Phyre 2 Results for A6X970

Email	l.a.kelley@imperial.ac.uk
Description	A6X970
Date	Sun Jul 8 11:45:01 BST 2012
Unique Job ID	9818a44b6aad2fd1

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template d2oeea1

Top template information

Fold:YheA-like
Superfamily:YheA/YmcA-like
Family:YheA-like

Confidence and coverage

Confidence:

60.0%

Coverage:

16%

23 residues ( 16% of your sequence) have been modelled with 60.0% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

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3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M F C Y F L S K S Y D D C S R Y Y I I S N M A F Y F P V Y D S D S P T T V H H D E R K E S W R S H G F I V C L H I R C C

Secondary structure

SS confidence

Disorder ? ?
? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence I C C K Y N S K I K K P S L N I A L R I Q S L K I I K I L I F Q F Y S T K P L W D K N S P E Y K Q L R S E I E A T K R D

Secondary structure

SS confidence

Disorder
?
? ?
?
? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140

Sequence E E V K N G E L I D P N V T T E D E K L

Secondary structure

SS confidence

Disorder ? ? ? ? ? ?
? ? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 2oee chain A domain 1

Region: 102 - 124
Aligned: 23
Modelled: 23
Confidence: 60.0%
Identity: 26%
Fold: YheA-like
Superfamily: YheA/YmcA-like
Family: YheA-like

Phyre2

PDB 2iaz chain A domain 1

Region: 102 - 124
Aligned: 23
Modelled: 23
Confidence: 39.5%
Identity: 30%
Fold: YheA-like
Superfamily: YheA/YmcA-like
Family: YheA-like

Phyre2

PDB 3uam chain D

Region: 91 - 105
Aligned: 15
Modelled: 15
Confidence: 34.7%
Identity: 33%
PDB header:protein binding
Chain: D: PDB Molecule:chitin binding domain;
PDBTitle: crystal structure of a chitin binding domain from burkholderia2 pseudomallei

Phyre2

PDB 2bem chain A

Region: 91 - 105
Aligned: 15
Modelled: 15
Confidence: 30.3%
Identity: 40%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: E set domains
Family: E-set domains of sugar-utilizing enzymes

Phyre2

PDB 3h43 chain F

Region: 66 - 89
Aligned: 24
Modelled: 24
Confidence: 28.1%
Identity: 25%
PDB header:hydrolase
Chain: F: PDB Molecule:proteasome-activating nucleotidase;
PDBTitle: n-terminal domain of the proteasome-activating nucleotidase2 of methanocaldococcus jannaschii

Phyre2

PDB 2oeq chain A domain 1

Region: 102 - 124
Aligned: 23
Modelled: 23
Confidence: 26.9%
Identity: 30%
Fold: YheA-like
Superfamily: YheA/YmcA-like
Family: YheA-like

Phyre2

PDB 2wg6 chain L

Region: 61 - 89
Aligned: 29
Modelled: 29
Confidence: 26.4%
Identity: 31%
PDB header:transcription,hydrolase
Chain: L: PDB Molecule:general control protein gcn4,
PDBTitle: proteasome-activating nucleotidase (pan) n-domain (57-134)2 from archaeoglobus fulgidus fused to gcn4, p61a mutant

Phyre2

PDB 4a02 chain A

Region: 91 - 105
Aligned: 15
Modelled: 15
Confidence: 26.3%
Identity: 40%
PDB header:chitin binding protein
Chain: A: PDB Molecule:chitin binding protein;
PDBTitle: x-ray crystallographic structure of efcbm33a

Phyre2

PDB 2xwx chain B

Region: 91 - 105
Aligned: 15
Modelled: 15
Confidence: 22.8%
Identity: 47%
PDB header:chitin-binding protein
Chain: B: PDB Molecule:glcnac-binding protein a;
PDBTitle: vibrio cholerae colonization factor gbpa crystal structure

Phyre2

PDB 2pih chain A

Region: 102 - 124
Aligned: 23
Modelled: 23
Confidence: 22.2%
Identity: 9%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ymca;
PDBTitle: crystal structure of protein ymca from bacillus subtilis,2 northeast structural genomics target sr375

Phyre2

PDB 2pih chain A domain 1

Region: 102 - 124
Aligned: 23
Modelled: 23
Confidence: 22.2%
Identity: 9%
Fold: YheA-like
Superfamily: YheA/YmcA-like
Family: YmcA-like

Phyre2

PDB 1xou chain B

Region: 108 - 119
Aligned: 12
Modelled: 12
Confidence: 16.2%
Identity: 67%
Fold: EspA/CesA-like
Superfamily: EspA/CesA-like
Family: EspA chaperone CesA

Phyre2

PDB 2bcg chain G domain 2

Region: 5 - 16
Aligned: 12
Modelled: 12
Confidence: 13.8%
Identity: 50%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: GDI-like N domain

Phyre2

PDB 2in1 chain A domain 1

Region: 97 - 107
Aligned: 11
Modelled: 11
Confidence: 13.5%
Identity: 55%
Fold: UBC-like
Superfamily: UBC-like
Family: UFC1-like

Phyre2

PDB 2lhk chain B

Region: 108 - 119
Aligned: 12
Modelled: 12
Confidence: 13.0%
Identity: 67%
PDB header:chaperone
Chain: B: PDB Molecule:l0052;
PDBTitle: structural analysis of a chaperone in type iii secretion system

Phyre2

PDB 2reu chain A

Region: 7 - 34
Aligned: 28
Modelled: 28
Confidence: 10.3%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:type ii restriction enzyme sau3ai;
PDBTitle: crystal structure of the c-terminal of sau3ai fragment

Phyre2

PDB 3bc1 chain F

Region: 103 - 127
Aligned: 25
Modelled: 25
Confidence: 9.5%
Identity: 28%
PDB header:signaling protein/transport protein
Chain: F: PDB Molecule:synaptotagmin-like protein 2;
PDBTitle: crystal structure of the complex rab27a-slp2a

Phyre2

PDB 3kpa chain B

Region: 97 - 107
Aligned: 11
Modelled: 11
Confidence: 9.3%
Identity: 45%
PDB header:ligase
Chain: B: PDB Molecule:probable ubiquitin fold modifier conjugating enzyme;
PDBTitle: ubiquitin fold modifier conjugating enzyme from leishmania major2 (probable)

Phyre2

PDB 3lo3 chain E

Region: 103 - 112
Aligned: 10
Modelled: 10
Confidence: 9.2%
Identity: 50%
PDB header:structure genomics, unknown function
Chain: E: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved functionally unknown protein from2 colwellia psychrerythraea 34h.

Phyre2

PDB 2e7v chain A

Region: 96 - 117
Aligned: 22
Modelled: 22
Confidence: 9.1%
Identity: 36%
PDB header:hydrolase
Chain: A: PDB Molecule:transmembrane protease;
PDBTitle: crystal structure of sea domain of transmembrane protease2 from mus musculus

Phyre2

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence	M	F	C	Y	F	L	S	K	S	Y	D	D	C	S	R	Y	Y	I	I	S	N	M	A	F	Y	F	P	V	Y	D	S	D	S	P	T	T	V	H	H	D	E	R	K	E	S	W	R	S	H	G	F	I	V	C	L	H	I	R	C	C
Secondary structure
SS confidence
Disorder	?	?																																		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence	I	C	C	K	Y	N	S	K	I	K	K	P	S	L	N	I	A	L	R	I	Q	S	L	K	I	I	K	I	L	I	F	Q	F	Y	S	T	K	P	L	W	D	K	N	S	P	E	Y	K	Q	L	R	S	E	I	E	A	T	K	R	D
Secondary structure
SS confidence
Disorder														?																											?	?		?												?	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	E	V	K	N	G	E	L	I	D	P	N	V	T	T	E	D	E	K	L
Secondary structure
SS confidence
Disorder	?	?	?	?	?	?								?	?	?	?	?	?	?
Disorder confidence