Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ9Y6P5
DateWed Jun 6 09:39:41 BST 2012
Unique Job IDdf68eae108a09dd4

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2pfxa1
Top template information
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
Confidence and coverage
Confidence: 99.9% Coverage: 36%
177 residues ( 36% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRLAAAANEAYTAPLAVSGLLGCKQCGGGRDQDEELGIRIPRPLGQGPSRFIPEKEILQV
Secondary structure 
SS confidence 
Disorder  ???????????????
??????????????????????????????????
???????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  GSEDAQMHALFADSFAALGRLDNITLVMVFHPQYLESFLKTQHYLLQMDGPLPLHYRHYI
Secondary structure 
SS confidence 
Disorder  ????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  GIMAAARHQCSYLVNLHVNDFLHVGGDPKWLNGLENAPQKLQNLGELNKVLAHRPWLITK
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  EHIEGLLKAEEHSWSLAELVHAVVLLTHYHSLASFTFGCGISPEIHCDGGHTFRPPSVSN
Secondary structure 
SS confidence 
Disorder 
????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  YCICDITNGNHSVDEMPVNSAENVSVSDSFFEVEALMEKMRQLQECRDEEEASQEEMASR
Secondary structure 
SS confidence 
Disorder  ????????????
?
?????????????????
????????????
???
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  FEIEKRESMFVFSSDDEEVTPARAVSRHFEDTSYGYKDFSRHGMHVPTFRVQDYCWEDHG
Secondary structure 
SS confidence 
Disorder  ????????
???????????
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  YSLVNRLYPDVGQLIDEKFHIAYNLTYNTMAMHKDVDTSMLRRAIWNYIHCMFGIRYDDY
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  DYGEINQLLDRSFKVYIKTVVCTPEKVTKRMYDSFWRQFKHSEKVHVNLLLIEARMQAEL
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........490..
Sequence  LYALRAITRYMT
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2pfx chain A domain 1

3D model

Region: 41 - 229
Aligned: 177
Modelled: 176
Confidence: 99.9%
Identity: 15%
Fold: AhpD-like
Superfamily: AhpD-like
Family: Atu0492-like

Phyre2

PDB 3c1l chain B

3D model

Region: 58 - 226
Aligned: 166
Modelled: 169
Confidence: 99.9%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105;
PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution

Phyre2

PDB 2oyo chain A domain 1

3D model

Region: 49 - 224
Aligned: 168
Modelled: 168
Confidence: 99.8%
Identity: 17%
Fold: AhpD-like
Superfamily: AhpD-like
Family: Atu0492-like

Phyre2

PDB 2prr chain A domain 1

3D model

Region: 45 - 224
Aligned: 172
Modelled: 180
Confidence: 99.8%
Identity: 17%
Fold: AhpD-like
Superfamily: AhpD-like
Family: Atu0492-like

Phyre2

PDB 3lvy chain B

3D model

Region: 49 - 224
Aligned: 166
Modelled: 176
Confidence: 99.7%
Identity: 15%
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans

Phyre2

PDB 2o4d chain A domain 1

3D model

Region: 85 - 224
Aligned: 135
Modelled: 140
Confidence: 99.1%
Identity: 18%
Fold: AhpD-like
Superfamily: AhpD-like
Family: Atu0492-like

Phyre2

PDB 2ouw chain A domain 1

3D model

Region: 58 - 224
Aligned: 119
Modelled: 122
Confidence: 99.0%
Identity: 17%
Fold: AhpD-like
Superfamily: AhpD-like
Family: TTHA0727-like

Phyre2

PDB 2gmy chain A domain 1

3D model

Region: 85 - 226
Aligned: 136
Modelled: 142
Confidence: 98.8%
Identity: 18%
Fold: AhpD-like
Superfamily: AhpD-like
Family: Atu0492-like

Phyre2

PDB 2qeu chain A

3D model

Region: 62 - 149
Aligned: 88
Modelled: 88
Confidence: 97.6%
Identity: 16%
PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution

Phyre2

PDB 2cwq chain A domain 1

3D model

Region: 64 - 149
Aligned: 86
Modelled: 86
Confidence: 97.5%
Identity: 16%
Fold: AhpD-like
Superfamily: AhpD-like
Family: TTHA0727-like

Phyre2

PDB 3bey chain C

3D model

Region: 86 - 149
Aligned: 63
Modelled: 64
Confidence: 96.9%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217

Phyre2

PDB 3d7i chain B

3D model

Region: 83 - 225
Aligned: 95
Modelled: 96
Confidence: 96.8%
Identity: 12%
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution

Phyre2

PDB 1p8c chain D

3D model

Region: 80 - 149
Aligned: 69
Modelled: 70
Confidence: 96.8%
Identity: 14%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima

Phyre2

PDB 1vke chain A

3D model

Region: 91 - 149
Aligned: 58
Modelled: 59
Confidence: 95.7%
Identity: 14%
Fold: AhpD-like
Superfamily: AhpD-like
Family: CMD-like

Phyre2

PDB 1vke chain B

3D model

Region: 96 - 149
Aligned: 53
Modelled: 54
Confidence: 95.3%
Identity: 15%
Fold: AhpD-like
Superfamily: AhpD-like
Family: CMD-like

Phyre2

PDB 2q0t chain A domain 1

3D model

Region: 56 - 149
Aligned: 91
Modelled: 94
Confidence: 94.3%
Identity: 15%
Fold: AhpD-like
Superfamily: AhpD-like
Family: AhpD

Phyre2

PDB 2af7 chain A domain 1

3D model

Region: 155 - 225
Aligned: 68
Modelled: 71
Confidence: 79.5%
Identity: 19%
Fold: AhpD-like
Superfamily: AhpD-like
Family: CMD-like

Phyre2

PDB 2r8r chain B

3D model

Region: 124 - 195
Aligned: 72
Modelled: 72
Confidence: 54.4%
Identity: 25%
PDB header:transferase
Chain: B: PDB Molecule:sensor protein;
PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000

Phyre2

PDB 1knc chain A

3D model

Region: 84 - 218
Aligned: 130
Modelled: 135
Confidence: 38.8%
Identity: 14%
Fold: AhpD-like
Superfamily: AhpD-like
Family: AhpD

Phyre2

PDB 1ckx chain A

3D model

Region: 412 - 427
Aligned: 16
Modelled: 16
Confidence: 31.6%
Identity: 38%
PDB header:metal transport
Chain: A: PDB Molecule:cystic fibrosis transmembrane conductance
PDBTitle: cystic fibrosis transmembrane conductance regulator:2 solution structures of peptides based on the phe508 region,3 the most common site of disease-causing delta-f508 mutation

Phyre2
1
d2pfxa1
2
c3c1lB_
3
d2oyoa1
4
d2prra1
5
c3lvyB_
6
d2o4da1
7
d2ouwa1
8
d2gmya1
9
c2qeuA_
10
d2cwqa1
11
c3beyC_
12
c3d7iB_
13
c1p8cD_
14
d1vkea_
15
d1vkeb_
16
d2q0ta1
17
d2af7a1
18
c2r8rB_
19
d1knca_
20
c1ckxA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
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95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2pfxa1
99.9 15 Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
2c3c1lB_
99.9 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105;
PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution
3d2oyoa1
99.8 17 Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
4d2prra1
99.8 17 Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
5c3lvyB_
99.7 15 PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans
6d2o4da1
99.1 18 Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
7d2ouwa1
99.0 17 Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
8d2gmya1
98.8 18 Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
9c2qeuA_
97.6 16 PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
10d2cwqa1
97.5 16 Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
11c3beyC_
96.9 17 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
12c3d7iB_
96.8 12 PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution
13c1p8cD_
96.8 14 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima
14d1vkea_
95.7 14 Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
15d1vkeb_
95.3 15 Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
16d2q0ta1
94.3 15 Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
17d2af7a1
79.5 19 Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
18c2r8rB_
54.4 25 PDB header:transferase
Chain: B: PDB Molecule:sensor protein;
PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000
19d1knca_
38.8 14 Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
20c1ckxA_
31.6 38 PDB header:metal transport
Chain: A: PDB Molecule:cystic fibrosis transmembrane conductance
PDBTitle: cystic fibrosis transmembrane conductance regulator:2 solution structures of peptides based on the phe508 region,3 the most common site of disease-causing delta-f508 mutation
21c3ntsB_
not modelled 21.6 39 PDB header:transferase
Chain: B: PDB Molecule:vsdc;
PDBTitle: catalytic domain of vsdc from aeromonas hydrophila
22c2dgxA_
not modelled 17.6 17 PDB header:rna binding protein
Chain: A: PDB Molecule:kiaa0430 protein;
PDBTitle: solution structure of the rna recognition motif in kiaa04302 protein
23c3k1tA_
not modelled 17.1 30 PDB header:ligase
Chain: A: PDB Molecule:glutamate--cysteine ligase gsha;
PDBTitle: crystal structure of putative gamma-glutamylcysteine synthetase2 (yp_546622.1) from methylobacillus flagellatus kt at 1.90 a3 resolution
24c1ckwA_
not modelled 16.7 31 PDB header:metal transport
Chain: A: PDB Molecule:protein (cystic fibrosis transmembrane
PDBTitle: cystic fibrosis transmembrane conductance regulator:2 solution structures of peptides based on the phe508 region,3 the most common site of disease-causing delta-f508 mutation
25d1hw8c2
not modelled 16.2 24 Fold:Substrate-binding domain of HMG-CoA reductase
Superfamily:Substrate-binding domain of HMG-CoA reductase
Family:Substrate-binding domain of HMG-CoA reductase
26c3c18B_
not modelled 15.2 13 PDB header:transferase
Chain: B: PDB Molecule:nucleotidyltransferase-like protein;
PDBTitle: crystal structure of nucleotidyltransferase-like protein2 (zp_00538802.1) from exiguobacterium sibiricum 255-15 at 1.90 a3 resolution
27c2pehA_
not modelled 14.3 12 PDB header:protein binding
Chain: A: PDB Molecule:splicing factor 45;
PDBTitle: crystal structure of the uhm domain of human spf45 in complex with2 sf3b155-ulm5
28c1ponB_
not modelled 12.3 38 PDB header:calcium-binding protein
Chain: B: PDB Molecule:troponin c;
PDBTitle: site iii-site iv troponin c heterodimer, nmr
29c3btpA_
not modelled 11.1 35 PDB header:dna binding protein, chaperone
Chain: A: PDB Molecule:single-strand dna-binding protein;
PDBTitle: crystal structure of agrobacterium tumefaciens vire2 in complex with2 its chaperone vire1: a novel fold and implications for dna binding
30d1zk8a2
not modelled 11.1 12 Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
31d1sbxa_
not modelled 10.5 25 Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Dachshund-homology domain
32c3f4mA_
not modelled 10.1 18 PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 8-
PDBTitle: crystal structure of tipe2
33c3kx6C_
not modelled 9.8 35 PDB header:lyase
Chain: C: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: crystal structure of fructose-1,6-bisphosphate aldolase from babesia2 bovis at 2.1a resolution
34c2qb0D_
not modelled 9.4 23 PDB header:hydrolase regulator
Chain: D: PDB Molecule:telsam domain - lysozyme chimera;
PDBTitle: structure of the 2tel crystallization module fused to t4 lysozyme with2 an ala-gly-pro linker.
35c2eapA_
not modelled 9.4 21 PDB header:signaling protein
Chain: A: PDB Molecule:lymphocyte cytosolic protein 2;
PDBTitle: solution structure of the n-terminal sam-domain of human2 lymphocyte cytosolic protein 2
36c1zzaA_
not modelled 9.3 26 PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
37d1rz4a1
not modelled 9.1 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
38c1rue4_
not modelled 8.9 33 PDB header:virus
Chain: 4: PDB Molecule:rhinovirus 14;
PDBTitle: rhinovirus 14 site directed mutant n1219a complexed with2 antiviral compound win 52035
39c3jvfC_
not modelled 8.6 24 PDB header:signaling protein / cytokine
Chain: C: PDB Molecule:interleukin-17 receptor a;
PDBTitle: crystal structure of an interleukin-17 receptor complex
40d1wj7a1
not modelled 8.4 36 Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
41d1zpya1
not modelled 8.3 14 Fold:Ferritin-like
Superfamily:Ferritin-like
Family:half-ferritin
42d1jmsa4
not modelled 8.2 27 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
43d2ce7a2
not modelled 8.2 7 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
44c3thfA_
not modelled 8.2 27 PDB header:actin-binding protein/protein binding
Chain: A: PDB Molecule:protein shroom;
PDBTitle: crystal structure of the sd2 domain from drosophila shroom
45c1dgi4_
not modelled 8.2 39 PDB header:virus/viral protein, receptor
Chain: 4: PDB Molecule:vp4;
PDB Fragment:poliovirus fragments vp1,vp2,vp3,vp4; PDBTitle:
46c1bev4_
not modelled 8.2 36 PDB header:virus
Chain: 4: PDB Molecule:bovine enterovirus coat proteins vp1 to vp4;
PDBTitle: bovine enterovirus vg-5-27
47c3pgwP_
not modelled 8.1 15 PDB header:splicing/dna/rna
Chain: P: PDB Molecule:u1-a;
PDBTitle: crystal structure of human u1 snrnp
48c3vbhD_
not modelled 7.8 27 PDB header:virus
Chain: D: PDB Molecule:genome polyprotein, capsid protein vp4;
PDBTitle: crystal structure of formaldehyde treated human enterovirus 71 (space2 group r32)
49d1jmxa2
not modelled 7.8 31 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
50c3odnA_
not modelled 7.7 15 PDB header:membrane protein
Chain: A: PDB Molecule:dally-like protein;
PDBTitle: the crystal structure of drosophila dally-like protein core domain
51c3eq5G_
not modelled 7.6 24 PDB header:signaling protein
Chain: G: PDB Molecule:ski-like protein;
PDBTitle: crystal structure of fragment 137 to 238 of the human ski-like protein
52d1sxja1
not modelled 7.3 31 Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
53d2vana2
not modelled 7.3 9 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
54c1jew4_
not modelled 7.2 39 PDB header:virus/receptor
Chain: 4: PDB Molecule:coxsackievirus capsid, coat protein vp4;
PDB Fragment:residues 21-140; PDBTitle: cryo-em structure of coxsackievirus b3(m strain) with its2 cellular receptor, coxsackievirus and adenovirus receptor3 (car).
55c1hwjB_
not modelled 7.2 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:hmg-coa reductase;
PDBTitle: complex of the catalytic portion of human hmg-coa reductase2 with cerivastatin
56c3kf9D_
not modelled 7.1 31 PDB header:cell cycle/calcium-binding protein
Chain: D: PDB Molecule:myosin light chain kinase 2, skeletal/cardiac muscle;
PDBTitle: crystal structure of the sdcen/skmlck complex
57c2bbnB_
not modelled 7.1 31 PDB header:calcium-binding protein
Chain: B: PDB Molecule:myosin light chain kinase;
PDBTitle: solution structure of a calmodulin-target peptide complex2 by multidimensional nmr
58c2bbmB_
not modelled 7.1 31 PDB header:calcium-binding protein
Chain: B: PDB Molecule:myosin light chain kinase;
PDBTitle: solution structure of a calmodulin-target peptide complex2 by multidimensional nmr
59c3kf9B_
not modelled 7.0 31 PDB header:cell cycle/calcium-binding protein
Chain: B: PDB Molecule:myosin light chain kinase 2, skeletal/cardiac muscle;
PDBTitle: crystal structure of the sdcen/skmlck complex
60c1us7B_
not modelled 6.6 21 PDB header:chaperone
Chain: B: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: complex of hsp90 and p50
61d1us7b_
not modelled 6.6 21 Fold:Hsp90 co-chaperone CDC37
Superfamily:Hsp90 co-chaperone CDC37
Family:Hsp90 co-chaperone CDC37
62d1ussa_
not modelled 6.6 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Linker histone H1/H5
63c2ee7A_
not modelled 6.4 26 PDB header:structural protein
Chain: A: PDB Molecule:sperm flagellar protein 1;
PDBTitle: solution structure of the ch domain from human sperm2 flagellar protein 1
64c1g2yC_
not modelled 6.4 25 PDB header:transcription
Chain: C: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: hnf-1alpha dimerization domain, with selenomethionine2 substitued at leu 12
65c2la3A_
not modelled 6.3 29 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the nmr structure of the protein np_344798.1 reveals a cca-adding2 enzyme head domain
66c1g2yB_
not modelled 6.3 25 PDB header:transcription
Chain: B: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: hnf-1alpha dimerization domain, with selenomethionine2 substitued at leu 12
67c1g2yD_
not modelled 6.3 25 PDB header:transcription
Chain: D: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: hnf-1alpha dimerization domain, with selenomethionine2 substitued at leu 12
68c2ihmA_
not modelled 6.1 36 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide
69d2bcqa3
not modelled 6.1 18 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
70c1g2yA_
not modelled 6.1 25 PDB header:transcription
Chain: A: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: hnf-1alpha dimerization domain, with selenomethionine2 substitued at leu 12
71d1g2ya_
not modelled 6.1 25 Fold:Dimerisation interlock
Superfamily:Dimerization cofactor of HNF-1 alpha
Family:Dimerization cofactor of HNF-1 alpha
72d2fmpa3
not modelled 6.0 9 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
73c2jmfA_
not modelled 6.0 45 PDB header:ligase/signaling protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase suppressor of deltex;
PDBTitle: solution structure of the su(dx) ww4- notch py peptide2 complex
74d2jmfa1
not modelled 6.0 57 Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
75d1id3b_
not modelled 5.9 21 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
76c3c2qA_
not modelled 5.9 50 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of conserved putative lor/sdh protein2 from methanococcus maripaludis s2
77c2kneB_
not modelled 5.8 18 PDB header:metal transport
Chain: B: PDB Molecule:atpase, ca++ transporting, plasma membrane 4;
PDBTitle: calmodulin wraps around its binding domain in the plasma2 membrane ca2+ pump anchored by a novel 18-1 motif
78d1hrti_
not modelled 5.8 32 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Leech antihemostatic proteins
Family:Hirudin-like
79c3ty8A_
not modelled 5.8 29 PDB header:transferase
Chain: A: PDB Molecule:polynucleotide 2',3'-cyclic phosphate phosphodiesterase /
PDBTitle: crystal structure of c. thermocellum pnkp ligase domain apo form
80c2krcA_
not modelled 5.7 25 PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta;
PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase
81c2zt9E_
not modelled 5.7 27 PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
82c2xpnA_
not modelled 5.7 26 PDB header:transcription
Chain: A: PDB Molecule:iws1;
PDBTitle: crystal structure of a spt6-iws1(spn1) complex from2 encephalitozoon cuniculi, form i
83c3h6pD_
not modelled 5.7 32 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:esat-6-like protein esxr;
PDBTitle: crystal structure of rv3019c-rv3020c from mycobacterium tuberculosis
84d4htci_
not modelled 5.7 32 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Leech antihemostatic proteins
Family:Hirudin-like
85d1ojqa_
not modelled 5.6 27 Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:ADP-ribosylating toxins
86c1kdhA_
not modelled 5.6 27 PDB header:transferase/dna
Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short
PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
87c1f93H_
not modelled 5.5 25 PDB header:transcription
Chain: H: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: crystal structure of a complex between the dimerization2 domain of hnf-1 alpha and the coactivator dcoh
88c3i3nA_
not modelled 5.4 19 PDB header:protein binding
Chain: A: PDB Molecule:kelch-like protein 11;
PDBTitle: crystal structure of the btb-back domains of human klhl11
89d1danl3
not modelled 5.4 58 Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
90d1afwa2
not modelled 5.4 26 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
91d1f93f_
not modelled 5.4 25 Fold:Dimerisation interlock
Superfamily:Dimerization cofactor of HNF-1 alpha
Family:Dimerization cofactor of HNF-1 alpha
92c1f93F_
not modelled 5.4 25 PDB header:transcription
Chain: F: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: crystal structure of a complex between the dimerization2 domain of hnf-1 alpha and the coactivator dcoh
93d1jb0j_
not modelled 5.4 63 Fold:Single transmembrane helix
Superfamily:Subunit IX of photosystem I reaction centre, PsaJ
Family:Subunit IX of photosystem I reaction centre, PsaJ
94d1iooa_
not modelled 5.4 16 Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
95d1bgfa_
not modelled 5.3 27 Fold:Transcription factor STAT-4 N-domain
Superfamily:Transcription factor STAT-4 N-domain
Family:Transcription factor STAT-4 N-domain
96c1f93G_
not modelled 5.3 25 PDB header:transcription
Chain: G: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: crystal structure of a complex between the dimerization2 domain of hnf-1 alpha and the coactivator dcoh
97d1jqra_
not modelled 5.3 20 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
98c3ol4B_
not modelled 5.3 46 PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
99d2huga1
not modelled 5.3 56 Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain

Binding site prediction 

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