Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP32051
DateWed Jan 25 15:20:49 GMT 2012
Unique Job ID0527998f3d42f5f7

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1dcea2
Top template information
Fold:C2 domain-like
Superfamily:Rab geranylgeranyltransferase alpha-subunit, insert domain
Family:Rab geranylgeranyltransferase alpha-subunit, insert domain
Confidence and coverage
Confidence: 21.0% Coverage: 1%
7 residues ( 1% of your sequence) have been modelled with 21.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNRIYRVIWNCTLQVFQACSELTRRAGKTSTVNLRKSSGLTTKFSRLTLGVLLALSGSAS
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Disorder  ????








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   .........70.........80.........90.........100.........110.........120
Sequence  GASLEVDNDQITNIDTDVAYDAYLVGWYGTGVLNILAGGNASLTTITTSVIGANEDSEGT
Secondary structure 





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Disorder  ??


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   .........130.........140.........150.........160.........170.........180
Sequence  VNVLGGTWRLYDSGNNARPLNVGQSGTGTLNIKQKGHVDGGYLRLGSSTGGVGTVNVEGE
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Disorder 




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   .........190.........200.........210.........220.........230.........240
Sequence  DSVLTTELFEIGSYGTGSLNITDKGYVTSSIVAILGYQAGSNGQVVVEKGGEWLIKNNDS
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Disorder 



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   .........250.........260.........270.........280.........290.........300
Sequence  SIEFQIGNQGTGEATIREGGLVTAENTIIGGNATGIGTLNVQDQDSVITVRRLYNGYFGN
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Disorder  ???


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   .........310.........320.........330.........340.........350.........360
Sequence  GTVNISNNGLINNKEYSLVGVQDGSHGVVNVTDKGHWNFLGTGEAFRYIYIGDAGDGELN
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Disorder 




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   .........370.........380.........390.........400.........410.........420
Sequence  VSSEGKVDSGIITAGMKETGTGNITVKDKNSVITNLGTNLGYDGHGEMNISNQGLVVSNG
Secondary structure 








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Disorder 


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   .........430.........440.........450.........460.........470.........480
Sequence  GSSLGYGETGVGNVSITTGGMWEVNKNVYTTIGVAGVGNLNISDGGKFVSQNITFLGDKA
Secondary structure 




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Disorder  ??

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   .........490.........500.........510.........520.........530.........540
Sequence  SGIGTLNLMDATSSFDTVGINVGNFGSGIVNVSNGATLNSTGYGFIGGNASGKGIVNIST
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Disorder  ???




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   .........550.........560.........570.........580.........590.........600
Sequence  DSLWNLKTSSTNAQLLQVGVLGTGELNITTGGIVKARDTQIALNDKSKGDVRVDGQNSLL
Secondary structure 




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   .........610.........620.........630.........640.........650.........660
Sequence  ETFNMYVGTSGTGTLTLTNNGTLNVEGGEVYLGVFEPAVGTLNIGAAHGEAAADAGFITN
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   .........670.........680.........690.........700.........710.........720
Sequence  ATKVEFGLGEGVFVFNHTNNSDAGYQVDMLITGDDKDGKVIHDAGHTVFNAGNTYSGKTL
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   .........730.........740.........750.........760.........770.........780
Sequence  VNDGLLTIASHTADGVTGMGSSEVTIANPGTLDILASTNSAGDYTLTNALKGDGLMRVQL
Secondary structure 






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Disorder 
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   .........790.........800.........810.........820.........830.........840
Sequence  SSSDKMFGFTHATGTEFAGVAQLKDSTFTLERDNTAALTHAMLQSDSENTTSVKVGEQSI
Secondary structure 





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Disorder  ?



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   .........850.........860.........870.........880.........890.........900
Sequence  GGLAMNGGTIIFDTDIPAATLAEGYISVDTLVVGAGDYTWKGRNYQVNGTGDVLIDVPKP
Secondary structure 

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   .........910.........920.........930.........940.........950.........960
Sequence  WNDPMANNPLTTLNLLEHDDSHVGVQLVKAQTVIGSGGSLTLRDLQGDEVEADKTLHIAQ
Secondary structure 

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   .........970.........980.........990.........1000.........1010.........1020
Sequence  NGTVVAEGDYGFRLTTAPGNGLYVNYGLKALNIHGGQKLTLAEHGGAYGATADMSAKIGG
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  EGDLAINTVRQVSLSNGQNDYQGATYVQMGTLRTDADGALGNTRELNISNAAIVDLNGST
Secondary structure 








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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  QTVETFTGQMGSTVLFKEGALTVNKGGISQGELTGGGNLNVTGGTLAIEGLNARYNALTS
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  ISPNAEVSLDNTQGLGRGNIANDGLLTLKNVTGELRNSISGKGIVSATARTDVELDGDNS
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  RFVGQFNIDTGSALSVNEQKNLGDASVINNGLLTISTERSWAMTHSISGSGDVTKLGTGI
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  LTLNNDSAAYQGTTDIVGGEIAFGSDSAINMASQHINIHNSGVMSGNVTTAGDMNVMPGG
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   .....
Sequence  GTACR
Secondary structure 

SS confidence 




Disorder  ?????
Disorder confidence 




 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1dce chain A domain 2

3D model

Region: 3 - 9
Aligned: 7
Modelled: 7
Confidence: 21.0%
Identity: 57%
Fold: C2 domain-like
Superfamily: Rab geranylgeranyltransferase alpha-subunit, insert domain
Family: Rab geranylgeranyltransferase alpha-subunit, insert domain

Phyre2

PDB 2vxa chain L

3D model

Region: 2 - 8
Aligned: 7
Modelled: 7
Confidence: 16.4%
Identity: 14%
PDB header:flavoprotein
Chain: L: PDB Molecule:dodecin;
PDBTitle: h.halophila dodecin in complex with riboflavin

Phyre2

PDB 2pe4 chain A

3D model

Region: 2 - 10
Aligned: 9
Modelled: 9
Confidence: 15.8%
Identity: 44%
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase-1;
PDBTitle: structure of human hyaluronidase 1, a hyaluronan hydrolyzing enzyme2 involved in tumor growth and angiogenesis

Phyre2

PDB 1b26 chain A domain 2

3D model

Region: 2 - 14
Aligned: 13
Modelled: 13
Confidence: 11.9%
Identity: 31%
Fold: Aminoacid dehydrogenase-like, N-terminal domain
Superfamily: Aminoacid dehydrogenase-like, N-terminal domain
Family: Aminoacid dehydrogenases

Phyre2

PDB 1u46 chain A

3D model

Region: 3 - 19
Aligned: 17
Modelled: 17
Confidence: 11.6%
Identity: 12%
Fold: Protein kinase-like (PK-like)
Superfamily: Protein kinase-like (PK-like)
Family: Protein kinases, catalytic subunit

Phyre2

PDB 1euz chain A domain 2

3D model

Region: 2 - 14
Aligned: 13
Modelled: 13
Confidence: 10.9%
Identity: 23%
Fold: Aminoacid dehydrogenase-like, N-terminal domain
Superfamily: Aminoacid dehydrogenase-like, N-terminal domain
Family: Aminoacid dehydrogenases

Phyre2

PDB 2atm chain A

3D model

Region: 3 - 10
Aligned: 8
Modelled: 8
Confidence: 10.8%
Identity: 38%
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronoglucosaminidase;
PDBTitle: crystal structure of the recombinant allergen ves v 2

Phyre2

PDB 3oqt chain P

3D model

Region: 1 - 8
Aligned: 8
Modelled: 8
Confidence: 10.6%
Identity: 63%
PDB header:flavoprotein
Chain: P: PDB Molecule:rv1498a protein;
PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis

Phyre2

PDB 2hw2 chain A

3D model

Region: 1 - 5
Aligned: 5
Modelled: 5
Confidence: 10.6%
Identity: 80%
PDB header:transferase
Chain: A: PDB Molecule:rifampin adp-ribosyl transferase;
PDBTitle: crystal structure of rifampin adp-ribosyl transferase in2 complex with rifampin

Phyre2

PDB 1bvu chain A domain 2

3D model

Region: 2 - 14
Aligned: 13
Modelled: 13
Confidence: 10.5%
Identity: 23%
Fold: Aminoacid dehydrogenase-like, N-terminal domain
Superfamily: Aminoacid dehydrogenase-like, N-terminal domain
Family: Aminoacid dehydrogenases

Phyre2

PDB 2vag chain A

3D model

Region: 3 - 19
Aligned: 17
Modelled: 17
Confidence: 10.1%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:dual specificity protein kinase clk1;
PDBTitle: crystal structure of di-phosphorylated human clk1 in2 complex with a novel substituted indole inhibitor

Phyre2

PDB 1wv8 chain A domain 1

3D model

Region: 5 - 21
Aligned: 17
Modelled: 17
Confidence: 10.1%
Identity: 24%
Fold: TTHA1013/TTHA0281-like
Superfamily: TTHA1013/TTHA0281-like
Family: TTHA1013-like

Phyre2

PDB 3s2x chain B

3D model

Region: 4 - 9
Aligned: 6
Modelled: 6
Confidence: 9.9%
Identity: 50%
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha;
PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain

Phyre2

PDB 1hwx chain A domain 2

3D model

Region: 1 - 16
Aligned: 16
Modelled: 16
Confidence: 9.7%
Identity: 13%
Fold: Aminoacid dehydrogenase-like, N-terminal domain
Superfamily: Aminoacid dehydrogenase-like, N-terminal domain
Family: Aminoacid dehydrogenases

Phyre2

PDB 1gxy chain A

3D model

Region: 1 - 16
Aligned: 16
Modelled: 16
Confidence: 9.4%
Identity: 25%
Fold: ADP-ribosylation
Superfamily: ADP-ribosylation
Family: Ecto-ART

Phyre2

PDB 1iq9 chain A

3D model

Region: 2 - 17
Aligned: 16
Modelled: 16
Confidence: 9.3%
Identity: 13%
Fold: Snake toxin-like
Superfamily: Snake toxin-like
Family: Snake venom toxins

Phyre2

PDB 1gtm chain A domain 2

3D model

Region: 2 - 14
Aligned: 13
Modelled: 13
Confidence: 9.2%
Identity: 23%
Fold: Aminoacid dehydrogenase-like, N-terminal domain
Superfamily: Aminoacid dehydrogenase-like, N-terminal domain
Family: Aminoacid dehydrogenases

Phyre2

PDB 2hly chain A domain 1

3D model

Region: 2 - 8
Aligned: 7
Modelled: 7
Confidence: 8.9%
Identity: 86%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Atu2299-like

Phyre2

PDB 1bgv chain A domain 2

3D model

Region: 2 - 14
Aligned: 13
Modelled: 13
Confidence: 8.8%
Identity: 38%
Fold: Aminoacid dehydrogenase-like, N-terminal domain
Superfamily: Aminoacid dehydrogenase-like, N-terminal domain
Family: Aminoacid dehydrogenases

Phyre2

PDB 1ntx chain A

3D model

Region: 2 - 17
Aligned: 16
Modelled: 16
Confidence: 8.6%
Identity: 19%
Fold: Snake toxin-like
Superfamily: Snake toxin-like
Family: Snake venom toxins

Phyre2
1

d1dcea2
2

c2vxaL_
3

c2pe4A_
4

d1b26a2
5

d1u46a_
6

d1euza2
7

c2atmA_
8

c3oqtP_
9

c2hw2A_
10

d1bvua2
11

c2vagA_
12

d1wv8a1
13

c3s2xB_
14

d1hwxa2
15

d1gxya_
16

d1iq9a_
17

d1gtma2
18

d2hlya1
19

d1bgva2
20

d1ntxa_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1dcea2



21.0 57 Fold:C2 domain-like
Superfamily:Rab geranylgeranyltransferase alpha-subunit, insert domain
Family:Rab geranylgeranyltransferase alpha-subunit, insert domain
2c2vxaL_



16.4 14 PDB header:flavoprotein
Chain: L: PDB Molecule:dodecin;
PDBTitle: h.halophila dodecin in complex with riboflavin
3c2pe4A_



15.8 44 PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase-1;
PDBTitle: structure of human hyaluronidase 1, a hyaluronan hydrolyzing enzyme2 involved in tumor growth and angiogenesis
4d1b26a2



11.9 31 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
5d1u46a_



11.6 12 Fold:Protein kinase-like (PK-like)
Superfamily:Protein kinase-like (PK-like)
Family:Protein kinases, catalytic subunit
6d1euza2



10.9 23 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
7c2atmA_



10.8 38 PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronoglucosaminidase;
PDBTitle: crystal structure of the recombinant allergen ves v 2
8c3oqtP_



10.6 63 PDB header:flavoprotein
Chain: P: PDB Molecule:rv1498a protein;
PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis
9c2hw2A_



10.6 80 PDB header:transferase
Chain: A: PDB Molecule:rifampin adp-ribosyl transferase;
PDBTitle: crystal structure of rifampin adp-ribosyl transferase in2 complex with rifampin
10d1bvua2



10.5 23 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
11c2vagA_



10.1 12 PDB header:transferase
Chain: A: PDB Molecule:dual specificity protein kinase clk1;
PDBTitle: crystal structure of di-phosphorylated human clk1 in2 complex with a novel substituted indole inhibitor
12d1wv8a1



10.1 24 Fold:TTHA1013/TTHA0281-like
Superfamily:TTHA1013/TTHA0281-like
Family:TTHA1013-like
13c3s2xB_



9.9 50 PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha;
PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain
14d1hwxa2



9.7 13 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
15d1gxya_



9.4 25 Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:Ecto-ART
16d1iq9a_



9.3 13 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
17d1gtma2



9.2 23 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
18d2hlya1



8.9 86 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Atu2299-like
19d1bgva2



8.8 38 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
20d1ntxa_



8.6 19 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
21c3igmA_



not modelled 8.5 33 PDB header:transcription/dna
Chain: A: PDB Molecule:pf14_0633 protein;
PDBTitle: a 2.2a crystal structure of the ap2 domain of pf14_0633 from p.2 falciparum, bound as a domain-swapped dimer to its cognate dna
22d1v9la2



not modelled 8.3 31 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
23d1qu3a1



not modelled 8.2 44 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
24c3fgrB_



not modelled 8.1 43 PDB header:hydrolase
Chain: B: PDB Molecule:putative phospholipase b-like 2 40 kda form;
PDBTitle: two chain form of the 66.3 kda protein at 1.8 angstroem
25d1jq4a_



not modelled 8.0 29 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
26d1jgka_



not modelled 7.8 6 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
27d2byca1



not modelled 7.7 11 Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:BLUF domain
28d2cqha1



not modelled 7.5 60 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
29d1cm7a_



not modelled 7.5 25 Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
30d1uvqb2



not modelled 7.3 22 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
31c4a1dH_



not modelled 7.3 23 PDB header:ribosome
Chain: H: PDB Molecule:rpl35a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4.
32c3izcj_



not modelled 7.2 30 PDB header:ribosome
Chain: J: PDB Molecule:60s ribosomal protein rpl12 (l11p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
33c2zxeB_



not modelled 6.9 60 PDB header:hydrolase/transport protein
Chain: B: PDB Molecule:na+,k+-atpase beta subunit;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
34d1drsa_



not modelled 6.9 50 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Dendroaspin
35c1p0lA_



not modelled 6.8 33 PDB header:ribosome
Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1;
PDBTitle: hp (2-20) substitution gln to trp modification in sds-d252 micelles
36d1l1fa2



not modelled 6.8 13 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
37c3kdpD_



not modelled 6.7 40 PDB header:hydrolase
Chain: D: PDB Molecule:sodium/potassium-transporting atpase subunit beta-1;
PDBTitle: crystal structure of the sodium-potassium pump
38c1hrdA_



not modelled 6.6 38 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase;
PDBTitle: glutamate dehydrogenase
39c1v9lA_



not modelled 6.6 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase;
PDBTitle: l-glutamate dehydrogenase from pyrobaculum islandicum2 complexed with nad
40d1j0ga_



not modelled 6.5 10 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:BM-002-like
41c2jp2A_



not modelled 6.4 18 PDB header:signaling protein
Chain: A: PDB Molecule:sprouty-related, evh1 domain-containing protein
PDBTitle: solution structure and resonance assignment of the n-2 terminal evh1 domain from the human spred2 protein3 (sprouty-related protein with evh1 domain isoform 2)
42c1bvuF_



not modelled 6.4 21 PDB header:oxidoreductase
Chain: F: PDB Molecule:protein (glutamate dehydrogenase);
PDBTitle: glutamate dehydrogenase from thermococcus litoralis
43c3g2bA_



not modelled 6.4 5 PDB header:biosynthetic protein
Chain: A: PDB Molecule:coenzyme pqq synthesis protein d;
PDBTitle: crystal structure of pqqd from xanthomonas campestris
44c2kt9A_



not modelled 6.3 38 PDB header:ribosomal protein
Chain: A: PDB Molecule:probable 30s ribosomal protein psrp-3;
PDBTitle: solution nmr structure of probable 30s ribosomal protein2 psrp-3 (ycf65-like protein) from synechocystis sp. (strain3 pcc 6803), northeast structural genomics consortium target4 target sgr46
45c1nr1A_



not modelled 6.3 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase 1;
PDBTitle: crystal structure of the r463a mutant of human glutamate2 dehydrogenase
46d1ajka_



not modelled 6.3 13 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Glycosyl hydrolases family 16
47d2r99a1



not modelled 6.2 23 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
48d1wxsa1



not modelled 6.2 10 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:BM-002-like
49d1vb0a_



not modelled 6.1 12 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
50d1evha_



not modelled 6.0 27 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
51d2ux9a1



not modelled 6.0 17 Fold:Dodecin subunit-like
Superfamily:Dodecin-like
Family:Dodecin-like
52d2nnab2



not modelled 6.0 24 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
53d2gc9a1



not modelled 5.9 25 Fold:Lipocalins
Superfamily:Lipocalins
Family:Phenolic acid decarboxylase (PAD)
54c2zhzC_



not modelled 5.9 20 PDB header:transferase
Chain: C: PDB Molecule:atp:cob(i)alamin adenosyltransferase, putative;
PDBTitle: crystal structure of a pduo-type atp:cobalamin adenosyltransferase2 from burkholderia thailandensis
55d1fcqa_



not modelled 5.7 50 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Bee venom hyaluronidase
56d2rmca_



not modelled 5.7 29 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
57c3alzB_



not modelled 5.7 50 PDB header:viral protein/membrane protein
Chain: B: PDB Molecule:cdw150;
PDBTitle: crystal structure of the measles virus hemagglutinin bound to its2 cellular receptor slam (form i)
58c3aogA_



not modelled 5.6 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of glutamate dehydrogenase (gdhb) from thermus2 thermophilus (glu bound form)
59d1w8ma_



not modelled 5.6 23 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
60d3ebxa_



not modelled 5.5 13 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
61c2qyzA_



not modelled 5.5 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the uncharacterized protein ctc02137 from2 clostridium tetani e88
62c3gitA_



not modelled 5.5 50 PDB header:transferase
Chain: A: PDB Molecule:carbon monoxide dehydrogenase/acetyl-coa synthase subunit
PDBTitle: crystal structure of a truncated acetyl-coa synthase
63d2pxyd2



not modelled 5.4 24 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
64c2yfqA_



not modelled 5.4 7 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad-specific glutamate dehydrogenase;
PDBTitle: crystal structure of glutamate dehydrogenase from2 peptoniphilus asaccharolyticus
65c3izbD_



not modelled 5.4 16 PDB header:ribosome
Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
66d1ktdb2



not modelled 5.4 26 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
67d2hrva_



not modelled 5.4 19 Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral cysteine protease of trypsin fold
68c3aoeC_



not modelled 5.3 23 PDB header:oxidoreductase
Chain: C: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of hetero-hexameric glutamate dehydrogenase from2 thermus thermophilus (leu bound form)
69d2i1sa1



not modelled 5.3 14 Fold:MM3350-like
Superfamily:MM3350-like
Family:MM3350-like
70d1c8za_



not modelled 5.2 30 Fold:Tubby C-terminal domain-like
Superfamily:Tubby C-terminal domain-like
Family:Transcriptional factor tubby, C-terminal domain
71d1lmia_



not modelled 5.2 44 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Antigen MPT63/MPB63 (immunoprotective extracellular protein)
Family:Antigen MPT63/MPB63 (immunoprotective extracellular protein)
72d1cnza_



not modelled 5.2 25 Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
73d1mujb2



not modelled 5.2 29 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
74c3dy0B_



not modelled 5.2 23 PDB header:blood clotting, hydrolase inhibitor
Chain: B: PDB Molecule:c-terminus plasma serine protease inhibitor;
PDBTitle: crystal structure of cleaved pci bound to heparin
75d1mvka_



not modelled 5.2 50 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
76c3fbxA_



not modelled 5.1 43 PDB header:hydrolase
Chain: A: PDB Molecule:putative phospholipase b-like 2;
PDBTitle: crystal structure of the lysosomal 66.3 kda protein from mouse solved2 by s-sad
77d1i3rb2



not modelled 5.1 26 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
78d2esla1



not modelled 5.1 31 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
79c1lq8H_



not modelled 5.1 23 PDB header:blood clotting
Chain: H: PDB Molecule:plasma serine protease inhibitor;
PDBTitle: crystal structure of cleaved protein c inhibitor

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0