Secondary structure and disorder prediction

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Sequence		M	S	N	T	T	W	G	L	Q	R	D	I	T	P	R	L	G	A	R	L	V	Q	E	G	N	Q	L	H	Y	L	A	D	R	A	S	I	T	G	K	F	S	D	A	E	C	P	K	L	D	V	V	F	P	H	F	I	S	Q	I	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Sequence		S	M	L	T	T	G	E	L	N	P	R	H	A	Q	C	V	T	L	Y	H	N	G	F	T	C	E	A	D	T	L	G	S	C	G	Y	V	Y	I	A	V	Y	P	T	Q	R
Secondary structure
SS confidence
Disorder			?	?	?		?	?																																			?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ea9 chain A domain 1 Region: 1 - 103 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 100% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 2h28 chain A domain 1 Region: 4 - 103 Aligned: 100 Modelled: 100 Confidence: 100.0% Identity: 64% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 2inw chain A domain 1 Region: 4 - 104 Aligned: 101 Modelled: 101 Confidence: 100.0% Identity: 65% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 1ryb chain A Region: 38 - 67 Aligned: 30 Modelled: 30 Confidence: 58.8% Identity: 23% Fold: Phosphorylase/hydrolase-like Superfamily: Peptidyl-tRNA hydrolase-like Family: Peptidyl-tRNA hydrolase-like Phyre2 PDB 3h3y chain F Region: 84 - 102 Aligned: 18 Modelled: 19 Confidence: 48.6% Identity: 33% PDB header:viral protein Chain: F: PDB Molecule:baseplate structural protein gp6; PDBTitle: fitting of the gp6 crystal structure into 3d cryo-em2 reconstruction of bacteriophage t4 star-shaped baseplate Phyre2 PDB 2z2j chain A Region: 38 - 66 Aligned: 29 Modelled: 29 Confidence: 48.6% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis Phyre2 PDB 3v2i chain A Region: 38 - 66 Aligned: 29 Modelled: 29 Confidence: 31.7% Identity: 7% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis Phyre2 PDB 3nea chain A Region: 38 - 66 Aligned: 29 Modelled: 29 Confidence: 31.5% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis Phyre2 PDB 2pth chain A Region: 38 - 66 Aligned: 29 Modelled: 29 Confidence: 30.0% Identity: 24% Fold: Phosphorylase/hydrolase-like Superfamily: Peptidyl-tRNA hydrolase-like Family: Peptidyl-tRNA hydrolase-like Phyre2 PDB 2qdy chain A domain 1 Region: 8 - 93 Aligned: 68 Modelled: 71 Confidence: 21.0% Identity: 22% Fold: Nitrile hydratase alpha chain Superfamily: Nitrile hydratase alpha chain Family: Nitrile hydratase alpha chain Phyre2 PDB 2yqk chain A Region: 31 - 52 Aligned: 22 Modelled: 22 Confidence: 17.9% Identity: 9% PDB header:transcription/apoptosis Chain: A: PDB Molecule:arginine-glutamic acid dipeptide repeats protein; PDBTitle: solution structure of the sant domain in arginine-glutamic2 acid dipeptide (re) repeats Phyre2 PDB 1lpb chain A domain 2 Region: 82 - 88 Aligned: 7 Modelled: 7 Confidence: 15.5% Identity: 71% Fold: Knottins (small inhibitors, toxins, lectins) Superfamily: Colipase-like Family: Colipase-like Phyre2 PDB 1du0 chain A Region: 39 - 52 Aligned: 14 Modelled: 14 Confidence: 15.5% Identity: 29% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 3aqo chain D Region: 33 - 68 Aligned: 25 Modelled: 36 Confidence: 15.2% Identity: 40% PDB header:membrane protein Chain: D: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: structure and function of a membrane component secdf that enhances2 protein export Phyre2 PDB 1xv2 chain A Region: 13 - 38 Aligned: 26 Modelled: 26 Confidence: 15.2% Identity: 27% Fold: AF0104/ALDC/Ptd012-like Superfamily: AF0104/ALDC/Ptd012-like Family: Alpha-acetolactate decarboxylase-like Phyre2 PDB 2e7g chain A domain 1 Region: 43 - 103 Aligned: 57 Modelled: 61 Confidence: 12.9% Identity: 14% Fold: Alpha-lytic protease prodomain-like Superfamily: Ribosome-binding factor A, RbfA Family: Ribosome-binding factor A, RbfA Phyre2 PDB 1s7e chain A domain 1 Region: 37 - 52 Aligned: 16 Modelled: 16 Confidence: 11.9% Identity: 25% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 1mh3 chain A domain 1 Region: 35 - 52 Aligned: 18 Modelled: 18 Confidence: 11.8% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 2d81 chain A domain 1 Region: 66 - 98 Aligned: 32 Modelled: 33 Confidence: 11.8% Identity: 28% Fold: alpha/beta-Hydrolases Superfamily: alpha/beta-Hydrolases Family: PHB depolymerase-like Phyre2 PDB 1le8 chain A Region: 37 - 52 Aligned: 16 Modelled: 16 Confidence: 10.9% Identity: 25% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 1 d2ea9a1 2 d2h28a1 3 d2inwa1 4 d1ryba_ 5 c3h3yF_ 6 c2z2jA_ 7 c3v2iA_ 8 c3neaA_ 9 d2ptha_ 10 d2qdya1 11 c2yqkA_ 12 d1lpba2 13 d1du0a_ 14 c3aqoD_ 15 d1xv2a_ 16 d2e7ga1 17 d1s7ea1 18 d1mh3a1 19 d2d81a1 20 d1le8a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ea9a1 100.0 100 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 2 d2h28a1 100.0 64 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 3 d2inwa1 100.0 65 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 4 d1ryba_ 58.8 23 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 5 c3h3yF_ 48.6 33 PDB header:viral protein Chain: F: PDB Molecule:baseplate structural protein gp6; PDBTitle: fitting of the gp6 crystal structure into 3d cryo-em2 reconstruction of bacteriophage t4 star-shaped baseplate 6 c2z2jA_ 48.6 17 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis 7 c3v2iA_ 31.7 7 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis 8 c3neaA_ 31.5 14 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis 9 d2ptha_ 30.0 24 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 10 d2qdya1 21.0 22 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 11 c2yqkA_ 17.9 9 PDB header:transcription/apoptosis Chain: A: PDB Molecule:arginine-glutamic acid dipeptide repeats protein; PDBTitle: solution structure of the sant domain in arginine-glutamic2 acid dipeptide (re) repeats 12 d1lpba2 15.5 71 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Colipase-like Family:Colipase-like 13 d1du0a_ 15.5 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 14 c3aqoD_ 15.2 40 PDB header:membrane protein Chain: D: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: structure and function of a membrane component secdf that enhances2 protein export 15 d1xv2a_ 15.2 27 Fold:AF0104/ALDC/Ptd012-like Superfamily:AF0104/ALDC/Ptd012-like Family:Alpha-acetolactate decarboxylase-like 16 d2e7ga1 12.9 14 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 17 d1s7ea1 11.9 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 18 d1mh3a1 11.8 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 19 d2d81a1 11.8 28 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:PHB depolymerase-like 20 d1le8a_ 10.9 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 21 d1p7jb_ not modelled 10.8 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 22 c1a31A_ not modelled 9.9 24 PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex 23 d1e3oc1 not modelled 9.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 24 c1n8sC_ not modelled 9.5 43 PDB header:hydrolase Chain: C: PDB Molecule:colipase ii; PDBTitle: structure of the pancreatic lipase-colipase complex 25 d1au7a1 not modelled 9.3 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 26 c3a03A_ not modelled 8.5 31 PDB header:gene regulation Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2; PDBTitle: crystal structure of hox11l1 homeodomain 27 c3hruA_ not modelled 8.4 17 PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ 28 d1qcva_ not modelled 8.3 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 29 d6rxna_ not modelled 8.3 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 30 c2jobA_ not modelled 8.2 12 PDB header:lipid binding protein Chain: A: PDB Molecule:antilipopolysaccharide factor; PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site 31 d1ijwc_ not modelled 8.2 37 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 32 d1g3wa2 not modelled 8.1 14 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 33 d2dsxa1 not modelled 8.0 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 34 d2rdva_ not modelled 7.6 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 35 d1f43a_ not modelled 7.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 36 d1h7va_ not modelled 7.5 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 37 d2hrkb1 not modelled 7.5 19 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Arc1p N-terminal domain-like 38 d1brfa_ not modelled 7.4 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 39 d1yz8p1 not modelled 7.3 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 40 d1rb9a_ not modelled 7.2 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 41 d1iu5a_ not modelled 7.2 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 42 d1p7ia_ not modelled 7.2 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 43 d1lfba_ not modelled 7.1 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 44 d1sana_ not modelled 7.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 45 d1s24a_ not modelled 7.1 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 46 c1s24A_ not modelled 7.1 50 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin 2; PDBTitle: rubredoxin domain ii from pseudomonas oleovorans 47 d1iroa_ not modelled 7.0 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 48 d1zl8a1 not modelled 7.0 25 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 49 d1x93a1 not modelled 7.0 50 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 50 c1x93B_ not modelled 7.0 50 PDB header:transcription Chain: B: PDB Molecule:hypothetical protein hp0222; PDBTitle: nmr structure of helicobacter pylori hp0222 51 c2lcgA_ not modelled 6.9 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein rmet_5065 from ralstonia2 metallidurans, northeast structural genomics consortium target crr115 52 c3fhkF_ not modelled 6.8 22 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:upf0403 protein yphp; PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide2 isomerase 53 d1ocpa_ not modelled 6.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 54 c2v3bB_ not modelled 6.7 50 PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa. 55 d4rxna_ not modelled 6.7 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 56 d1dx8a_ not modelled 6.7 67 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 57 d1ftza_ not modelled 6.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 58 d1bcoa1 not modelled 6.6 35 Fold:mu transposase, C-terminal domain Superfamily:mu transposase, C-terminal domain Family:mu transposase, C-terminal domain 59 d9anta_ not modelled 6.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 60 d1jgga_ not modelled 6.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 61 d2hddb_ not modelled 6.4 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 62 c2da1A_ not modelled 6.4 19 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1) 63 d2craa1 not modelled 6.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 64 d1qasa3 not modelled 6.3 83 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Mammalian PLC 65 c2dmqA_ not modelled 6.3 13 PDB header:dna binding protein Chain: A: PDB Molecule:lim/homeobox protein lhx9; PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9 66 c2dmuA_ not modelled 6.0 25 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein goosecoid; PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid 67 d1fjla_ not modelled 6.0 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 68 d1wh5a_ not modelled 6.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 69 d1gvda_ not modelled 5.8 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 70 d1y74a1 not modelled 5.8 25 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 71 d1hcra_ not modelled 5.7 37 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 72 c2da4A_ not modelled 5.6 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 73 c2kn9A_ not modelled 5.6 50 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a 74 c2l9rA_ not modelled 5.5 19 PDB header:transcription Chain: A: PDB Molecule:homeobox protein nkx-3.1; PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a 75 d1q8la_ not modelled 5.4 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 76 d2o5ha1 not modelled 5.4 21 Fold:NMB0513-like Superfamily:NMB0513-like Family:NMB0513-like 77 c2hfpB_ not modelled 5.4 83 PDB header:transcription Chain: B: PDB Molecule:src peptide fragment; PDBTitle: crystal structure of ppar gamma with n-sulfonyl-2-indole2 carboxamide ligands 78 d2obba1 not modelled 5.4 24 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 79 d1eexa_ not modelled 5.3 60 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Diol dehydratase, alpha subunit 80 c1fm9E_ not modelled 5.3 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and gi262570 and co-activator peptides. 81 c1k74E_ not modelled 5.3 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.3 angstrom resolution crystal structure of the2 heterodimer of the human ppargamma and rxralpha ligand3 binding domains respectively bound with gw409544 and 9-cis4 retinoic acid and co-activator peptides. 82 c1fm6E_ not modelled 5.3 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides. 83 c2djnA_ not modelled 5.3 19 PDB header:transcription Chain: A: PDB Molecule:homeobox protein dlx-5; PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5 84 c3kmgE_ not modelled 5.3 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator-1; PDBTitle: the x-ray crystal structure of ppar-gamma in complex with an indole2 derivative modulator, gsk538, and an src-1 peptide 85 c1fm6V_ not modelled 5.3 83 PDB header:transcription Chain: V: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides. 86 c1p8dC_ not modelled 5.3 71 PDB header:membrane protein/protein binding Chain: C: PDB Molecule:nuclear receptor coactivator 1 isoform 3; PDBTitle: x-ray crystal structure of lxr ligand binding domain with 24(s),25-2 epoxycholesterol 87 d1b8ia_ not modelled 5.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 88 c1p8dD_ not modelled 5.3 83 PDB header:membrane protein/protein binding Chain: D: PDB Molecule:nuclear receptor coactivator 1 isoform 3; PDBTitle: x-ray crystal structure of lxr ligand binding domain with 24(s),25-2 epoxycholesterol 89 c1k7lB_ not modelled 5.3 71 PDB header:transcription Chain: B: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide. 90 c1k7lD_ not modelled 5.3 71 PDB header:transcription Chain: D: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide. 91 c1k7lF_ not modelled 5.3 71 PDB header:transcription Chain: F: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide. 92 c1k7lH_ not modelled 5.3 71 PDB header:transcription Chain: H: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide. 93 c2ypnA_ not modelled 5.2 19 PDB header:transferase Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase); PDBTitle: hydroxymethylbilane synthase 94 c2dmsA_ not modelled 5.1 25 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein otx2; PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0