Email l.a.kelley@imperial.ac.uk Description P0C079 Date Thu Jan 5 11:29:49 GMT 2012 Unique Job ID 064dcf99beb1a18e

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2k29A_ 99.7 100 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 2 c2kc8B_ 94.4 100 PDB header:toxin/toxin repressor Chain: B: PDB Molecule:antitoxin relb; PDBTitle: structure of e. coli toxin rele (r81a/r83a) mutant in2 complex with antitoxin relbc (k47-l79) peptide 3 d2bj7a1 90.6 18 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 4 c1q5vB_ 87.0 26 PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr 5 c2bj3D_ 84.1 20 PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo 6 d1p94a_ 80.7 18 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 7 c2kebA_ 79.6 8 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 8 c2ca9B_ 77.4 17 PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation 9 d2hzaa1 75.6 24 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 10 d2hzab1 74.2 26 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 11 c2k5jB_ 58.9 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 12 d1sxjd1 50.7 20 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 13 d1mnta_ 42.0 16 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 14 d1y9ba1 39.5 15 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:VCA0319-like 15 d2hsga1 36.0 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 16 d1myla_ 35.9 19 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 17 c1u9pA_ 35.2 17 PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc 18 d1b28a_ 30.1 20 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 19 d1u5ta1 29.2 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 20 c1u5tA_ 28.0 10 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 21 c2kwpA_ not modelled 27.0 18 PDB header:transcription Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: solution structure of the aminoterminal domain of e. coli nusa 22 c3cuqA_ not modelled 26.7 21 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 23 c2zmeA_ not modelled 26.4 21 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 24 c1vbiA_ not modelled 26.3 20 PDB header:oxidoreductase Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8 25 c3ltiA_ not modelled 25.8 25 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains 26 d1mylb_ not modelled 24.5 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 27 c3cqrB_ not modelled 23.9 14 PDB header:oxidoreductase Chain: B: PDB Molecule:violaxanthin de-epoxidase, chloroplast; PDBTitle: crystal structure of the lipocalin domain of violaxanthin2 de-epoxidase (vde) at ph5 28 d2cpga_ not modelled 23.5 13 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 29 d1i4ua_ not modelled 23.3 19 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 30 d1qpza1 not modelled 22.8 21 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 31 d2bsqe1 not modelled 22.6 18 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Trafficking protein A-like 32 c2h1rA_ not modelled 22.5 19 PDB header:transferase Chain: A: PDB Molecule:dimethyladenosine transferase, putative; PDBTitle: crystal structure of a dimethyladenosine transferase from2 plasmodium falciparum 33 c3ebwA_ not modelled 22.3 24 PDB header:allergen Chain: A: PDB Molecule:per a 4 allergen; PDBTitle: crystal structure of major allergens, per a 4 from2 cockroaches 34 d2ff4a2 not modelled 20.4 26 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:BTAD-like 35 c3oopA_ not modelled 20.3 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2960 protein; PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262 36 d1efaa1 not modelled 20.3 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 37 c2jucA_ not modelled 20.2 9 PDB header:unknown function Chain: A: PDB Molecule:pre-mrna-splicing factor urn1; PDBTitle: urn1 ff domain yeast 38 d1cuka1 not modelled 20.1 31 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 39 d2bjca1 not modelled 19.1 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 40 d1uxca_ not modelled 18.1 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 41 c3nrwA_ not modelled 18.1 18 PDB header:recombination Chain: A: PDB Molecule:phage integrase/site-specific recombinase; PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a 42 d1lcda_ not modelled 17.1 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 43 d2vqca1 not modelled 16.8 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:F112-like 44 c2vqcA_ not modelled 16.8 11 PDB header:dna-binding protein Chain: A: PDB Molecule:hypothetical 13.2 kda protein; PDBTitle: structure of a dna binding winged-helix protein, f-112,2 from sulfolobus spindle-shaped virus 1. 45 d1sxjb1 not modelled 16.6 8 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 46 d1gkab_ not modelled 16.5 24 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 47 d1qwda_ not modelled 16.4 33 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 48 c2hzqA_ not modelled 16.1 10 PDB header:transport protein Chain: A: PDB Molecule:apolipoprotein d; PDBTitle: crystal structure of human apolipoprotein d (apod) in2 complex with progesterone 49 c3h87D_ not modelled 16.0 28 PDB header:toxin/antitoxin Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis 50 d1l6ja1 not modelled 16.0 27 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 51 c3ecoB_ not modelled 15.4 24 PDB header:transcription Chain: B: PDB Molecule:mepr; PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa 52 c2lcvA_ not modelled 14.2 19 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation 53 c2q37A_ not modelled 13.9 24 PDB header:plant protein, lyase Chain: A: PDB Molecule:ohcu decarboxylase; PDBTitle: crystal structure of ohcu decarboxylase in the presence of2 (s)-allantoin 54 d2q37a1 not modelled 13.9 24 Fold:UraD-like Superfamily:UraD-Like Family:UraD-like 55 c3by0B_ not modelled 13.6 19 PDB header:ligand binding protein Chain: B: PDB Molecule:neutrophil gelatinase-associated lipocalin; PDBTitle: crystal structure of siderocalin (ngal, lipocalin 2) w79a-r81a2 complexed with ferric enterobactin 56 c2l8nA_ not modelled 13.2 19 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional repressor cytr; PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna 57 c2k23A_ not modelled 12.8 29 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 2; PDBTitle: solution structure analysis of the rlcn2 58 c2xstA_ not modelled 12.6 5 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 15; PDBTitle: crystal structure of the human lipocalin 15 59 c2qwwB_ not modelled 12.5 10 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution 60 d1a0pa1 not modelled 12.3 14 Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain 61 d2d0ob1 not modelled 11.9 14 Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Dehydratase-reactivating factor beta subunit 62 c3l4rA_ not modelled 11.5 10 PDB header:allergen, lipid binding protein Chain: A: PDB Molecule:minor allergen can f 2; PDBTitle: crystal structure of the dog lipocalin allergen can f 2 and2 implications for cross-reactivity to the cat allergen fel d 4 63 d2pb9a1 not modelled 11.4 21 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:Phosphomethylpyrimidine kinase C-terminal domain-like 64 d1epba_ not modelled 11.3 10 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 65 c2l5pA_ not modelled 10.9 18 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 12; PDBTitle: solution nmr structure of protein lipocalin 12 from rat epididymis 66 d1jhfa1 not modelled 10.8 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 67 d1v92a_ not modelled 10.8 30 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 68 c1avoA_ not modelled 10.5 17 PDB header:proteasome activator Chain: A: PDB Molecule:11s regulator; PDBTitle: proteasome activator reg(alpha) 69 c2rdpA_ not modelled 10.5 24 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator marr; PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus 70 c2rn7A_ not modelled 10.4 23 PDB header:unknown function Chain: A: PDB Molecule:is629 orfa; PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125 71 d1gm6a_ not modelled 10.4 14 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 72 d2ieaa3 not modelled 10.3 15 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like 73 d1ew3a_ not modelled 9.9 19 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 74 c3jw4C_ not modelled 9.9 18 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator, marr/emrr family; PDBTitle: the structure of a putative marr family transcriptional regulator from2 clostridium acetobutylicum 75 d1mkma1 not modelled 9.8 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 76 d1iqpa1 not modelled 9.7 14 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 77 c3k0lA_ not modelled 9.7 16 PDB header:transcription regulator Chain: A: PDB Molecule:repressor protein; PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp 78 d1uxda_ not modelled 9.6 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 79 c2pexA_ not modelled 9.5 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator ohrr; PDBTitle: structure of reduced c22s ohrr from xanthamonas campestris 80 d1g7oa1 not modelled 9.4 9 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 81 d1bazb_ not modelled 9.2 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 82 c2jxnA_ not modelled 9.2 6 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein ymr074c; PDBTitle: solution structure of s. cerevisiae pdcd5-like protein ymr074cp 83 d1znda1 not modelled 9.2 19 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 84 d1x71a1 not modelled 9.1 19 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 85 d1iwga5 not modelled 8.9 17 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 86 c2g8yB_ not modelled 8.8 18 PDB header:oxidoreductase Chain: B: PDB Molecule:malate/l-lactate dehydrogenases; PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli. 87 d2o8ia1 not modelled 8.8 14 Fold:UraD-like Superfamily:UraD-Like Family:UraD-like 88 d2o70a1 not modelled 8.7 17 Fold:UraD-like Superfamily:UraD-Like Family:UraD-like 89 d2doda1 not modelled 8.7 18 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 90 d1uzca_ not modelled 8.3 18 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 91 d1xkia_ not modelled 8.1 16 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 92 d2jn6a1 not modelled 8.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Cgl2762-like 93 c2kobA_ not modelled 8.0 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of clolep_01837 (fragment 61-160)2 from clostridium leptum. northeast structural genomics3 consortium target qlr8a 94 d1avsa_ not modelled 7.9 14 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 95 d1baza_ not modelled 7.8 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 96 d1xl3c1 not modelled 7.7 6 Fold:Type III secretion system domain Superfamily:Type III secretion system domain Family:TyeA-like 97 c1bdhA_ not modelled 7.7 19 PDB header:transcription/dna Chain: A: PDB Molecule:protein (purine repressor); PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex 98 d1yupa1 not modelled 7.5 26 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 99 d2isya1 not modelled 7.5 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein