Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	L	E	A	L	P	K	Y	Y	S	P	K	S	P	K	L	S	D	D	A	P	A	T	G	T	G	C	L	T	I	T	D	V	M	A	A	Q	G	M	V	Q	S	K	A	P	L	G	L	A	L	F	L	A	K	V	G	V	Q	D
Secondary structure
SS confidence
Disorder		?	?															?	?	?	?	?	?	?	?	?	?	?	?	?												?	?	?	?	?									?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	Q	F	A	I	E	G	L	L	N	Y	A	M	A	L	D	N	P	T	L	N	K	L	S	E	E	I	R	L	Q	I	I	P	Y	L	V	S	F	A	F	A	D	Y	S	R	S	A	A	S	K	A	R	C	E	H	C	S	G	T	G
Secondary structure
SS confidence
Disorder															?	?	?	?	?	?	?			?	?			?	?																	?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	Y	N	V	L	R	E	V	V	K	H	Y	R	R	G	E	S	V	I	K	E	E	W	V	K	E	L	C	Q	H	C	H	G	K	G	E	A	S	T	A	C	R	G	C	K	G	K	G	I	V	L	D	E	K	R	T	R	F	H	G
Secondary structure
SS confidence
Disorder												?			?	?	?	?		?	?	?	?	?	?							?	?	?	?					?		?	?	?	?	?	?							?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	P	V	Y	K	I	C	G	R	C	N	G	N	R	F	S	R	L	P	T	T	L	A	R	R	H	V	Q	K	L	V	P	D	L	T	D	Y	Q	W	Y	K	G	Y	A	D	V	I	G	K	L	V	T	K	C	W	Q	E	E	A	Y
Secondary structure
SS confidence
Disorder			?									?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250
Sequence		A	E	A	Q	L	R	K	V	T	R
Secondary structure
SS confidence
Disorder										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nlt chain A Region: 86 - 246 Aligned: 154 Modelled: 161 Confidence: 99.9% Identity: 19% PDB header:protein transport Chain: A: PDB Molecule:mitochondrial protein import protein mas5; PDBTitle: the crystal structure of hsp40 ydj1 Phyre2 PDB 2ctt chain A Region: 89 - 176 Aligned: 88 Modelled: 88 Confidence: 99.7% Identity: 22% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of zinc finger domain from human dnaj2 subfamily a menber 3 Phyre2 PDB 1exk chain A Region: 106 - 173 Aligned: 68 Modelled: 68 Confidence: 99.4% Identity: 24% Fold: DnaJ/Hsp40 cysteine-rich domain Superfamily: DnaJ/Hsp40 cysteine-rich domain Family: DnaJ/Hsp40 cysteine-rich domain Phyre2 PDB 1nlt chain A domain 3 Region: 109 - 172 Aligned: 63 Modelled: 64 Confidence: 99.3% Identity: 22% Fold: DnaJ/Hsp40 cysteine-rich domain Superfamily: DnaJ/Hsp40 cysteine-rich domain Family: DnaJ/Hsp40 cysteine-rich domain Phyre2 PDB 2q2g chain A Region: 151 - 246 Aligned: 90 Modelled: 96 Confidence: 98.0% Identity: 9% PDB header:chaperone Chain: A: PDB Molecule:heat shock 40 kda protein, putative (fragment); PDBTitle: crystal structure of dimerization domain of hsp40 from2 cryptosporidium parvum, cgd2_1800 Phyre2 PDB 3lz8 chain A Region: 151 - 246 Aligned: 88 Modelled: 96 Confidence: 97.7% Identity: 10% PDB header:chaperone Chain: A: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone dnaj from klebsiella pneumoniae2 subsp. pneumoniae mgh 78578 at 2.9 a resolution. Phyre2 PDB 2qld chain A Region: 151 - 246 Aligned: 86 Modelled: 96 Confidence: 97.6% Identity: 15% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 1; PDBTitle: human hsp40 hdj1 Phyre2 PDB 3ld0 chain Q Region: 145 - 171 Aligned: 27 Modelled: 27 Confidence: 97.1% Identity: 37% PDB header:gene regulation Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa; PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions Phyre2 PDB 2k3v chain A Region: 112 - 172 Aligned: 61 Modelled: 61 Confidence: 96.8% Identity: 16% PDB header:electron transport Chain: A: PDB Molecule:tetraheme cytochrome c-type; PDBTitle: solution structure of a tetrahaem cytochrome from2 shewanella frigidimarina Phyre2 PDB 2bx9 chain J Region: 145 - 171 Aligned: 27 Modelled: 27 Confidence: 94.9% Identity: 41% PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions Phyre2 PDB 2fiy chain A domain 1 Region: 130 - 192 Aligned: 63 Modelled: 62 Confidence: 86.7% Identity: 14% Fold: FdhE-like Superfamily: FdhE-like Family: FdhE-like Phyre2 PDB 3apq chain B Region: 6 - 45 Aligned: 37 Modelled: 40 Confidence: 86.2% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of j-trx1 fragment of erdj5 Phyre2 PDB 2kdx chain A Region: 62 - 142 Aligned: 81 Modelled: 81 Confidence: 81.0% Identity: 19% PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein Phyre2 PDB 3pih chain A Region: 107 - 155 Aligned: 49 Modelled: 49 Confidence: 80.0% Identity: 37% PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna Phyre2 PDB 1fpo chain A Region: 6 - 38 Aligned: 33 Modelled: 33 Confidence: 78.0% Identity: 15% PDB header:chaperone Chain: A: PDB Molecule:chaperone protein hscb; PDBTitle: hsc20 (hscb), a j-type co-chaperone from e. coli Phyre2 PDB 3hho chain A Region: 6 - 38 Aligned: 33 Modelled: 33 Confidence: 74.4% Identity: 12% PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb homolog; PDBTitle: chaperone hscb from vibrio cholerae Phyre2 PDB 3bvo chain A Region: 6 - 38 Aligned: 33 Modelled: 33 Confidence: 73.4% Identity: 6% PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb Phyre2 PDB 2b26 chain A Region: 151 - 246 Aligned: 75 Modelled: 96 Confidence: 70.5% Identity: 20% PDB header:chaperone/protein transport Chain: A: PDB Molecule:sis1 protein; PDBTitle: the crystal structure of the protein complex of yeast hsp402 sis1 and hsp70 ssa1 Phyre2 PDB 1c3g chain A domain 1 Region: 151 - 217 Aligned: 64 Modelled: 67 Confidence: 69.6% Identity: 14% Fold: HSP40/DnaJ peptide-binding domain Superfamily: HSP40/DnaJ peptide-binding domain Family: HSP40/DnaJ peptide-binding domain Phyre2 PDB 1gh6 chain A Region: 6 - 43 Aligned: 35 Modelled: 38 Confidence: 69.4% Identity: 14% Fold: Long alpha-hairpin Superfamily: Chaperone J-domain Family: Chaperone J-domain Phyre2 PDB 2ctq chain A Region: 4 - 79 Aligned: 61 Modelled: 61 Confidence: 60.7% Identity: 15% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily c2 menber 12 Phyre2 1 c1nltA_ 2 c2cttA_ 3 d1exka_ 4 d1nlta3 5 c2q2gA_ 6 c3lz8A_ 7 c2qldA_ 8 c3ld0Q_ 9 c2k3vA_ 10 c2bx9J_ 11 d2fiya1 12 c3apqB_ 13 c2kdxA_ 14 c3pihA_ 15 c1fpoA_ 16 c3hhoA_ 17 c3bvoA_ 18 c2b26A_ 19 d1c3ga1 20 d1gh6a_ 21 22 23 24 c2ctqA_ 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1nltA_ 99.9 19 PDB header:protein transport Chain: A: PDB Molecule:mitochondrial protein import protein mas5; PDBTitle: the crystal structure of hsp40 ydj1 2 c2cttA_ 99.7 22 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of zinc finger domain from human dnaj2 subfamily a menber 3 3 d1exka_ 99.4 24 Fold:DnaJ/Hsp40 cysteine-rich domain Superfamily:DnaJ/Hsp40 cysteine-rich domain Family:DnaJ/Hsp40 cysteine-rich domain 4 d1nlta3 99.3 22 Fold:DnaJ/Hsp40 cysteine-rich domain Superfamily:DnaJ/Hsp40 cysteine-rich domain Family:DnaJ/Hsp40 cysteine-rich domain 5 c2q2gA_ 98.0 9 PDB header:chaperone Chain: A: PDB Molecule:heat shock 40 kda protein, putative (fragment); PDBTitle: crystal structure of dimerization domain of hsp40 from2 cryptosporidium parvum, cgd2_1800 6 c3lz8A_ 97.7 10 PDB header:chaperone Chain: A: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone dnaj from klebsiella pneumoniae2 subsp. pneumoniae mgh 78578 at 2.9 a resolution. 7 c2qldA_ 97.6 15 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 1; PDBTitle: human hsp40 hdj1 8 c3ld0Q_ 97.1 37 PDB header:gene regulation Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa; PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions 9 c2k3vA_ 96.8 16 PDB header:electron transport Chain: A: PDB Molecule:tetraheme cytochrome c-type; PDBTitle: solution structure of a tetrahaem cytochrome from2 shewanella frigidimarina 10 c2bx9J_ 94.9 41 PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions 11 d2fiya1 86.7 14 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 12 c3apqB_ 86.2 19 PDB header:oxidoreductase Chain: B: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of j-trx1 fragment of erdj5 13 c2kdxA_ 81.0 19 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 14 c3pihA_ 80.0 37 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 15 c1fpoA_ 78.0 15 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein hscb; PDBTitle: hsc20 (hscb), a j-type co-chaperone from e. coli 16 c3hhoA_ 74.4 12 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb homolog; PDBTitle: chaperone hscb from vibrio cholerae 17 c3bvoA_ 73.4 6 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 18 c2b26A_ 70.5 20 PDB header:chaperone/protein transport Chain: A: PDB Molecule:sis1 protein; PDBTitle: the crystal structure of the protein complex of yeast hsp402 sis1 and hsp70 ssa1 19 d1c3ga1 69.6 14 Fold:HSP40/DnaJ peptide-binding domain Superfamily:HSP40/DnaJ peptide-binding domain Family:HSP40/DnaJ peptide-binding domain 20 d1gh6a_ 69.4 14 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 21 c2cugA_ not modelled 64.3 9 PDB header:chaperone Chain: A: PDB Molecule:mkiaa0962 protein; PDBTitle: solution structure of the j domain of the pseudo dnaj2 protein, mouse hypothetical mkiaa0962 22 c2l6lA_ not modelled 62.7 9 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 24; PDBTitle: solution structure of human j-protein co-chaperone, dph4 23 d1hdja_ not modelled 62.5 11 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 24 c2ctqA_ 60.7 15 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily c2 menber 12 25 c1bq0A_ not modelled 57.9 17 PDB header:chaperone Chain: A: PDB Molecule:dnaj; PDBTitle: j-domain (residues 1-77) of the escherichia coli n-terminal2 fragment (residues 1-104) of the molecular chaperone dnaj,3 nmr, 20 structures 26 c2o37A_ not modelled 54.9 15 PDB header:chaperone Chain: A: PDB Molecule:protein sis1; PDBTitle: j-domain of sis1 protein, hsp40 co-chaperone from2 saccharomyces cerevisiae. 27 c2ctrA_ not modelled 53.7 21 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 9; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 9 28 c3a44D_ not modelled 52.8 14 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 29 c2ys8A_ not modelled 51.9 7 PDB header:protein binding Chain: A: PDB Molecule:rab-related gtp-binding protein rabj; PDBTitle: solution structure of the dnaj-like domain from human ras-2 associated protein rap1 30 d1p9ra_ not modelled 49.8 26 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 31 c3trzE_ not modelled 48.0 24 PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element 32 c2dn9A_ not modelled 47.0 13 PDB header:apoptosis, chaperone Chain: A: PDB Molecule:dnaj homolog subfamily a member 3; PDBTitle: solution structure of j-domain from the dnaj homolog, human2 tid1 protein 33 d1nz6a_ not modelled 45.6 6 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 34 c2yuaA_ not modelled 44.5 8 PDB header:chaperone Chain: A: PDB Molecule:williams-beuren syndrome chromosome region 18 PDBTitle: solution structure of the dnaj domain from human williams-2 beuren syndrome chromosome region 18 protein 35 c2kqxA_ not modelled 43.1 21 PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa 36 d1fpoa1 not modelled 40.7 24 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 37 c2qsaA_ not modelled 39.5 10 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog dnj-2; PDBTitle: crystal structure of j-domain of dnaj homolog dnj-2 precursor from2 c.elegans. 38 c2ctwA_ not modelled 38.1 21 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 5; PDBTitle: solution structure of j-domain from mouse dnaj subfamily c2 menber 5 39 d1iura_ not modelled 37.8 22 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 40 c2k2dA_ not modelled 37.8 29 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c 41 c2lgwA_ not modelled 36.9 12 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 2; PDBTitle: solution structure of the j domain of hsj1a 42 d1xbla_ not modelled 36.8 17 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 43 d1qypa_ not modelled 35.4 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 44 d1wjza_ not modelled 34.7 11 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 45 c2dmxA_ not modelled 33.2 10 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 8; PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8 46 d1tfia_ not modelled 30.1 20 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 47 c2ctpA_ not modelled 29.0 13 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 12; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 12 48 c2jrpA_ not modelled 27.7 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 49 c2jneA_ not modelled 26.7 14 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 50 d2jnea1 not modelled 26.7 14 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 51 c2opfA_ not modelled 23.7 8 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 52 d1aafa_ not modelled 23.7 20 Fold:Retrovirus zinc finger-like domains Superfamily:Retrovirus zinc finger-like domains Family:Retrovirus zinc finger-like domains 53 d1zbdb_ not modelled 23.6 18 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 54 c1ee8A_ not modelled 23.4 24 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 55 c2ochA_ not modelled 22.1 11 PDB header:chaperone Chain: A: PDB Molecule:hypothetical protein dnj-12; PDBTitle: j-domain of dnj-12 from caenorhabditis elegans 56 d1fafa_ not modelled 20.4 13 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 57 d1twfi2 not modelled 20.0 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 58 d1ee8a3 not modelled 18.0 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 59 c2jvnA_ not modelled 17.7 25 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: domain c of human parp-1 60 c3hq7A_ not modelled 17.7 25 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant 61 c2riqA_ not modelled 17.2 25 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 62 c1yuzB_ not modelled 16.7 23 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 63 c2qkdA_ not modelled 15.0 8 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains 64 c2c4rL_ not modelled 14.9 16 PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e 65 d1pfva3 not modelled 14.8 21 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 66 c2cqfA_ not modelled 14.6 27 PDB header:transcription Chain: A: PDB Molecule:rna-binding protein lin-28; PDBTitle: solution structure of the zinc-finger domain in lin-28 67 d2k4xa1 not modelled 14.3 12 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 68 c2ihxA_ not modelled 14.1 23 PDB header:viral protein/rna Chain: A: PDB Molecule:nucleocapsid (nc) protein; PDBTitle: solution structure of the rous sarcoma virus nucleocapsid2 protein:upsi rna packaging signal complex 69 d1jlza_ not modelled 13.7 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 70 c1jlzA_ not modelled 13.7 38 PDB header:toxin Chain: A: PDB Molecule:tityustoxin alpha-ktx; PDBTitle: solution structure of a k+-channel blocker from the2 scorpion toxin of tityus cambridgei 71 d1hk8a_ not modelled 13.6 25 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 72 c1hk8A_ not modelled 13.6 25 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 73 d1k3xa3 not modelled 13.6 30 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 74 c3h0gI_ not modelled 13.2 17 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 75 c3gn5B_ not modelled 13.2 21 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 76 c2gb5B_ not modelled 13.0 26 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 77 c3k7aM_ not modelled 12.9 15 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 78 c2c1uB_ not modelled 12.5 25 PDB header:oxidoreductase Chain: B: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form 79 c2e2zA_ not modelled 12.4 25 PDB header:protein transport, chaperone regulator Chain: A: PDB Molecule:tim15; PDBTitle: solution nmr structure of yeast tim15, co-chaperone of2 mitochondrial hsp70 80 d2cpga_ not modelled 12.2 19 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 81 c1i3qI_ not modelled 12.1 17 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 82 c3cc4Z_ not modelled 11.7 28 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 83 c2pf4E_ not modelled 11.5 11 PDB header:hydrolase regulator/viral protein Chain: E: PDB Molecule:small t antigen; PDBTitle: crystal structure of the full-length simian virus 40 small t antigen2 complexed with the protein phosphatase 2a aalpha subunit 84 d1wgea1 not modelled 11.4 11 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 85 d2ey4e1 not modelled 11.4 21 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 86 d1pfta_ not modelled 11.2 15 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 87 c1y1yS_ not modelled 10.8 25 PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex 88 c1pqvS_ not modelled 10.6 25 PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex 89 c2li8A_ not modelled 10.5 23 PDB header:transcription/rna Chain: A: PDB Molecule:protein lin-28 homolog a; PDBTitle: the solution structure of the lin28-znf domains bound to aggagau of2 pre-let-7 mirna 90 d1nlta2 not modelled 10.1 17 Fold:HSP40/DnaJ peptide-binding domain Superfamily:HSP40/DnaJ peptide-binding domain Family:HSP40/DnaJ peptide-binding domain 91 c3nybB_ not modelled 10.0 20 PDB header:transferase/rna binding protein Chain: B: PDB Molecule:protein air2; PDBTitle: structure and function of the polymerase core of tramp, a rna2 surveillance complex 92 c1nmlA_ not modelled 9.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0) 93 d2zjrz1 not modelled 9.5 24 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 94 d1iqca1 not modelled 9.1 24 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 95 c3o5cA_ not modelled 9.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis 96 d1ibia1 not modelled 8.9 26 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 97 d1nlta1 not modelled 8.4 15 Fold:HSP40/DnaJ peptide-binding domain Superfamily:HSP40/DnaJ peptide-binding domain Family:HSP40/DnaJ peptide-binding domain 98 d1nmla1 not modelled 8.4 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 99 d1dl6a_ not modelled 8.3 7 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0