Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ9H305
DateFri May 25 09:56:13 BST 2012
Unique Job IDa13ca89d5b3e45f5

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2joxA_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:churchill protein;
PDBTitle: embryonic neural inducing factor churchill is not a dna-2 binding zinc finger protein: solution structure reveals a3 solvent-exposed beta-sheet and zinc binuclear cluster
Confidence and coverage
Confidence: 62.6% Coverage: 7%
15 residues ( 7% of your sequence) have been modelled with 62.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
Warning: 64% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSSEPPPPYPGGPTAPLLEEKSGAPPTPGRSSPAVMQPPPGMPLPPADIGPPPYEPPGHP
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  MPQPGFIPPHMSADGTYMPPGFYPPPGPHPPMGYYPPGPYTPGPYPGPGGHTATVLVPSG
Secondary structure 
SS confidence 
Disorder  ???????????????????????????
????????????????????????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  AATTVTVLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLI
Secondary structure 
SS confidence 
Disorder  ???
??
??????
Disorder confidence 
 
   .........190.........200........
Sequence  PCLINDFKDVTHTCPSCKAYIYTYKRLC
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2jox chain A

3D model

Region: 191 - 205
Aligned: 15
Modelled: 15
Confidence: 62.6%
Identity: 27%
PDB header:transcription
Chain: A: PDB Molecule:churchill protein;
PDBTitle: embryonic neural inducing factor churchill is not a dna-2 binding zinc finger protein: solution structure reveals a3 solvent-exposed beta-sheet and zinc binuclear cluster

Phyre2

PDB 1hk8 chain A

3D model

Region: 184 - 208
Aligned: 25
Modelled: 25
Confidence: 55.7%
Identity: 32%
Fold: PFL-like glycyl radical enzymes
Superfamily: PFL-like glycyl radical enzymes
Family: Class III anaerobic ribonucleotide reductase NRDD subunit

Phyre2

PDB 1hk8 chain A

3D model

Region: 184 - 208
Aligned: 25
Modelled: 25
Confidence: 55.7%
Identity: 32%
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp

Phyre2

PDB 2kdx chain A

3D model

Region: 133 - 199
Aligned: 31
Modelled: 31
Confidence: 50.4%
Identity: 29%
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein

Phyre2

PDB 2ct1 chain A domain 1

3D model

Region: 190 - 203
Aligned: 14
Modelled: 14
Confidence: 39.8%
Identity: 29%
Fold: beta-beta-alpha zinc fingers
Superfamily: beta-beta-alpha zinc fingers
Family: Classic zinc finger, C2H2

Phyre2

PDB 3na7 chain A

3D model

Region: 189 - 203
Aligned: 15
Modelled: 15
Confidence: 39.0%
Identity: 33%
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874

Phyre2

PDB 3eb6 chain A

3D model

Region: 182 - 207
Aligned: 26
Modelled: 26
Confidence: 38.0%
Identity: 23%
PDB header:apoptosis, ligase
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 3;
PDBTitle: structure of the ciap2 ring domain bound to ubch5b

Phyre2

PDB 2con chain A domain 1

3D model

Region: 132 - 158
Aligned: 27
Modelled: 27
Confidence: 35.8%
Identity: 22%
Fold: Rubredoxin-like
Superfamily: NOB1 zinc finger-like
Family: NOB1 zinc finger-like

Phyre2

PDB 1wii chain A

3D model

Region: 132 - 158
Aligned: 27
Modelled: 27
Confidence: 35.6%
Identity: 19%
Fold: Rubredoxin-like
Superfamily: Zinc beta-ribbon
Family: Putative zinc binding domain

Phyre2

PDB 2opf chain A

3D model

Region: 142 - 199
Aligned: 26
Modelled: 26
Confidence: 35.4%
Identity: 23%
PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate

Phyre2

PDB 1k82 chain D

3D model

Region: 142 - 199
Aligned: 26
Modelled: 26
Confidence: 34.5%
Identity: 23%
PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna

Phyre2

PDB 1v87 chain A

3D model

Region: 178 - 203
Aligned: 26
Modelled: 26
Confidence: 34.4%
Identity: 38%
Fold: RING/U-box
Superfamily: RING/U-box
Family: RING finger domain, C3HC4

Phyre2

PDB 1vdd chain A

3D model

Region: 184 - 208
Aligned: 23
Modelled: 25
Confidence: 34.0%
Identity: 35%
Fold: Recombination protein RecR
Superfamily: Recombination protein RecR
Family: Recombination protein RecR

Phyre2

PDB 1vdd chain C

3D model

Region: 184 - 208
Aligned: 23
Modelled: 25
Confidence: 32.3%
Identity: 35%
PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr

Phyre2

PDB 1x6m chain A

3D model

Region: 191 - 202
Aligned: 12
Modelled: 12
Confidence: 30.7%
Identity: 33%
Fold: Mss4-like
Superfamily: Mss4-like
Family: Glutathione-dependent formaldehyde-activating enzyme, Gfa

Phyre2

PDB 2ecl chain A

3D model

Region: 183 - 207
Aligned: 24
Modelled: 25
Confidence: 29.5%
Identity: 17%
PDB header:metal binding protein
Chain: A: PDB Molecule:ring-box protein 2;
PDBTitle: solution structure of the ring domain of the human ring-box2 protein 2

Phyre2

PDB 2yho chain E

3D model

Region: 182 - 207
Aligned: 26
Modelled: 26
Confidence: 29.3%
Identity: 12%
PDB header:ligase
Chain: E: PDB Molecule:e3 ubiquitin-protein ligase mylip;
PDBTitle: the idol-ube2d complex mediates sterol-dependent degradation of the2 ldl receptor

Phyre2

PDB 1zza chain A

3D model

Region: 163 - 175
Aligned: 13
Modelled: 13
Confidence: 28.6%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin

Phyre2

PDB 3fac chain E

3D model

Region: 191 - 206
Aligned: 16
Modelled: 16
Confidence: 28.6%
Identity: 25%
PDB header:unknown function
Chain: E: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of rhodobacter sphaeroides protein2 rsp_2168. northeast structural genomics target rhr83.

Phyre2

PDB 1qf8 chain A

3D model

Region: 132 - 148
Aligned: 17
Modelled: 14
Confidence: 28.3%
Identity: 35%
Fold: Rubredoxin-like
Superfamily: Casein kinase II beta subunit
Family: Casein kinase II beta subunit

Phyre2
1
c2joxA_
2
d1hk8a_
3
c1hk8A_
4
c2kdxA_
5
d2ct1a1
6
c3na7A_
7
c3eb6A_
8
d2cona1
9
d1wiia_
10
c2opfA_
11
c1k82D_
12
d1v87a_
13
d1vdda_
14
c1vddC_
15
d1x6ma_
16
c2eclA_
17
c2yhoE_
18
c1zzaA_
19
c3facE_
20
d1qf8a_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2joxA_
62.6 27 PDB header:transcription
Chain: A: PDB Molecule:churchill protein;
PDBTitle: embryonic neural inducing factor churchill is not a dna-2 binding zinc finger protein: solution structure reveals a3 solvent-exposed beta-sheet and zinc binuclear cluster
2d1hk8a_
55.7 32 Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
3c1hk8A_
55.7 32 PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp
4c2kdxA_
50.4 29 PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
5d2ct1a1
39.8 29 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
6c3na7A_
39.0 33 PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
7c3eb6A_
38.0 23 PDB header:apoptosis, ligase
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 3;
PDBTitle: structure of the ciap2 ring domain bound to ubch5b
8d2cona1
35.8 22 Fold:Rubredoxin-like
Superfamily:NOB1 zinc finger-like
Family:NOB1 zinc finger-like
9d1wiia_
35.6 19 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Putative zinc binding domain
10c2opfA_
35.4 23 PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
11c1k82D_
34.5 23 PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
12d1v87a_
34.4 38 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
13d1vdda_
34.0 35 Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR
14c1vddC_
32.3 35 PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr
15d1x6ma_
30.7 33 Fold:Mss4-like
Superfamily:Mss4-like
Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa
16c2eclA_
29.5 17 PDB header:metal binding protein
Chain: A: PDB Molecule:ring-box protein 2;
PDBTitle: solution structure of the ring domain of the human ring-box2 protein 2
17c2yhoE_
29.3 12 PDB header:ligase
Chain: E: PDB Molecule:e3 ubiquitin-protein ligase mylip;
PDBTitle: the idol-ube2d complex mediates sterol-dependent degradation of the2 ldl receptor
18c1zzaA_
28.6 15 PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
19c3facE_
28.6 25 PDB header:unknown function
Chain: E: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of rhodobacter sphaeroides protein2 rsp_2168. northeast structural genomics target rhr83.
20d1qf8a_
28.3 35 Fold:Rubredoxin-like
Superfamily:Casein kinase II beta subunit
Family:Casein kinase II beta subunit
21c2d8tA_
not modelled 28.3 16 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger protein 146;
PDBTitle: solution structure of the ring domain of the human ring2 finger protein 146
22c3cc4Z_
not modelled 28.3 26 PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
23d1iyma_
not modelled 28.2 21 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
24c2djbA_
not modelled 27.7 19 PDB header:gene regulation
Chain: A: PDB Molecule:polycomb group ring finger protein 6;
PDBTitle: solution structure of the ring domain of the human polycomb2 group ring finger protein 6
25d1x63a2
not modelled 27.2 50 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
26d1lv3a_
not modelled 26.9 19 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Hypothetical zinc finger protein YacG
27c2lo2A_
not modelled 25.7 17 PDB header:transcription
Chain: A: PDB Molecule:saga-associated factor 11;
PDBTitle: solution structure of sgf11(63-99) zinc finger domain
28c2ea5A_
not modelled 25.4 23 PDB header:cell cycle
Chain: A: PDB Molecule:cell growth regulator with ring finger domain
PDBTitle: solution structure of the ring domain of the human cell2 growth regulator with ring finger domain 1 protein
29c2qa4Z_
not modelled 25.3 26 PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit
30c2kluA_
not modelled 24.7 13 PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
31d1jwhc_
not modelled 24.5 35 Fold:Rubredoxin-like
Superfamily:Casein kinase II beta subunit
Family:Casein kinase II beta subunit
32c2jvyA_
not modelled 24.4 27 PDB header:metal binding protein
Chain: A: PDB Molecule:nf-kappa-b essential modulator;
PDBTitle: solution structure of the eda-id-related c417f mutant of2 human nemo zinc finger
33d1ffkw_
not modelled 24.1 22 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
34d1rb9a_
not modelled 21.8 38 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
35c2jmdA_
not modelled 21.8 30 PDB header:ligase
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: solution structure of the ring domain of human traf6
36d2dsxa1
not modelled 21.3 33 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
37c2ecmA_
not modelled 21.1 16 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger and chy zinc finger domain-
PDBTitle: solution structure of the ring domain of the ring finger2 and chy zinc finger domain-containing protein 1 from mus3 musculus
38d2fu5a1
not modelled 20.4 11 Fold:Mss4-like
Superfamily:Mss4-like
Family:RabGEF Mss4
39c1bi6H_
not modelled 20.3 27 PDB header:cysteine protease inhibitor
Chain: H: PDB Molecule:bromelain inhibitor vi;
PDBTitle: nmr structure of bromelain inhibitor vi from pineapple stem
40c2kn9A_
not modelled 20.1 24 PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin;
PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a
41c2l0bA_
not modelled 20.0 21 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase praja-1;
PDBTitle: solution nmr structure of zinc finger domain of e3 ubiquitin-protein2 ligase praja-1 from homo sapiens, northeast structural genomics3 consortium (nesg) target hr4710b
42c1s24A_
not modelled 20.0 33 PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin 2;
PDBTitle: rubredoxin domain ii from pseudomonas oleovorans
43d1s24a_
not modelled 20.0 33 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
44c2ep4A_
not modelled 19.9 21 PDB header:protein binding
Chain: A: PDB Molecule:ring finger protein 24;
PDBTitle: solution structure of ring finger from human ring finger2 protein 24
45c3fl2A_
not modelled 19.8 24 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of the ring domain of the e3 ubiquitin-2 protein ligase uhrf1
46c4a17Y_
not modelled 19.6 18 PDB header:ribosome
Chain: Y: PDB Molecule:rpl37a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
47d1wgma_
not modelled 19.5 10 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
48d2rdva_
not modelled 19.4 43 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
49c1z6uA_
not modelled 19.1 35 PDB header:ligase
Chain: A: PDB Molecule:np95-like ring finger protein isoform b;
PDBTitle: np95-like ring finger protein isoform b [homo sapiens]
50d1fbva4
not modelled 19.0 23 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
51d1dx8a_
not modelled 18.8 24 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
52d1h7va_
not modelled 18.7 24 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
53c2v3bB_
not modelled 18.7 33 PDB header:oxidoreductase
Chain: B: PDB Molecule:rubredoxin 2;
PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa.
54d4rxna_
not modelled 18.6 38 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
55d1hxra_
not modelled 18.4 11 Fold:Mss4-like
Superfamily:Mss4-like
Family:RabGEF Mss4
56d1qcva_
not modelled 18.2 29 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
57c2zkrz_
not modelled 18.0 25 PDB header:ribosomal protein/rna
Chain: Z: PDB Molecule:e site t-rna;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
58c1yshD_
not modelled 18.0 13 PDB header:structural protein/rna
Chain: D: PDB Molecule:ribosomal protein l37a;
PDBTitle: localization and dynamic behavior of ribosomal protein l30e
59d1jj2y_
not modelled 18.0 25 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
60d1iu5a_
not modelled 17.8 43 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
61c2ecgA_
not modelled 17.7 15 PDB header:apoptosis
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4;
PDBTitle: solution structure of the ring domain of the baculoviral2 iap repeat-containing protein 4 from homo sapiens
62d1iroa_
not modelled 17.7 38 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
63d1vqoz1
not modelled 17.6 31 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
64c3jyw9_
not modelled 17.4 13 PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
65d6rxna_
not modelled 17.3 28 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
66c3l11A_
not modelled 17.2 20 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf168;
PDBTitle: crystal structure of the ring domain of rnf168
67c2ecyA_
not modelled 17.2 20 PDB header:apoptosis
Chain: A: PDB Molecule:tnf receptor-associated factor 3;
PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger)" domain of tnf receptor-associated factor 3
68d1brfa_
not modelled 17.1 38 Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
69c1x4jA_
not modelled 17.0 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ring finger protein 38;
PDBTitle: solution structure of ring finger in ring finger protein 38
70c2vjfB_
not modelled 16.9 24 PDB header:ligase
Chain: B: PDB Molecule:mdm4 protein;
PDBTitle: crystal structure of the mdm2-mdmx ring domain heterodimer
71c2zxeG_
not modelled 16.8 13 PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
72c1s1i9_
not modelled 16.5 13 PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
73c3vk6A_
not modelled 16.0 23 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hakai;
PDBTitle: crystal structure of a phosphotyrosine binding domain
74c2h0dB_
not modelled 15.9 21 PDB header:metal binding protein/ligase
Chain: B: PDB Molecule:ubiquitin ligase protein ring2;
PDBTitle: structure of a bmi-1-ring1b polycomb group ubiquitin ligase complex
75c3s8pA_
not modelled 15.8 32 PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv420h1;
PDBTitle: crystal structure of the set domain of human histone-lysine n-2 methyltransferase suv420h1 in complex with s-adenosyl-l-methionine
76c2ysoA_
not modelled 15.4 24 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 95 homolog;
PDBTitle: solution structure of the c2h2 type zinc finger (region 656-2 688) of human zinc finger protein 95 homolog
77c2xeuA_
not modelled 15.1 32 PDB header:transcription
Chain: A: PDB Molecule:ring finger protein 4;
PDBTitle: ring domain
78d1g25a_
not modelled 14.6 25 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
79c2hdpB_
not modelled 14.4 19 PDB header:ligase
Chain: B: PDB Molecule:ubiquitin-protein ligase e3 mdm2;
PDBTitle: solution structure of hdm2 ring finger domain
80d1vzya2
not modelled 14.4 27 Fold:HSP33 redox switch-like
Superfamily:HSP33 redox switch-like
Family:HSP33 redox switch-like
81c2kizA_
not modelled 14.3 21 PDB header:metal binding protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arkadia;
PDBTitle: solution structure of arkadia ring-h2 finger domain
82c2ectA_
not modelled 14.3 21 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger protein 126;
PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of ring finger protein 126
83c2jo1A_
not modelled 14.3 13 PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
84d2k4xa1
not modelled 14.1 30 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
85c1x31D_
not modelled 13.8 24 PDB header:oxidoreductase
Chain: D: PDB Molecule:sarcosine oxidase delta subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
86c2zkr4_
not modelled 13.4 24 PDB header:ribosomal protein/rna
Chain: 4: PDB Molecule:60s ribosomal protein l44e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
87c2lcqA_
not modelled 13.3 25 PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
88d1xjha_
not modelled 13.1 14 Fold:HSP33 redox switch-like
Superfamily:HSP33 redox switch-like
Family:HSP33 redox switch-like
89c2jp3A_
not modelled 12.9 25 PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
90d1vq0a2
not modelled 12.9 19 Fold:HSP33 redox switch-like
Superfamily:HSP33 redox switch-like
Family:HSP33 redox switch-like
91d2qam01
not modelled 12.8 6 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
92d1vqo31
not modelled 12.7 29 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L44e
93d2j0151
not modelled 12.2 29 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
94d2cu8a1
not modelled 12.1 33 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
95c2cklA_
not modelled 12.1 20 PDB header:transcription
Chain: A: PDB Molecule:polycomb group ring finger protein 4;
PDBTitle: ring1b-bmi1 e3 catalytic domain structure
96d2dloa1
not modelled 12.1 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
97d1e4ua_
not modelled 12.1 25 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
98d1ee8a3
not modelled 11.9 56 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
99c3d5d6_
not modelled 11.8 27 PDB header:ribosome
Chain: 6: PDB Molecule:50s ribosomal protein l33;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of the second 70s ribosome. the entire3 crystal structure contains two 70s ribosomes as described in remark4 400.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite