Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	K	F	R	V	Q	G	P	T	K	L	Q	G	E	V	T	I	S	G	A	K	N	A	A	L	P	I	L	F	A	A	L	L	A	E	E	P	V	E	I	Q	N	V	P	K	L	K	D	V	D	T	S	M	K	L	L	S	Q	L
Secondary structure
SS confidence
Disorder		?	?					?					?						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	A	K	V	E	R	N	G	S	V	H	I	D	A	R	D	V	N	V	F	C	A	P	Y	D	L	V	K	T	M	R	A	S	I	W	A	L	G	P	L	V	A	R	F	G	Q	G	Q	V	S	L	P	G	G	C	T	I	G	A	R
Secondary structure
SS confidence
Disorder																																																										?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	V	D	L	H	I	S	G	L	E	Q	L	G	A	T	I	K	L	E	E	G	Y	V	K	A	S	V	D	G	R	L	K	G	A	H	I	V	M	D	K	V	S	V	G	A	T	V	T	I	M	C	A	A	T	L	A	E	G	T	T
Secondary structure
SS confidence
Disorder																																																							?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	I	E	N	A	A	R	E	P	E	I	V	D	T	A	N	F	L	I	T	L	G	A	K	I	S	G	Q	G	T	D	R	I	V	I	E	G	V	E	R	L	G	G	G	V	Y	R	V	L	P	D	R	I	E	T	G	T	F	L	V
Secondary structure
SS confidence
Disorder								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	A	A	I	S	R	G	K	I	I	C	R	N	A	Q	P	D	T	L	D	A	V	L	A	K	L	R	D	A	G	A	D	I	E	V	G	E	D	W	I	S	L	D	M	H	G	K	R	P	K	A	V	N	V	R	T	A	P	H	P
Secondary structure
SS confidence
Disorder																																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	F	P	T	D	M	Q	A	Q	F	T	L	L	N	L	V	A	E	G	T	G	F	I	T	E	T	V	F	E	N	R	F	M	H	V	P	E	L	S	R	M	G	A	H	A	E	I	E	S	N	T	V	I	C	H	G	V	E	K	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Sequence		S	G	A	Q	V	M	A	T	D	L	R	A	S	A	S	L	V	L	A	G	C	I	A	E	G	T	T	V	V	D	R	I	Y	H	I	D	R	G	Y	E	R	I	E	D	K	L	R	A	L	G	A	N	I	E	R	V	K	G	E
Secondary structure
SS confidence
Disorder																						?	?	?	?																																	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1uae chain A Region: 1 - 418 Aligned: 418 Modelled: 418 Confidence: 100.0% Identity: 100% Fold: IF3-like Superfamily: EPT/RTPC-like Family: Enolpyruvate transferase, EPT Phyre2 PDB 1ejd chain A Region: 1 - 419 Aligned: 419 Modelled: 419 Confidence: 100.0% Identity: 93% Fold: IF3-like Superfamily: EPT/RTPC-like Family: Enolpyruvate transferase, EPT Phyre2 PDB 3r38 chain A Region: 1 - 419 Aligned: 415 Modelled: 419 Confidence: 100.0% Identity: 50% PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase 1; PDBTitle: 2.23 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase (mura) from listeria monocytogenes egd-e Phyre2 PDB 2yvw chain A Region: 2 - 418 Aligned: 414 Modelled: 417 Confidence: 100.0% Identity: 44% PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase; PDBTitle: crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase2 from aquifex aeolicus vf5 Phyre2 PDB 1g6s chain A Region: 1 - 411 Aligned: 403 Modelled: 407 Confidence: 100.0% Identity: 22% Fold: IF3-like Superfamily: EPT/RTPC-like Family: Enolpyruvate transferase, EPT Phyre2 PDB 3rmt chain B Region: 2 - 416 Aligned: 410 Modelled: 412 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: B: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase 1; PDBTitle: crystal structure of putative 5-enolpyruvoylshikimate-3-phosphate2 synthase from bacillus halodurans c-125 Phyre2 PDB 3roi chain A Region: 1 - 418 Aligned: 407 Modelled: 416 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase; PDBTitle: 2.20 angstrom resolution structure of 3-phosphoshikimate 1-2 carboxyvinyltransferase (aroa) from coxiella burnetii Phyre2 PDB 2o0z chain A Region: 1 - 411 Aligned: 402 Modelled: 407 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase; PDBTitle: mycobacterium tuberculosis epsp synthase in complex with2 product (eps) Phyre2 PDB 2pqd chain A Region: 2 - 416 Aligned: 411 Modelled: 415 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase; PDBTitle: a100g cp4 epsps liganded with (r)-difluoromethyl tetrahedral reaction2 intermediate analog Phyre2 PDB 1rf6 chain A Region: 1 - 409 Aligned: 402 Modelled: 398 Confidence: 100.0% Identity: 24% Fold: IF3-like Superfamily: EPT/RTPC-like Family: Enolpyruvate transferase, EPT Phyre2 PDB 1p88 chain A Region: 25 - 229 Aligned: 204 Modelled: 201 Confidence: 100.0% Identity: 23% Fold: IF3-like Superfamily: EPT/RTPC-like Family: Enolpyruvate transferase, EPT Phyre2 PDB 1qmi chain C Region: 239 - 366 Aligned: 123 Modelled: 128 Confidence: 95.9% Identity: 14% PDB header:rna 3'-terminal phosphate cyclase Chain: C: PDB Molecule:rna 3'-terminal phosphate cyclase; PDBTitle: crystal structure of rna 3'-terminal phosphate cyclase, an2 ubiquitous enzyme with unusual topology Phyre2 PDB 1qmh chain A domain 2 Region: 88 - 283 Aligned: 195 Modelled: 193 Confidence: 95.9% Identity: 12% Fold: IF3-like Superfamily: EPT/RTPC-like Family: RNA 3'-terminal phosphate cyclase, RPTC Phyre2 PDB 3pqv chain D Region: 239 - 366 Aligned: 124 Modelled: 128 Confidence: 95.3% Identity: 15% PDB header:unknown function Chain: D: PDB Molecule:rcl1 protein; PDBTitle: cyclase homolog Phyre2 PDB 1v8g chain B Region: 48 - 136 Aligned: 80 Modelled: 89 Confidence: 50.8% Identity: 14% PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8 Phyre2 PDB 2bpq chain B Region: 48 - 136 Aligned: 75 Modelled: 89 Confidence: 30.5% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure) Phyre2 PDB 1khd chain D Region: 48 - 136 Aligned: 77 Modelled: 86 Confidence: 28.9% Identity: 14% PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum) Phyre2 PDB 3gmg chain B Region: 92 - 226 Aligned: 121 Modelled: 120 Confidence: 28.3% Identity: 21% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis Phyre2 PDB 3ke2 chain A Region: 117 - 153 Aligned: 37 Modelled: 36 Confidence: 25.5% Identity: 16% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein yp_928783.1; PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution Phyre2 PDB 3pc3 chain A Region: 114 - 207 Aligned: 76 Modelled: 78 Confidence: 24.4% Identity: 25% PDB header:lyase Chain: A: PDB Molecule:cg1753, isoform a; PDBTitle: full length structure of cystathionine beta-synthase from drosophila2 in complex with aminoacrylate Phyre2 1 d1uaea_ 2 d1ejda_ 3 c3r38A_ 4 c2yvwA_ 5 d1g6sa_ 6 c3rmtB_ 7 c3roiA_ 8 c2o0zA_ 9 c2pqdA_ 10 d1rf6a_ 11 d1p88a_ 12 c1qmiC_ 13 d1qmha2 14 c3pqvD_ 15 c1v8gB_ 16 c2bpqB_ 17 c1khdD_ 18 c3gmgB_ 19 c3ke2A_ 20 c3pc3A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1uaea_ 100.0 100 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 2 d1ejda_ 100.0 93 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 3 c3r38A_ 100.0 50 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase 1; PDBTitle: 2.23 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase (mura) from listeria monocytogenes egd-e 4 c2yvwA_ 100.0 44 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase; PDBTitle: crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase2 from aquifex aeolicus vf5 5 d1g6sa_ 100.0 22 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 6 c3rmtB_ 100.0 22 PDB header:transferase Chain: B: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase 1; PDBTitle: crystal structure of putative 5-enolpyruvoylshikimate-3-phosphate2 synthase from bacillus halodurans c-125 7 c3roiA_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase; PDBTitle: 2.20 angstrom resolution structure of 3-phosphoshikimate 1-2 carboxyvinyltransferase (aroa) from coxiella burnetii 8 c2o0zA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase; PDBTitle: mycobacterium tuberculosis epsp synthase in complex with2 product (eps) 9 c2pqdA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase; PDBTitle: a100g cp4 epsps liganded with (r)-difluoromethyl tetrahedral reaction2 intermediate analog 10 d1rf6a_ 100.0 24 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 11 d1p88a_ 100.0 23 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 12 c1qmiC_ 95.9 14 PDB header:rna 3'-terminal phosphate cyclase Chain: C: PDB Molecule:rna 3'-terminal phosphate cyclase; PDBTitle: crystal structure of rna 3'-terminal phosphate cyclase, an2 ubiquitous enzyme with unusual topology 13 d1qmha2 95.9 12 Fold:IF3-like Superfamily:EPT/RTPC-like Family:RNA 3'-terminal phosphate cyclase, RPTC 14 c3pqvD_ 95.3 15 PDB header:unknown function Chain: D: PDB Molecule:rcl1 protein; PDBTitle: cyclase homolog 15 c1v8gB_ 50.8 14 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8 16 c2bpqB_ 30.5 20 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure) 17 c1khdD_ 28.9 14 PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum) 18 c3gmgB_ 28.3 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis 19 c3ke2A_ 25.5 16 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein yp_928783.1; PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution 20 c3pc3A_ 24.4 25 PDB header:lyase Chain: A: PDB Molecule:cg1753, isoform a; PDBTitle: full length structure of cystathionine beta-synthase from drosophila2 in complex with aminoacrylate 21 d1v8za1 not modelled 19.7 15 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 22 d2bhsa1 not modelled 18.9 12 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 23 c3h5qA_ not modelled 18.6 22 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus 24 c2dsjA_ not modelled 17.4 17 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 25 d2ex2a1 not modelled 17.3 19 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 26 c1otpA_ not modelled 16.2 20 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 27 d1x9za_ not modelled 13.7 11 Fold:DNA mismatch repair protein MutL Superfamily:DNA mismatch repair protein MutL Family:DNA mismatch repair protein MutL 28 d1jjcb2 not modelled 13.7 16 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 29 d1ml4a2 not modelled 13.5 17 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 30 c2pqmA_ not modelled 13.0 18 PDB header:lyase Chain: A: PDB Molecule:cysteine synthase; PDBTitle: crystal structure of cysteine synthase (oass) from entamoeba2 histolytica at 1.86 a resolution 31 c1o17A_ not modelled 12.7 13 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 32 d1w5da1 not modelled 12.5 22 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 33 d1in0a2 not modelled 12.0 19 Fold:Ferredoxin-like Superfamily:YajQ-like Family:YajQ-like 34 c2eguA_ not modelled 11.9 16 PDB header:transferase Chain: A: PDB Molecule:cysteine synthase; PDBTitle: crystal structure of o-acetylserine sulfhydrase from geobacillus2 kaustophilus hta426 35 c3nr6A_ not modelled 11.4 17 PDB header:hydrolase/inhibitor Chain: A: PDB Molecule:protease p14; PDBTitle: crystal structure of xenotropic murine leukemia virus-related virus2 (xmrv) protease 36 c2j0fC_ not modelled 11.2 20 PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design 37 d1wkva1 not modelled 10.7 22 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 38 d2dy1a4 not modelled 10.7 18 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 39 c3dwgA_ not modelled 10.3 21 PDB header:transferase Chain: A: PDB Molecule:cysteine synthase b; PDBTitle: crystal structure of a sulfur carrier protein complex found in the2 cysteine biosynthetic pathway of mycobacterium tuberculosis 40 c2cxiA_ not modelled 10.0 13 PDB header:ligase Chain: A: PDB Molecule:phenylalanyl-trna synthetase beta chain; PDBTitle: crystal structure of an n-terminal fragment of the phenylalanyl-trna2 synthetase beta-subunit from pyrococcus horikoshii 41 c1brwB_ not modelled 9.9 25 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 42 c3dinB_ not modelled 9.3 14 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 43 c3mjsA_ not modelled 8.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:amphb; PDBTitle: structure of a-type ketoreductases from modular polyketide synthase 44 d1ekxa2 not modelled 8.1 19 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 45 d1z7me1 not modelled 8.1 32 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 46 d1o17a2 not modelled 7.8 12 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 47 d1w79a1 not modelled 7.8 19 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 48 c2vdaA_ not modelled 7.7 16 PDB header:protein transport Chain: A: PDB Molecule:translocase subunit seca; PDBTitle: solution structure of the seca-signal peptide complex 49 c2jwlB_ not modelled 7.7 12 PDB header:membrane protein Chain: B: PDB Molecule:protein tolr; PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data 50 d2atca2 not modelled 6.9 23 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 51 c1in0B_ not modelled 6.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yajq protein; PDBTitle: yajq protein (hi1034) 52 c1f7uA_ not modelled 6.5 17 PDB header:ligase/rna Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of the arginyl-trna synthetase complexed with the2 trna(arg) and l-arg 53 c3g0tA_ not modelled 6.3 15 PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution 54 c3juxA_ not modelled 6.1 14 PDB header:protein transport Chain: A: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima 55 d1nh2a1 not modelled 6.1 13 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 56 c2hzfA_ not modelled 6.1 13 PDB header:electron transport, oxidoreductase Chain: A: PDB Molecule:glutaredoxin-1; PDBTitle: crystal structures of a poxviral glutaredoxin in the oxidized and2 reduced states show redox-correlated structural changes 57 d1z7wa1 not modelled 6.0 17 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 58 c3ihjA_ not modelled 6.0 16 PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp 59 d2ftxb1 not modelled 6.0 8 Fold:Kinetochore globular domain-like Superfamily:Kinetochore globular domain Family:Spc24-like 60 d1uc8a1 not modelled 6.0 13 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Lysine biosynthesis enzyme LysX, N-terminal domain 61 c2ipcB_ not modelled 5.9 14 PDB header:transport protein Chain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer 62 d1y7la1 not modelled 5.8 14 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 63 c2fv4B_ not modelled 5.6 8 PDB header:structural protein, protein binding Chain: B: PDB Molecule:hypothetical 24.6 kda protein in ilv2-ade17 PDBTitle: nmr solution structure of the yeast kinetochore spc24/spc252 globular domain 64 d1p5ja_ not modelled 5.4 17 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 65 c1p5jA_ not modelled 5.4 17 PDB header:lyase Chain: A: PDB Molecule:l-serine dehydratase; PDBTitle: crystal structure analysis of human serine dehydratase 66 c2o2jA_ not modelled 5.3 15 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: mycobacterium tuberculosis tryptophan synthase beta chain2 dimer (apoform) 67 c3r0zA_ not modelled 5.2 16 PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of apo d-serine deaminase from salmonella2 typhimurium 68 d1qnaa1 not modelled 5.2 24 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0