Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	Y	F	R	I	N	P	V	L	A	L	L	L	L	L	T	A	I	A	A	A	L	P	F	I	S	Y	A	P	N	R	L	V	S	G	E	G	R	H	L	W	Q	L	W	P	Q	T	I	W	M	L	V	G	V	G	C	A	W	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																										?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	A	C	F	I	P	G	K	K	G	S	I	C	A	L	I	L	A	Q	F	V	F	V	L	L	V	W	G	A	G	K	A	A	T	Q	L	A	Q	N	G	S	A	L	A	R	T	S	L	G	S	G	F	W	L	A	A	A	L	A	L
Secondary structure
SS confidence
Disorder				?						?																									?	?	?	?	?	?	?	?	?	?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	A	C	S	D	A	I	R	R	I	S	T	H	P	L	W	R	W	L	L	H	M	Q	I	A	I	I	P	L	W	L	L	Y	S	G	T	L	N	D	L	S	L	M	K	E	Y	A	N	R	Q	D	V	F	D	D	A	L	A	Q	H
Secondary structure
SS confidence
Disorder						?																						?	?																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	T	L	L	F	G	A	V	L	P	A	L	V	I	G	V	P	L	G	I	W	C	Y	F	S	T	A	R	Q	G	A	I	F	S	L	L	N	V	I	Q	T	V	P	S	V	A	L	F	G	L	L	I	A	P	L	A	A	L	V	T
Secondary structure
SS confidence
Disorder																																																								?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	F	P	W	L	G	T	L	G	I	A	G	T	G	M	T	P	A	L	I	A	L	V	L	Y	A	L	L	P	L	V	R	G	V	V	V	G	L	N	Q	I	P	R	D	V	L	E	S	A	R	A	M	G	M	S	G	A	Q	R	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	H	V	Q	L	P	L	A	L	P	V	F	L	R	S	L	R	V	V	M	V	Q	T	V	G	M	A	V	I	A	A	L	I	G	A	G	G	F	G	A	L	V	F	Q	G	L	L	S	S	A	I	D	L	V	L	L	G	V	I	P
Secondary structure
SS confidence
Disorder																																																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Sequence		V	I	V	L	A	V	L	T	D	A	L	F	D	L	L	I	A	L	L	K	V	K	R	N	D
Secondary structure
SS confidence
Disorder																						?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3d31 chain C domain 1 Region: 138 - 373 Aligned: 235 Modelled: 236 Confidence: 99.9% Identity: 15% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3d31 chain D Region: 138 - 373 Aligned: 235 Modelled: 236 Confidence: 99.9% Identity: 15% PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans Phyre2 PDB 2onk chain C Region: 138 - 375 Aligned: 236 Modelled: 238 Confidence: 99.9% Identity: 13% PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda Phyre2 PDB 2onk chain C domain 1 Region: 138 - 375 Aligned: 236 Modelled: 238 Confidence: 99.9% Identity: 13% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3dhw chain A domain 1 Region: 173 - 373 Aligned: 191 Modelled: 201 Confidence: 99.8% Identity: 25% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 2r6g chain F Region: 157 - 371 Aligned: 215 Modelled: 215 Confidence: 99.8% Identity: 15% PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter Phyre2 PDB 2r6g chain F domain 2 Region: 157 - 372 Aligned: 216 Modelled: 216 Confidence: 99.8% Identity: 16% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3fh6 chain F Region: 171 - 385 Aligned: 215 Modelled: 215 Confidence: 99.8% Identity: 15% PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Phyre2 PDB 2r6g chain G domain 1 Region: 173 - 373 Aligned: 195 Modelled: 195 Confidence: 99.6% Identity: 14% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 1ntc chain A Region: 272 - 303 Aligned: 32 Modelled: 32 Confidence: 42.9% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1umq chain A Region: 272 - 303 Aligned: 32 Modelled: 32 Confidence: 35.4% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1umq chain A Region: 272 - 303 Aligned: 32 Modelled: 32 Confidence: 35.4% Identity: 19% PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity Phyre2 PDB 3e7l chain D Region: 272 - 303 Aligned: 32 Modelled: 32 Confidence: 24.1% Identity: 13% PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain Phyre2 PDB 1fip chain A Region: 272 - 303 Aligned: 32 Modelled: 32 Confidence: 23.9% Identity: 9% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1eto chain B Region: 272 - 303 Aligned: 32 Modelled: 32 Confidence: 23.4% Identity: 9% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1etx chain A Region: 272 - 303 Aligned: 32 Modelled: 32 Confidence: 19.7% Identity: 9% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1g2h chain A Region: 272 - 303 Aligned: 31 Modelled: 32 Confidence: 15.4% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 2jwa chain A Region: 178 - 205 Aligned: 28 Modelled: 28 Confidence: 15.1% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure Phyre2 PDB 1jb0 chain J Region: 1 - 33 Aligned: 33 Modelled: 33 Confidence: 12.6% Identity: 27% Fold: Single transmembrane helix Superfamily: Subunit IX of photosystem I reaction centre, PsaJ Family: Subunit IX of photosystem I reaction centre, PsaJ Phyre2 PDB 2cw1 chain A Region: 282 - 299 Aligned: 18 Modelled: 18 Confidence: 11.4% Identity: 28% PDB header:de novo protein Chain: A: PDB Molecule:sn4m; PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein Phyre2 1 d3d31c1 2 c3d31D_ 3 c2onkC_ 4 d2onkc1 5 d3dhwa1 6 c2r6gF_ 7 d2r6gf2 8 c3fh6F_ 9 d2r6gg1 10 d1ntca_ 11 d1umqa_ 12 c1umqA_ 13 c3e7lD_ 14 d1fipa_ 15 d1etob_ 16 d1etxa_ 17 d1g2ha_ 18 c2jwaA_ 19 d1jb0j_ 20 c2cw1A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d3d31c1 99.9 15 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 2 c3d31D_ 99.9 15 PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans 3 c2onkC_ 99.9 13 PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda 4 d2onkc1 99.9 13 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 5 d3dhwa1 99.8 25 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 6 c2r6gF_ 99.8 15 PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter 7 d2r6gf2 99.8 16 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 8 c3fh6F_ 99.8 15 PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli 9 d2r6gg1 99.6 14 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 10 d1ntca_ 42.9 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 11 d1umqa_ 35.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 12 c1umqA_ 35.4 19 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 13 c3e7lD_ 24.1 13 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain 14 d1fipa_ 23.9 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 15 d1etob_ 23.4 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 16 d1etxa_ 19.7 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 17 d1g2ha_ 15.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 18 c2jwaA_ 15.1 21 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 19 d1jb0j_ 12.6 27 Fold:Single transmembrane helix Superfamily:Subunit IX of photosystem I reaction centre, PsaJ Family:Subunit IX of photosystem I reaction centre, PsaJ 20 c2cw1A_ 11.4 28 PDB header:de novo protein Chain: A: PDB Molecule:sn4m; PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein 21 c2k21A_ not modelled 11.2 12 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 22 d2auwa1 not modelled 10.7 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE0471 C-terminal domain-like 23 c1ciiA_ not modelled 10.2 25 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 24 d2ns0a1 not modelled 9.6 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RHA1 ro06458-like 25 c3hzqA_ not modelled 9.1 20 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: structure of a tetrameric mscl in an expanded intermediate2 state 26 d1i3ja_ not modelled 9.0 19 Fold:DNA-binding domain of intron-encoded endonucleases Superfamily:DNA-binding domain of intron-encoded endonucleases Family:DNA-binding domain of intron-encoded endonucleases 27 d1t1ra3 not modelled 8.8 50 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 28 d1rutx4 not modelled 8.8 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 29 c2ka2B_ not modelled 8.8 21 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 30 c2ka2A_ not modelled 8.8 21 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 31 c2ka1B_ not modelled 8.8 21 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles 32 c2ka1A_ not modelled 8.8 21 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles 33 c2auwB_ not modelled 8.4 16 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ne0471; PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718 34 d2phcb1 not modelled 8.3 16 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 35 c3mmlD_ not modelled 8.0 26 PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 36 d1cf7a_ not modelled 7.8 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Cell cycle transcription factor e2f-dp 37 c2kr6A_ not modelled 7.8 21 PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit 38 c2d7dB_ not modelled 7.8 23 PDB header:hydrolase/dna Chain: B: PDB Molecule:40-mer from uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb 39 d1kqfb2 not modelled 7.8 22 Fold:Single transmembrane helix Superfamily:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor Family:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor 40 c1vf5E_ not modelled 7.7 21 PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 41 c2e75E_ not modelled 7.7 21 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 42 c1vf5R_ not modelled 7.7 21 PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 43 c2e74E_ not modelled 7.7 21 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 44 d2e74e1 not modelled 7.7 21 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 45 c2e76E_ not modelled 7.7 21 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 46 c2voyB_ not modelled 7.5 29 PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 47 c2zp2B_ not modelled 7.2 15 PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis 48 d2nwua1 not modelled 7.1 29 Fold:RL5-like Superfamily:RL5-like Family:SSO1042-like 49 c2hx6A_ not modelled 7.1 29 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb 50 d1a9xa1 not modelled 7.0 21 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 51 c2kwvA_ not modelled 7.0 21 PDB header:protein binding/signaling protein Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution structure of ubm1 of murine polymerase iota in complex with2 ubiquitin 52 d2pzza1 not modelled 6.8 43 Fold:RL5-like Superfamily:RL5-like Family:SSO1042-like 53 c3c9gB_ not modelled 6.8 14 PDB header:nucleotide binding protein Chain: B: PDB Molecule:upf0200/upf0201 protein af_1395; PDBTitle: crystal structure of uncharacterized upf0201 protein af_135 54 c2j5dA_ not modelled 6.8 21 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: nmr structure of bnip3 transmembrane domain in lipid2 bicelles 55 c2k1lA_ not modelled 6.6 35 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 56 c2k1lB_ not modelled 6.6 35 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 57 c2k1kB_ not modelled 6.6 35 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 58 c2k1kA_ not modelled 6.6 35 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 59 c1pyuD_ not modelled 6.6 40 PDB header:lyase Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain; PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys 60 d1st6a6 not modelled 6.5 15 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 61 c3d7aB_ not modelled 6.3 8 PDB header:unknown function Chain: B: PDB Molecule:upf0201 protein ph1010; PDBTitle: crystal structure of duf54 family protein ph1010 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 62 d3cx5c1 not modelled 6.3 7 Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 63 c1twcF_ not modelled 6.2 36 PDB header:transcription Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii 23 PDBTitle: rna polymerase ii complexed with gtp 64 d1ppjc1 not modelled 6.2 12 Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 65 d1twff_ not modelled 6.2 36 Fold:RPB6/omega subunit-like Superfamily:RPB6/omega subunit-like Family:RPB6 66 c2vn2B_ not modelled 6.1 14 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 67 c2phcB_ not modelled 6.1 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii 68 c2pmzW_ not modelled 6.1 29 PDB header:translation, transferase Chain: W: PDB Molecule:dna-directed rna polymerase subunit k; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 69 c2rnoA_ not modelled 6.1 38 PDB header:ligase Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: solution structure of the n-terminal sap domain of sumo e3 ligases2 from oryza sativa 70 d1rh5b_ not modelled 6.0 14 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 71 c3mkuA_ not modelled 6.0 17 PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter 72 c2nq2A_ not modelled 5.9 18 PDB header:metal transport Chain: A: PDB Molecule:hypothetical abc transporter permease protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter. 73 d1i1ga1 not modelled 5.7 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 74 d2cyya1 not modelled 5.6 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 75 d1quba5 not modelled 5.6 14 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 76 d1c1za5 not modelled 5.6 15 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 77 d2hwna1 not modelled 5.6 32 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit 78 c3skqA_ not modelled 5.5 13 PDB header:metal transport Chain: A: PDB Molecule:mitochondrial distribution and morphology protein 38; PDBTitle: mdm38 is a 14-3-3-like receptor and associates with the protein2 synthesis machinery at the inner mitochondrial membrane 79 d1bccc2 not modelled 5.4 11 Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 80 d1qkla_ not modelled 5.4 36 Fold:RPB6/omega subunit-like Superfamily:RPB6/omega subunit-like Family:RPB6 81 c1vc3B_ not modelled 5.4 30 PDB header:lyase Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain; PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase 82 c3s1bA_ not modelled 5.4 19 PDB header:signaling protein Chain: A: PDB Molecule:mini-z; PDBTitle: the development of peptide-based tools for the analysis of2 angiogenesis 83 c3gucB_ not modelled 5.3 29 PDB header:transferase Chain: B: PDB Molecule:ubiquitin-like modifier-activating enzyme 5; PDBTitle: human ubiquitin-activating enzyme 5 in complex with amppnp 84 c3iwcD_ not modelled 5.2 17 PDB header:lyase Chain: D: PDB Molecule:s-adenosylmethionine decarboxylase; PDBTitle: t. maritima adometdc complex with s-adenosylmethionine2 methyl ester 85 d1jhfa1 not modelled 5.2 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 86 d1pgja1 not modelled 5.1 7 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 87 d1nvma1 not modelled 5.1 6 Fold:RuvA C-terminal domain-like Superfamily:post-HMGL domain-like Family:DmpG/LeuA communication domain-like 88 d2pgda1 not modelled 5.1 9 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 89 c2ijlB_ not modelled 5.0 25 PDB header:transcription Chain: B: PDB Molecule:molybdenum-binding transcriptional repressor; PDBTitle: the structure of a putative mode from agrobacterium tumefaciens. 90 d1ui5a2 not modelled 5.0 16 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 91 c3h0gF_ not modelled 5.0 36 PDB header:transcription Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 92 d1oxwa_ not modelled 5.0 29 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Patatin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0