Phyre 2 Results for C6Y4B3

Email	l.a.kelley@imperial.ac.uk
Description	C6Y4B3
Date	Sun Jul 8 11:45:06 BST 2012
Unique Job ID	7722aa44661935f5

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template c2rqxA_

Top template information

PDB header:signaling protein
Chain: A: PDB Molecule:polymyxin b resistance protein;
PDBTitle: solution nmr structure of pmrd from klebsiella pneumoniae

Confidence and coverage

Confidence:

30.3%

Coverage:

25%

36 residues ( 25% of your sequence) have been modelled with 30.3% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

Please note: You must be registered and logged in to use Phyrealarm.

3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M R E F R L I F V L L F F L P S F A I A N T E I I N V E T G D S N K L L T S N S V C D I E L S N N S S I P L L L K P N P

Secondary structure

SS confidence

Disorder ? ? ? ?
?
?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence T I P Q A A G A P Q Q S K Y T F S V C G L K P L Q K Y Q I R A S W P A V Y P S D I I L N Y N I T H I I V E I N A S F Y S

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . .

Sequence H N E S L M K R P P L V P L R L G M F Y R V

Secondary structure

SS confidence

Disorder
?
?
?
? ? ? ?
? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 2rqx chain A

Region: 88 - 123
Aligned: 36
Modelled: 36
Confidence: 30.3%
Identity: 31%
PDB header:signaling protein
Chain: A: PDB Molecule:polymyxin b resistance protein;
PDBTitle: solution nmr structure of pmrd from klebsiella pneumoniae

Phyre2

PDB 1jl6 chain A

Region: 80 - 100
Aligned: 21
Modelled: 21
Confidence: 18.5%
Identity: 29%
Fold: Globin-like
Superfamily: Globin-like
Family: Globins

Phyre2

PDB 1q8c chain A

Region: 7 - 18
Aligned: 12
Modelled: 12
Confidence: 15.8%
Identity: 75%
Fold: NusB-like
Superfamily: NusB-like
Family: Hypothetical protein MG027

Phyre2

PDB 3fvc chain A

Region: 70 - 81
Aligned: 12
Modelled: 12
Confidence: 15.2%
Identity: 50%
PDB header:viral protein
Chain: A: PDB Molecule:glycoprotein gp110;
PDBTitle: crystal structure of a trimeric variant of the epstein-barr virus2 glycoprotein b

Phyre2

PDB 1yhu chain X

Region: 80 - 99
Aligned: 20
Modelled: 20
Confidence: 12.5%
Identity: 10%
PDB header:oxygen storage/transport
Chain: X: PDB Molecule:hemoglobin b2 chain;
PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits.

Phyre2

PDB 1vpq chain A

Region: 111 - 120
Aligned: 10
Modelled: 10
Confidence: 11.9%
Identity: 50%
Fold: TIM beta/alpha-barrel
Superfamily: TM1631-like
Family: TM1631-like

Phyre2

PDB 1bqu chain A domain 2

Region: 70 - 90
Aligned: 21
Modelled: 21
Confidence: 11.6%
Identity: 33%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Fibronectin type III
Family: Fibronectin type III

Phyre2

PDB 3coo chain B

Region: 77 - 128
Aligned: 50
Modelled: 52
Confidence: 9.5%
Identity: 22%
PDB header:cell adhesion
Chain: B: PDB Molecule:spondin-1;
PDBTitle: the crystal structure of reelin-n domain of f-spondin

Phyre2

PDB 1wis chain A domain 1

Region: 72 - 92
Aligned: 21
Modelled: 21
Confidence: 9.3%
Identity: 24%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Fibronectin type III
Family: Fibronectin type III

Phyre2

PDB 1hds chain A

Region: 81 - 99
Aligned: 19
Modelled: 19
Confidence: 9.2%
Identity: 26%
Fold: Globin-like
Superfamily: Globin-like
Family: Globins

Phyre2

PDB 1jl7 chain A

Region: 80 - 100
Aligned: 21
Modelled: 21
Confidence: 8.9%
Identity: 24%
Fold: Globin-like
Superfamily: Globin-like
Family: Globins

Phyre2

PDB 2dtg chain E domain 3

Region: 72 - 90
Aligned: 19
Modelled: 19
Confidence: 8.5%
Identity: 32%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Fibronectin type III
Family: Fibronectin type III

Phyre2

PDB 1v5j chain A

Region: 72 - 90
Aligned: 19
Modelled: 19
Confidence: 8.2%
Identity: 26%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Fibronectin type III
Family: Fibronectin type III

Phyre2

PDB 1hbg chain A

Region: 80 - 100
Aligned: 21
Modelled: 21
Confidence: 8.1%
Identity: 33%
Fold: Globin-like
Superfamily: Globin-like
Family: Globins

Phyre2

PDB 3pmb chain A

Region: 79 - 84
Aligned: 6
Modelled: 6
Confidence: 8.0%
Identity: 83%
PDB header:hydrolase
Chain: A: PDB Molecule:thrombin light chain;
PDBTitle: 2.9 angstrom crystal structure of bovine thrombin in tetragonal2 spacegroup

Phyre2

PDB 2jso chain A

Region: 70 - 123
Aligned: 53
Modelled: 54
Confidence: 7.9%
Identity: 26%
PDB header:signaling protein
Chain: A: PDB Molecule:polymyxin resistance protein pmrd;
PDBTitle: antimicrobial resistance protein

Phyre2

PDB 1vpy chain A

Region: 111 - 120
Aligned: 10
Modelled: 10
Confidence: 7.8%
Identity: 30%
Fold: TIM beta/alpha-barrel
Superfamily: TM1631-like
Family: TM1631-like

Phyre2

PDB 1yhu chain J

Region: 83 - 99
Aligned: 17
Modelled: 17
Confidence: 7.8%
Identity: 35%
PDB header:oxygen storage/transport
Chain: J: PDB Molecule:giant hemoglobins b chain;
PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits.

Phyre2

PDB 3pt8 chain B

Region: 80 - 98
Aligned: 19
Modelled: 19
Confidence: 7.7%
Identity: 32%
PDB header:oxygen transport
Chain: B: PDB Molecule:hemoglobin iii;
PDBTitle: structure of hbii-iii-cn from lucina pectinata at ph 5.0

Phyre2

PDB 2lhb chain A

Region: 77 - 99
Aligned: 23
Modelled: 23
Confidence: 7.7%
Identity: 39%
Fold: Globin-like
Superfamily: Globin-like
Family: Globins

Phyre2

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence	M	R	E	F	R	L	I	F	V	L	L	F	F	L	P	S	F	A	I	A	N	T	E	I	I	N	V	E	T	G	D	S	N	K	L	L	T	S	N	S	V	C	D	I	E	L	S	N	N	S	S	I	P	L	L	L	K	P	N	P
Secondary structure
SS confidence
Disorder	?	?	?	?																																																						?		?
Disorder confidence

	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence	T	I	P	Q	A	A	G	A	P	Q	Q	S	K	Y	T	F	S	V	C	G	L	K	P	L	Q	K	Y	Q	I	R	A	S	W	P	A	V	Y	P	S	D	I	I	L	N	Y	N	I	T	H	I	I	V	E	I	N	A	S	F	Y	S
Secondary structure
SS confidence
Disorder	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Sequence	H	N	E	S	L	M	K	R	P	P	L	V	P	L	R	L	G	M	F	Y	R	V
Secondary structure
SS confidence
Disorder			?				?				?					?	?	?	?		?	?
Disorder confidence