Phyre 2 Results for P0C054

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0C054
Date | Thu Jan 5 11:29:40 GMT 2012
Unique Job ID | 07cd28a6c6f537ec

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1gmea_
Top template information
Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20
Confidence and coverage
Confidence: | 99.9% | Coverage: | 99%
136 residues ( 99% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | R | N | F | D | L | S | P | L | Y | R | S | A | I | G | F | D | R | L | F | N | H | L | E | N | N | Q | S | Q | S | N | G | G | Y | P | P | Y | N | V | E | L | V | D | E | N | H | Y | R | I | A | I | A | V | A | G | F | A | E | S | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | L | E | I | T | A | Q | D | N | L | L | V | V | K | G | A | H | A | D | E | Q | K | E | R | T | Y | L | Y | Q | G | I | A | E | R | N | F | E | R | K | F | Q | L | A | E | N | I | H | V | R | G | A | N | L | V | N | G | L | L | Y | I | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | .
Sequence |  | L | E | R | V | I | P | E | A | K | K | P | R | R | I | E | I | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  | ? | ? |  | ? | ? | ? | ? | ? | ? | ? |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1gmea_ |

### PDB 1gme chain A

Region: 1 - 137
Aligned: 136
Modelled: 137
Confidence: 99.9%
Identity: 19%
Fold: HSP20-like chaperones
Superfamily: HSP20-like chaperones
Family: HSP20

Phyre2
2 |
| d1gmeb_ |

### PDB 1gme chain B

Region: 35 - 137
Aligned: 102
Modelled: 103
Confidence: 99.9%
Identity: 22%
Fold: HSP20-like chaperones
Superfamily: HSP20-like chaperones
Family: HSP20

Phyre2
3 |
| d1shsa_ |

### PDB 1shs chain A

Region: 30 - 136
Aligned: 104
Modelled: 107
Confidence: 99.9%
Identity: 19%
Fold: HSP20-like chaperones
Superfamily: HSP20-like chaperones
Family: HSP20

Phyre2
4 |
| c1shsD_ |

### PDB 1shs chain D

Region: 30 - 136
Aligned: 104
Modelled: 107
Confidence: 99.9%
Identity: 19%
PDB header:heat shock protein
Chain: D: PDB Molecule:small heat shock protein;
PDBTitle: small heat shock protein from methanococcus jannaschii

Phyre2
5 |
| c3glaA_ |

### PDB 3gla chain A

Region: 31 - 124
Aligned: 93
Modelled: 94
Confidence: 99.8%
Identity: 18%
PDB header:chaperone
Chain: A: PDB Molecule:low molecular weight heat shock protein;
PDBTitle: crystal structure of the hspa from xanthomonas axonopodis

Phyre2
6 |
| c3l1eA_ |

### PDB 3l1e chain A

Region: 35 - 137
Aligned: 98
Modelled: 103
Confidence: 99.8%
Identity: 20%
PDB header:chaperone
Chain: A: PDB Molecule:alpha-crystallin a chain;
PDBTitle: bovine alphaa crystallin zinc bound

Phyre2
7 |
| c2bolA_ |

### PDB 2bol chain A

Region: 4 - 132
Aligned: 123
Modelled: 129
Confidence: 99.8%
Identity: 20%
PDB header:heat shock protein
Chain: A: PDB Molecule:small heat shock protein;
PDBTitle: crystal structure and assembly of tsp36, a metazoan small2 heat shock protein

Phyre2
8 |
| c2wj5A_ |

### PDB 2wj5 chain A

Region: 40 - 131
Aligned: 87
Modelled: 92
Confidence: 99.8%
Identity: 21%
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein beta-6;
PDBTitle: rat alpha crystallin domain

Phyre2
9 |
| c3aabA_ |

### PDB 3aab chain A

Region: 34 - 135
Aligned: 98
Modelled: 102
Confidence: 99.7%
Identity: 16%
PDB header:chaperone
Chain: A: PDB Molecule:putative uncharacterized protein st1653;
PDBTitle: small heat shock protein hsp14.0 with the mutations of i120f and i122f2 in the form i crystal

Phyre2
10 |
| d2h50a1 |

### PDB 2h50 chain A domain 1

Region: 35 - 123
Aligned: 88
Modelled: 89
Confidence: 99.7%
Identity: 18%
Fold: HSP20-like chaperones
Superfamily: HSP20-like chaperones
Family: HSP20

Phyre2
11 |
| c2klrA_ |

### PDB 2klr chain A

Region: 41 - 124
Aligned: 79
Modelled: 84
Confidence: 99.7%
Identity: 22%
PDB header:chaperone
Chain: A: PDB Molecule:alpha-crystallin b chain;
PDBTitle: solid-state nmr structure of the alpha-crystallin domain in alphab-2 crystallin oligomers

Phyre2
12 |
| c3q9qB_ |

### PDB 3q9q chain B

Region: 46 - 123
Aligned: 67
Modelled: 78
Confidence: 99.6%
Identity: 27%
PDB header:chaperone
Chain: B: PDB Molecule:heat shock protein beta-1;
PDBTitle: hspb1 fragment second crystal form

Phyre2
13 |
| c2wj7D_ |

### PDB 2wj7 chain D

Region: 49 - 120
Aligned: 67
Modelled: 72
Confidence: 99.5%
Identity: 24%
PDB header:chaperone
Chain: D: PDB Molecule:alpha-crystallin b chain;
PDBTitle: human alphab crystallin

Phyre2
14 |
| c3igfB_ |

### PDB 3igf chain B

Region: 40 - 120
Aligned: 63
Modelled: 63
Confidence: 97.9%
Identity: 21%
PDB header:atp binding protein
Chain: B: PDB Molecule:all4481 protein;
PDBTitle: crystal structure of the all4481 protein from nostoc sp. pcc 7120,2 northeast structural genomics consortium target nsr300

Phyre2
15 |
| d1rl1a_ |

### PDB 1rl1 chain A

Region: 40 - 128
Aligned: 78
Modelled: 89
Confidence: 97.7%
Identity: 8%
Fold: HSP20-like chaperones
Superfamily: HSP20-like chaperones
Family: GS domain

Phyre2
16 |
| c2jkiS_ |

### PDB 2jki chain S

Region: 38 - 128
Aligned: 80
Modelled: 91
Confidence: 97.6%
Identity: 10%
PDB header:chaperone
Chain: S: PDB Molecule:sgt1-like protein;
PDBTitle: complex of hsp90 n-terminal and sgt1 cs domain

Phyre2
17 |
| c3eudE_ |

### PDB 3eud chain E

Region: 36 - 128
Aligned: 75
Modelled: 75
Confidence: 96.5%
Identity: 16%
PDB header:nuclear protein
Chain: E: PDB Molecule:protein shq1;
PDBTitle: structure of the cs domain of the essential h/aca rnp2 assembly protein shq1p

Phyre2
18 |
| d1wfia_ |

### PDB 1wfi chain A

Region: 31 - 128
Aligned: 84
Modelled: 84
Confidence: 96.3%
Identity: 13%
Fold: HSP20-like chaperones
Superfamily: HSP20-like chaperones
Family: Nuclear movement domain

Phyre2
19 |
| d1ejfa_ |

### PDB 1ejf chain A

Region: 35 - 128
Aligned: 82
Modelled: 94
Confidence: 96.2%
Identity: 7%
Fold: HSP20-like chaperones
Superfamily: HSP20-like chaperones
Family: Co-chaperone p23-like

Phyre2
20 |
| c1x5mA_ |

### PDB 1x5m chain A

Region: 23 - 127
Aligned: 95
Modelled: 105
Confidence: 96.0%
Identity: 4%
PDB header:apoptosis, signaling protein
Chain: A: PDB Molecule:calcyclin-binding protein;
PDBTitle: solution structure of the core domain of calcyclin binding2 protein; siah-interacting protein (sip)

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1gmea_ |
|  | 99.9 | 19 | Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20
2 | d1gmeb_ |
|  | 99.9 | 22 | Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20
3 | d1shsa_ |
|  | 99.9 | 19 | Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20
4 | c1shsD_ |
|  | 99.9 | 19 | PDB header:heat shock protein Chain: D: PDB Molecule:small heat shock protein; PDBTitle: small heat shock protein from methanococcus jannaschii
5 | c3glaA_ |
|  | 99.8 | 18 | PDB header:chaperone Chain: A: PDB Molecule:low molecular weight heat shock protein; PDBTitle: crystal structure of the hspa from xanthomonas axonopodis
6 | c3l1eA_ |
|  | 99.8 | 20 | PDB header:chaperone Chain: A: PDB Molecule:alpha-crystallin a chain; PDBTitle: bovine alphaa crystallin zinc bound
7 | c2bolA_ |
|  | 99.8 | 20 | PDB header:heat shock protein Chain: A: PDB Molecule:small heat shock protein; PDBTitle: crystal structure and assembly of tsp36, a metazoan small2 heat shock protein
8 | c2wj5A_ |
|  | 99.8 | 21 | PDB header:chaperone Chain: A: PDB Molecule:heat shock protein beta-6; PDBTitle: rat alpha crystallin domain
9 | c3aabA_ |
|  | 99.7 | 16 | PDB header:chaperone Chain: A: PDB Molecule:putative uncharacterized protein st1653; PDBTitle: small heat shock protein hsp14.0 with the mutations of i120f and i122f2 in the form i crystal
10 | d2h50a1 |
|  | 99.7 | 18 | Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20
11 | c2klrA_ |
|  | 99.7 | 22 | PDB header:chaperone Chain: A: PDB Molecule:alpha-crystallin b chain; PDBTitle: solid-state nmr structure of the alpha-crystallin domain in alphab-2 crystallin oligomers
12 | c3q9qB_ |
|  | 99.6 | 27 | PDB header:chaperone Chain: B: PDB Molecule:heat shock protein beta-1; PDBTitle: hspb1 fragment second crystal form
13 | c2wj7D_ |
|  | 99.5 | 24 | PDB header:chaperone Chain: D: PDB Molecule:alpha-crystallin b chain; PDBTitle: human alphab crystallin
14 | c3igfB_ |
|  | 97.9 | 21 | PDB header:atp binding protein Chain: B: PDB Molecule:all4481 protein; PDBTitle: crystal structure of the all4481 protein from nostoc sp. pcc 7120,2 northeast structural genomics consortium target nsr300
15 | d1rl1a_ |
|  | 97.7 | 8 | Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:GS domain
16 | c2jkiS_ |
|  | 97.6 | 10 | PDB header:chaperone Chain: S: PDB Molecule:sgt1-like protein; PDBTitle: complex of hsp90 n-terminal and sgt1 cs domain
17 | c3eudE_ |
|  | 96.5 | 16 | PDB header:nuclear protein Chain: E: PDB Molecule:protein shq1; PDBTitle: structure of the cs domain of the essential h/aca rnp2 assembly protein shq1p
18 | d1wfia_ |
|  | 96.3 | 13 | Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:Nuclear movement domain
19 | d1ejfa_ |
|  | 96.2 | 7 | Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:Co-chaperone p23-like
20 | c1x5mA_ |
|  | 96.0 | 4 | PDB header:apoptosis, signaling protein Chain: A: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of the core domain of calcyclin binding2 protein; siah-interacting protein (sip)
21 | d1wh0a_ |
| not modelled | 95.6 | 7 | Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:GS domain
22 | c2o30A_ |
| not modelled | 95.1 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nuclear movement protein; PDBTitle: nuclear movement protein from e. cuniculi gb-m1
23 | c2k8qA_ |
| not modelled | 95.1 | 16 | PDB header:structural protein Chain: A: PDB Molecule:protein shq1; PDBTitle: nmr structure of shq1p n-terminal domain
24 | d1wgva_ |
| not modelled | 94.0 | 14 | Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:Nuclear movement domain
25 | d1xo9a_ |
| not modelled | 93.8 | 9 | Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:Co-chaperone p23-like
26 | c2rh0B_ |
| not modelled | 92.0 | 13 | PDB header:nuclear protein Chain: B: PDB Molecule:nudc domain-containing protein 2; PDBTitle: crystal structure of nudc domain-containing protein 22 (13542905) from mus musculus at 1.95 a resolution
27 | c2cg9Y_ |
| not modelled | 84.6 | 16 | PDB header:chaperone Chain: Y: PDB Molecule:co-chaperone protein sba1; PDBTitle: crystal structure of an hsp90-sba1 closed chaperone complex
28 | d2c7fa1 |
| not modelled | 43.2 | 19 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
29 | d2cqla1 |
| not modelled | 33.6 | 24 | Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6
30 | d2ga5a1 |
| not modelled | 33.0 | 13 | Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like
31 | c2lezA_ |
| not modelled | 31.6 | 16 | PDB header:signaling protein Chain: A: PDB Molecule:secreted effector protein pipb2; PDBTitle: solution nmr structure of n-terminal domain of salmonella effector2 protein pipb2. northeast structural genomics consortium (nesg) target3 stt318a
32 | d2fqla1 |
| not modelled | 31.2 | 13 | Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like
33 | d1ekga_ |
| not modelled | 28.0 | 20 | Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like
34 | c2wvsD_ |
| not modelled | 23.1 | 5 | PDB header:hydrolase Chain: D: PDB Molecule:alpha-l-fucosidase; PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant
35 | d1ew4a_ |
| not modelled | 23.1 | 27 | Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like
36 | d1rl6a1 |
| not modelled | 22.3 | 19 | Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6
37 | d1h8la1 |
| not modelled | 21.7 | 8 | Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain
38 | d1vqoe1 |
| not modelled | 19.3 | 12 | Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6
39 | c2xxsA_ |
| not modelled | 18.8 | 24 | PDB header:protein binding Chain: A: PDB Molecule:protein mxig; PDBTitle: solution structure of the n-terminal domain of the shigella2 type iii secretion protein mxig
40 | d2j01h1 |
| not modelled | 16.9 | 18 | Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6
41 | d1sm3h2 |
| not modelled | 16.5 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
42 | d2fath2 |
| not modelled | 15.2 | 8 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
43 | d1c12b2 |
| not modelled | 14.9 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
44 | d1mexh2 |
| not modelled | 13.8 | 11 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
45 | c487dJ_ |
| not modelled | 12.2 | 19 | PDB header:ribosome Chain: J: PDB Molecule:protein (50s l6 ribosomal protein); PDBTitle: seven ribosomal proteins fitted to a cryo-electron2 microscopic map of the large 50s subunit at 7.5 angstroms3 resolution
46 | d1teth2 |
| not modelled | 12.2 | 18 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
47 | d1osph2 |
| not modelled | 11.7 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
48 | d1hxmb2 |
| not modelled | 11.5 | 13 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
49 | c2gjhA_ |
| not modelled | 11.2 | 16 | PDB header:de novo protein Chain: A: PDB Molecule:designed protein; PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7)
50 | c3muwU_ |
| not modelled | 10.1 | 10 | PDB header:virus Chain: U: PDB Molecule:structural polyprotein; PDBTitle: pseudo-atomic structure of the e2-e1 protein shell in sindbis virus
51 | d1pz5b2 |
| not modelled | 10.1 | 7 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
52 | d1fe8h2 |
| not modelled | 10.0 | 13 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
53 | d2pcpb2 |
| not modelled | 10.0 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
54 | d1uwya1 |
| not modelled | 9.8 | 17 | Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain
55 | d1clzh2 |
| not modelled | 9.7 | 7 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
56 | d1mjuh2 |
| not modelled | 9.5 | 11 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
57 | d1a5fh2 |
| not modelled | 9.3 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
58 | d1q72h2 |
| not modelled | 9.3 | 11 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
59 | d1qw9a1 |
| not modelled | 9.3 | 15 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
60 | d1zs8a1 |
| not modelled | 9.3 | 12 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
61 | d1q0yh2 |
| not modelled | 9.0 | 7 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
62 | d1q0xh2 |
| not modelled | 9.0 | 7 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
63 | d1kcvh2 |
| not modelled | 8.9 | 7 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
64 | d2g60h1 |
| not modelled | 8.9 | 12 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
65 | c4a1eE_ |
| not modelled | 7.9 | 35 | PDB header:ribosome Chain: E: PDB Molecule:60s ribosomal protein l9; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
66 | c2xfbI_ |
| not modelled | 7.9 | 15 | PDB header:virus Chain: I: PDB Molecule:e2 envelope glycoprotein; PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map
67 | c3n43B_ |
| not modelled | 7.8 | 15 | PDB header:viral protein Chain: B: PDB Molecule:e2 envelope glycoprotein; PDBTitle: crystal structures of the mature envelope glycoprotein complex2 (trypsin cleavage) of chikungunya virus.
68 | c2hguH_ |
| not modelled | 7.8 | 14 | PDB header:ribosome Chain: H: PDB Molecule:50s ribosomal protein l6; PDBTitle: 70s t.th. ribosome functional complex with mrna and e- and p-site2 trnas at 4.5a. this entry 2hgu contains 50s ribosomal subunit. the3 30s ribosomal subunit can be found in pdb entry 2hgr.
69 | c2zkre_ |
| not modelled | 7.7 | 29 | PDB header:ribosomal protein/rna Chain: E: PDB Molecule:rna expansion segment es7 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
70 | d2jelh2 |
| not modelled | 7.7 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
71 | c2nsmA_ |
| not modelled | 7.7 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:carboxypeptidase n catalytic chain; PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
72 | d2nwta1 |
| not modelled | 7.6 | 27 | Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:AF2212-like
73 | c3iz5F_ |
| not modelled | 7.3 | 12 | PDB header:ribosome Chain: F: PDB Molecule:60s ribosomal protein l9 (l6p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
74 | d1ji1a2 |
| not modelled | 7.1 | 14 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
75 | c3n40P_ |
| not modelled | 7.1 | 15 | PDB header:viral protein Chain: P: PDB Molecule:p62 envelope glycoprotein; PDBTitle: crystal structure of the immature envelope glycoprotein complex of2 chikungunya virus.
76 | d1u8ib2 |
| not modelled | 7.0 | 5 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
77 | d1eapb2 |
| not modelled | 6.9 | 12 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
78 | d3c2ah2 |
| not modelled | 6.7 | 4 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
79 | d1r3ha1 |
| not modelled | 6.6 | 14 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
80 | d1nldh2 |
| not modelled | 6.6 | 12 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
81 | c3j0cH_ |
| not modelled | 6.5 | 10 | PDB header:virus Chain: H: PDB Molecule:e2 envelope glycoprotein; PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map
82 | d1lk3h2 |
| not modelled | 6.5 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
83 | d1pg7x2 |
| not modelled | 6.4 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
84 | d1s21a_ |
| not modelled | 6.3 | 29 | Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:AvrPphF ORF2, a type III effector
85 | c1s21A_ |
| not modelled | 6.3 | 29 | PDB header:chaperone Chain: A: PDB Molecule:orf2; PDBTitle: crystal structure of avrpphf orf2, a type iii effector from2 p. syringae
86 | d1bfob2 |
| not modelled | 6.3 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
87 | d1je6a1 |
| not modelled | 6.1 | 17 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
88 | c3ccmE_ |
| not modelled | 6.0 | 12 | PDB header:ribosome Chain: E: PDB Molecule:50s ribosomal protein l6p; PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation g2611u
89 | d1a6tb2 |
| not modelled | 6.0 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
90 | c2e0gA_ |
| not modelled | 6.0 | 22 | PDB header:replication Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: dnaa n-terminal domain
91 | c2x89G_ |
| not modelled | 5.7 | 12 | PDB header:immune system Chain: G: PDB Molecule:beta-2-microglobulin; PDBTitle: structure of the beta2_microglobulin involved in2 amyloidogenesis
92 | c1h8lA_ |
| not modelled | 5.6 | 11 | PDB header:carboxypeptidase Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882; PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
93 | d1t66d2 |
| not modelled | 5.5 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
94 | d1kfah2 |
| not modelled | 5.5 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
95 | c3bboI_ |
| not modelled | 5.4 | 35 | PDB header:ribosome Chain: I: PDB Molecule:ribosomal protein l6; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome
96 | d1h0db2 |
| not modelled | 5.4 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)
97 | d1nvpc_ |
| not modelled | 5.2 | 18 | Fold:Transcription factor IIA (TFIIA), beta-barrel domain Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain Family:Transcription factor IIA (TFIIA), beta-barrel domain
98 | c1nvpC_ |
| not modelled | 5.2 | 18 | PDB header:transcription/dna Chain: C: PDB Molecule:transcription initiation factor iia beta chain; PDBTitle: human tfiia/tbp/dna complex
99 | d1a3rh2 |
| not modelled | 5.1 | 13 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0