chain: B: PDB Molecule:all4481 protein; PDBTitle: crystal structure of the all4481 protein from nostoc sp. pcc 7120,2 northeast structural genomics consortium target nsr300 15 d1rl1a_ 97.7 8 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:GS domain 16 c2jkiS_ 97.6 10 PDB header:chaperone Chain: S: PDB Molecule:sgt1-like protein; PDBTitle: complex of hsp90 n-terminal and sgt1 cs domain 17 c3eudE_ 96.5 16 PDB header:nuclear protein Chain: E: PDB Molecule:protein shq1; PDBTitle: structure of the cs domain of the essential h/aca rnp2 assembly protein shq1p 18 d1wfia_ 96.3 13 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:Nuclear movement domain 19 d1ejfa_ 96.2 7 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:Co-chaperone p23-like 20 c1x5mA_ 96.0 4 PDB header:apoptosis, signaling protein Chain: A: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of the core domain of calcyclin binding2 protein; siah-interacting protein (sip) 21 d1wh0a_ not modelled 95.6 7 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:GS domain 22 c2o30A_ not modelled 95.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nuclear movement protein; PDBTitle: nuclear movement protein from e. cuniculi gb-m1 23 c2k8qA_ not modelled 95.1 16 PDB header:structural protein Chain: A: PDB Molecule:protein shq1; PDBTitle: nmr structure of shq1p n-terminal domain 24 d1wgva_ not modelled 94.0 14 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:Nuclear movement domain 25 d1xo9a_ not modelled 93.8 9 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:Co-chaperone p23-like 26 c2rh0B_ not modelled 92.0 13 PDB header:nuclear protein Chain: B: PDB Molecule:nudc domain-containing protein 2; PDBTitle: crystal structure of nudc domain-containing protein 22 (13542905) from mus musculus at 1.95 a resolution 27 c2cg9Y_ not modelled 84.6 16 PDB header:chaperone Chain: Y: PDB Molecule:co-chaperone protein sba1; PDBTitle: crystal structure of an hsp90-sba1 closed chaperone complex 28 d2c7fa1 not modelled 43.2 19 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 29 d2cqla1 not modelled 33.6 24 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 30 d2ga5a1 not modelled 33.0 13 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 31 c2lezA_ not modelled 31.6 16 PDB header:signaling protein Chain: A: PDB Molecule:secreted effector protein pipb2; PDBTitle: solution nmr structure of n-terminal domain of salmonella effector2 protein pipb2. northeast structural genomics consortium (nesg) target3 stt318a 32 d2fqla1 not modelled 31.2 13 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 33 d1ekga_ not modelled 28.0 20 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 34 c2wvsD_ not modelled 23.1 5 PDB header:hydrolase Chain: D: PDB Molecule:alpha-l-fucosidase; PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant 35 d1ew4a_ not modelled 23.1 27 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 36 d1rl6a1 not modelled 22.3 19 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 37 d1h8la1 not modelled 21.7 8 Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain 38 d1vqoe1 not modelled 19.3 12 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 39 c2xxsA_ not modelled 18.8 24 PDB header:protein binding Chain: A: PDB Molecule:protein mxig; PDBTitle: solution structure of the n-terminal domain of the shigella2 type iii secretion protein mxig 40 d2j01h1 not modelled 16.9 18 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 41 d1sm3h2 not modelled 16.5 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 42 d2fath2 not modelled 15.2 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 43 d1c12b2 not modelled 14.9 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 44 d1mexh2 not modelled 13.8 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 45 c487dJ_ not modelled 12.2 19 PDB header:ribosome Chain: J: PDB Molecule:protein (50s l6 ribosomal protein); PDBTitle: seven ribosomal proteins fitted to a cryo-electron2 microscopic map of the large 50s subunit at 7.5 angstroms3 resolution 46 d1teth2 not modelled 12.2 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 47 d1osph2 not modelled 11.7 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 48 d1hxmb2 not modelled 11.5 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 49 c2gjhA_ not modelled 11.2 16 PDB header:de novo protein Chain: A: PDB Molecule:designed protein; PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7) 50 c3muwU_ not modelled 10.1 10 PDB header:virus Chain: U: PDB Molecule:structural polyprotein; PDBTitle: pseudo-atomic structure of the e2-e1 protein shell in sindbis virus 51 d1pz5b2 not modelled 10.1 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 52 d1fe8h2 not modelled 10.0 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 53 d2pcpb2 not modelled 10.0 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 54 d1uwya1 not modelled 9.8 17 Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain 55 d1clzh2 not modelled 9.7 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 56 d1mjuh2 not modelled 9.5 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 57 d1a5fh2 not modelled 9.3 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 58 d1q72h2 not modelled 9.3 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 59 d1qw9a1 not modelled 9.3 15 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 60 d1zs8a1 not modelled 9.3 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 61 d1q0yh2 not modelled 9.0 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 62 d1q0xh2 not modelled 9.0 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 63 d1kcvh2 not modelled 8.9 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 64 d2g60h1 not modelled 8.9 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 65 c4a1eE_ not modelled 7.9 35 PDB header:ribosome Chain: E: PDB Molecule:60s ribosomal protein l9; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 66 c2xfbI_ not modelled 7.9 15 PDB header:virus Chain: I: PDB Molecule:e2 envelope glycoprotein; PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map 67 c3n43B_ not modelled 7.8 15 PDB header:viral protein Chain: B: PDB Molecule:e2 envelope glycoprotein; PDBTitle: crystal structures of the mature envelope glycoprotein complex2 (trypsin cleavage) of chikungunya virus. 68 c2hguH_ not modelled 7.8 14 PDB header:ribosome Chain: H: PDB Molecule:50s ribosomal protein l6; PDBTitle: 70s t.th. ribosome functional complex with mrna and e- and p-site2 trnas at 4.5a. this entry 2hgu contains 50s ribosomal subunit. the3 30s ribosomal subunit can be found in pdb entry 2hgr. 69 c2zkre_ not modelled 7.7 29 PDB header:ribosomal protein/rna Chain: E: PDB Molecule:rna expansion segment es7 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 70 d2jelh2 not modelled 7.7 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 71 c2nsmA_ not modelled 7.7 11 PDB header:hydrolase Chain: A: PDB Molecule:carboxypeptidase n catalytic chain; PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain 72 d2nwta1 not modelled 7.6 27 Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:AF2212-like 73 c3iz5F_ not modelled 7.3 12 PDB header:ribosome Chain: F: PDB Molecule:60s ribosomal protein l9 (l6p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 74 d1ji1a2 not modelled 7.1 14 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 75 c3n40P_ not modelled 7.1 15 PDB header:viral protein Chain: P: PDB Molecule:p62 envelope glycoprotein; PDBTitle: crystal structure of the immature envelope glycoprotein complex of2 chikungunya virus. 76 d1u8ib2 not modelled 7.0 5 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 77 d1eapb2 not modelled 6.9 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 78 d3c2ah2 not modelled 6.7 4 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 79 d1r3ha1 not modelled 6.6 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 80 d1nldh2 not modelled 6.6 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 81 c3j0cH_ not modelled 6.5 10 PDB header:virus Chain: H: PDB Molecule:e2 envelope glycoprotein; PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map 82 d1lk3h2 not modelled 6.5 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 83 d1pg7x2 not modelled 6.4 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 84 d1s21a_ not modelled 6.3 29 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:AvrPphF ORF2, a type III effector 85 c1s21A_ not modelled 6.3 29 PDB header:chaperone Chain: A: PDB Molecule:orf2; PDBTitle: crystal structure of avrpphf orf2, a type iii effector from2 p. syringae 86 d1bfob2 not modelled 6.3 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 87 d1je6a1 not modelled 6.1 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 88 c3ccmE_ not modelled 6.0 12 PDB header:ribosome Chain: E: PDB Molecule:50s ribosomal protein l6p; PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation g2611u 89 d1a6tb2 not modelled 6.0 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 90 c2e0gA_ not modelled 6.0 22 PDB header:replication Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: dnaa n-terminal domain 91 c2x89G_ not modelled 5.7 12 PDB header:immune system Chain: G: PDB Molecule:beta-2-microglobulin; PDBTitle: structure of the beta2_microglobulin involved in2 amyloidogenesis 92 c1h8lA_ not modelled 5.6 11 PDB header:carboxypeptidase Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882; PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa 93 d1t66d2 not modelled 5.5 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 94 d1kfah2 not modelled 5.5 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 95 c3bboI_ not modelled 5.4 35 PDB header:ribosome Chain: I: PDB Molecule:ribosomal protein l6; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 96 d1h0db2 not modelled 5.4 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 97 d1nvpc_ not modelled 5.2 18 Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain 98 c1nvpC_ not modelled 5.2 18 PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia beta chain; PDBTitle: human tfiia/tbp/dna complex 99 d1a3rh2 not modelled 5.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0