Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	V	T	H	R	Q	R	Y	R	E	K	V	S	Q	M	V	S	W	G	H	W	F	A	L	F	N	I	L	L	S	L	V	I	G	S	R	Y	L	F	I	A	D	W	P	T	T	L	A	G	R	I	Y	S	Y	V	S	I	I	G	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?																										?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	S	F	L	V	F	A	T	Y	L	L	I	L	F	P	L	T	F	I	V	G	S	Q	R	L	M	R	F	L	S	V	I	L	A	T	A	G	M	T	L	L	L	I	D	S	E	V	F	T	R	F	H	L	H	L	N	P	I	V	W
Secondary structure
SS confidence
Disorder																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	L	V	I	N	P	D	E	N	E	M	A	R	D	W	Q	L	M	F	I	S	V	P	V	I	L	L	L	E	L	V	F	A	T	W	S	W	Q	K	L	R	S	L	T	R	R	R	R	F	A	R	P	L	A	A	F	L	F	I	A
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?	?																										?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	I	A	S	H	V	V	Y	I	W	A	D	A	N	F	Y	R	P	I	T	M	Q	R	A	N	L	P	L	S	Y	P	M	T	A	R	R	F	L	E	K	H	G	L	L	D	A	Q	E	Y	Q	R	R	L	I	E	Q	G	N	P	D
Secondary structure
SS confidence
Disorder															?									?																		?			?	?										?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	V	S	V	Q	Y	P	L	S	E	L	R	Y	R	D	M	G	T	G	Q	N	V	L	L	I	T	V	D	G	L	N	Y	S	R	F	E	K	Q	M	P	A	L	A	G	F	A	E	Q	N	I	S	F	T	R	H	M	S	S	G	N
Secondary structure
SS confidence
Disorder		?	?	?									?	?	?	?	?														?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		T	T	D	N	G	I	F	G	L	F	Y	G	I	S	P	S	Y	M	D	G	I	L	S	T	R	T	P	A	A	L	I	T	A	L	N	Q	Q	G	Y	Q	L	G	L	F	S	S	D	G	F	T	S	P	L	Y	R	Q	A	L	L	S
Secondary structure
SS confidence
Disorder																		?	?	?	?	?		?	?		?																							?							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	F	S	M	P	S	V	R	T	Q	S	D	E	Q	T	A	T	Q	W	I	N	W	L	G	R	Y	A	Q	E	D	N	R	W	F	S	W	V	S	F	N	G	T	N	I	D	D	S	N	Q	Q	A	F	A	R	K	Y	S	R	A	A
Secondary structure
SS confidence
Disorder								?																			?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		G	N	V	D	D	Q	I	N	R	V	L	N	A	L	R	D	S	G	K	L	D	N	T	V	V	I	I	T	A	G	R	G	I	P	L	S	E	E	E	E	T	F	D	W	S	H	G	H	L	Q	V	P	L	V	I	H	W	P	G	T
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		P	A	Q	R	I	N	A	L	T	D	H	T	D	L	M	T	T	L	M	Q	R	L	L	H	V	S	T	P	A	S	E	Y	S	Q	G	Q	D	L	F	N	P	Q	R	R	H	Y	W	V	T	A	A	D	N	D	T	L	A	I	T	T
Secondary structure
SS confidence
Disorder						?																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
Sequence		P	K	K	T	L	V	L	N	N	N	G	K	Y	R	T	Y	N	L	R	G	E	R	V	K	D	E	K	P	Q	L	S	L	L	L	Q	V	L	T	D	E	K	R	F	I	A	N
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?	?	?	?	?	?	?															?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ed4 chain A Region: 259 - 586 Aligned: 326 Modelled: 328 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli Phyre2 PDB 3lxq chain B Region: 225 - 579 Aligned: 349 Modelled: 355 Confidence: 100.0% Identity: 16% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a Phyre2 PDB 2qzu chain A Region: 251 - 585 Aligned: 334 Modelled: 335 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 Phyre2 PDB 1hdh chain A Region: 258 - 585 Aligned: 324 Modelled: 328 Confidence: 100.0% Identity: 21% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 1auk chain A Region: 258 - 585 Aligned: 325 Modelled: 328 Confidence: 100.0% Identity: 21% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 1fsu chain A Region: 257 - 586 Aligned: 326 Modelled: 330 Confidence: 100.0% Identity: 15% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 2vqr chain A Region: 259 - 585 Aligned: 322 Modelled: 327 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily Phyre2 PDB 2w8d chain B Region: 230 - 586 Aligned: 352 Modelled: 352 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis Phyre2 PDB 3b5q chain B Region: 258 - 585 Aligned: 323 Modelled: 328 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution Phyre2 PDB 1p49 chain A Region: 257 - 584 Aligned: 324 Modelled: 328 Confidence: 100.0% Identity: 18% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 2w5t chain A Region: 232 - 585 Aligned: 345 Modelled: 354 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. Phyre2 PDB 1o98 chain A domain 2 Region: 258 - 519 Aligned: 246 Modelled: 262 Confidence: 100.0% Identity: 16% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain Phyre2 PDB 2gso chain B Region: 258 - 519 Aligned: 255 Modelled: 262 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate Phyre2 PDB 2zkt chain B Region: 259 - 506 Aligned: 237 Modelled: 248 Confidence: 100.0% Identity: 21% PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii Phyre2 PDB 3m8y chain C Region: 258 - 520 Aligned: 243 Modelled: 258 Confidence: 100.0% Identity: 18% PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation Phyre2 PDB 3q3q chain A Region: 252 - 518 Aligned: 263 Modelled: 267 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1 Phyre2 PDB 2i09 chain A domain 1 Region: 258 - 520 Aligned: 233 Modelled: 258 Confidence: 100.0% Identity: 15% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: DeoB catalytic domain-like Phyre2 PDB 2xr9 chain A Region: 238 - 516 Aligned: 253 Modelled: 259 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) Phyre2 PDB 2xrg chain A Region: 238 - 516 Aligned: 253 Modelled: 259 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor Phyre2 PDB 2i09 chain A Region: 260 - 519 Aligned: 243 Modelled: 255 Confidence: 100.0% Identity: 19% PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans Phyre2 1 c3ed4A_ 2 c3lxqB_ 3 c2qzuA_ 4 d1hdha_ 5 d1auka_ 6 d1fsua_ 7 c2vqrA_ 8 c2w8dB_ 9 c3b5qB_ 10 d1p49a_ 11 c2w5tA_ 12 d1o98a2 13 c2gsoB_ 14 c2zktB_ 15 c3m8yC_ 16 c3q3qA_ 17 d2i09a1 18 c2xr9A_ 19 c2xrgA_ 20 c2i09A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ed4A_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli 2 c3lxqB_ 100.0 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a 3 c2qzuA_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 4 d1hdha_ 100.0 21 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 5 d1auka_ 100.0 21 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 6 d1fsua_ 100.0 15 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 7 c2vqrA_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily 8 c2w8dB_ 100.0 15 PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis 9 c3b5qB_ 100.0 19 PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution 10 d1p49a_ 100.0 18 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 11 c2w5tA_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. 12 d1o98a2 100.0 16 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain 13 c2gsoB_ 100.0 19 PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate 14 c2zktB_ 100.0 21 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii 15 c3m8yC_ 100.0 18 PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation 16 c3q3qA_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1 17 d2i09a1 100.0 15 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:DeoB catalytic domain-like 18 c2xr9A_ 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) 19 c2xrgA_ 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor 20 c2i09A_ 100.0 19 PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans 21 c3szzA_ not modelled 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:phosphonoacetate hydrolase; PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate 22 d1ei6a_ not modelled 100.0 17 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Phosphonoacetate hydrolase 23 c1o98A_ not modelled 99.8 17 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate 24 c3igzB_ not modelled 99.7 14 PDB header:isomerase Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase; PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration 25 c2d1gB_ not modelled 99.7 14 PDB header:hydrolase Chain: B: PDB Molecule:acid phosphatase; PDBTitle: structure of francisella tularensis acid phosphatase a (acpa) bound to2 orthovanadate 26 c2iucB_ not modelled 99.5 21 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5 27 d1y6va1 not modelled 99.3 20 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 28 c3a52A_ not modelled 99.1 19 PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. 29 c2x98A_ not modelled 99.1 20 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 30 c1ew2A_ not modelled 99.0 20 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase; PDBTitle: crystal structure of a human phosphatase 31 c2w0yB_ not modelled 99.0 20 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 32 d1k7ha_ not modelled 98.9 25 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 33 d1zeda1 not modelled 98.9 17 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 34 c3e2dB_ not modelled 98.6 20 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase 35 c3iddA_ not modelled 95.7 18 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: cofactor-independent phosphoglycerate mutase from2 thermoplasma acidophilum dsm 1728 36 d1b4ub_ not modelled 82.9 7 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 37 c3bijC_ not modelled 46.7 4 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein gsu0716; PDBTitle: crystal structure of protein gsu0716 from geobacter2 sulfurreducens. northeast structural genomics target gsr13 38 d2nxfa1 not modelled 25.1 13 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:ADPRibase-Mn-like 39 c3oaaO_ not modelled 19.9 16 PDB header:hydrolase/transport protein Chain: O: PDB Molecule:atp synthase gamma chain; PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon 40 d1usha2 not modelled 17.8 5 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 41 d1tfra2 not modelled 15.8 23 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 42 d1xo1a2 not modelled 15.3 10 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 43 d1fs0g_ not modelled 14.5 14 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 44 d1l5oa_ not modelled 13.5 20 Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 45 d3cu0a1 not modelled 11.5 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase 46 d1j33a_ not modelled 10.4 27 Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 47 c2w6jG_ not modelled 9.8 19 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5. 48 d1cmwa2 not modelled 9.7 27 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 49 d1g8ka1 not modelled 9.3 7 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 50 d1s1qa_ not modelled 9.2 11 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 51 c3hksB_ not modelled 8.9 8 PDB header:translation, rna binding protein Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of eukaryotic translation initiation2 factor eif-5a2 from arabidopsis thaliana 52 d1a3xa3 not modelled 8.1 26 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 53 c2ihnA_ not modelled 7.4 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:ribonuclease h; PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate 54 d2hy1a1 not modelled 7.4 19 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:GpdQ-like 55 c2hy1A_ not modelled 7.4 19 PDB header:hydrolase Chain: A: PDB Molecule:rv0805; PDBTitle: crystal structure of rv0805 56 c2xokG_ not modelled 7.2 16 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial; PDBTitle: refined structure of yeast f1c10 atpase complex to 3 a2 resolution 57 c3ib7A_ not modelled 7.1 17 PDB header:hydrolase Chain: A: PDB Molecule:icc protein; PDBTitle: crystal structure of full length rv0805 58 c2i5nH_ not modelled 6.7 19 PDB header:photosynthesis Chain: H: PDB Molecule:reaction center protein h chain; PDBTitle: 1.96 a x-ray structure of photosynthetic reaction center from2 rhodopseudomonas viridis:crystals grown by microfluidic technique 59 c2qe7G_ not modelled 6.6 26 PDB header:hydrolase Chain: G: PDB Molecule:atp synthase subunit gamma; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 60 d2iv2x1 not modelled 6.5 12 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 61 d2b8ea1 not modelled 6.5 23 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 62 d1okga1 not modelled 6.4 7 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 63 d1qopb_ not modelled 6.4 21 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 64 d1fx0a3 not modelled 6.3 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 65 d1skyb3 not modelled 6.0 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 66 d2jdig1 not modelled 5.9 19 Fold:Pyruvate kinase C-terminal domain-like Superfamily:ATP synthase (F1-ATPase), gamma subunit Family:ATP synthase (F1-ATPase), gamma subunit 67 c3uoaB_ not modelled 5.8 9 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:mucosa-associated lymphoid tissue lymphoma translocation PDBTitle: crystal structure of the malt1 paracaspase (p21 form) 68 c2d0jD_ not modelled 5.6 11 PDB header:transferase Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta- PDBTitle: crystal structure of human glcat-s apo form 69 d2cz4a1 not modelled 5.4 15 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 70 d2jioa1 not modelled 5.4 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 71 c3k1tA_ not modelled 5.3 23 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase gsha; PDBTitle: crystal structure of putative gamma-glutamylcysteine synthetase2 (yp_546622.1) from methylobacillus flagellatus kt at 1.90 a3 resolution 72 c3rceA_ not modelled 5.1 11 PDB header:transferase/peptide Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins; PDBTitle: bacterial oligosaccharyltransferase pglb 73 d1skye3 not modelled 5.1 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0