Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	K	E	W	A	T	V	V	S	W	Q	N	G	Q	A	L	V	S	C	D	V	K	A	S	C	S	S	C	A	S	R	A	G	C	G	S	R	V	L	N	K	L	G	P	Q	T	T	H	T	I	V	V	P	C	D	E	P	L	V
Secondary structure
SS confidence
Disorder		?	?	?																				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?				?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	G	Q	K	V	E	L	G	I	A	E	G	S	L	L	S	S	A	L	L	V	Y	M	S	P	L	V	G	L	F	L	I	A	S	L	F	Q	L	L	F	A	S	D	V	A	A	L	C	G	A	I	L	G	G	I	G	G	F	L	I
Secondary structure
SS confidence
Disorder												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Sequence		A	R	G	Y	S	R	K	F	A	A	R	A	E	W	Q	P	I	I	L	S	V	A	L	P	P	G	L	V	R	F	E	T	S	S	E	D	A	S	Q
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1u0l chain A domain 1 Region: 2 - 73 Aligned: 55 Modelled: 72 Confidence: 91.2% Identity: 20% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2z1c chain A domain 1 Region: 6 - 68 Aligned: 39 Modelled: 39 Confidence: 87.4% Identity: 18% Fold: OB-fold Superfamily: HupF/HypC-like Family: HupF/HypC-like Phyre2 PDB 1u0l chain B Region: 2 - 73 Aligned: 55 Modelled: 72 Confidence: 87.1% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima Phyre2 PDB 2ot2 chain A domain 1 Region: 6 - 68 Aligned: 39 Modelled: 39 Confidence: 83.0% Identity: 21% Fold: OB-fold Superfamily: HupF/HypC-like Family: HupF/HypC-like Phyre2 PDB 3d3r chain A Region: 6 - 67 Aligned: 38 Modelled: 38 Confidence: 73.7% Identity: 26% PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 Phyre2 PDB 1t9h chain A domain 1 Region: 1 - 73 Aligned: 54 Modelled: 71 Confidence: 73.5% Identity: 19% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2jnv chain A Region: 7 - 32 Aligned: 24 Modelled: 26 Confidence: 66.1% Identity: 17% PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa Phyre2 PDB 2r9v chain A Region: 2 - 66 Aligned: 65 Modelled: 65 Confidence: 65.2% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution Phyre2 PDB 2jdi chain A domain 2 Region: 2 - 66 Aligned: 65 Modelled: 65 Confidence: 65.1% Identity: 18% Fold: Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase Family: N-terminal domain of alpha and beta subunits of F1 ATP synthase Phyre2 PDB 3d3r chain A domain 1 Region: 6 - 67 Aligned: 38 Modelled: 38 Confidence: 65.0% Identity: 26% Fold: OB-fold Superfamily: HupF/HypC-like Family: HupF/HypC-like Phyre2 PDB 1xhj chain A Region: 7 - 32 Aligned: 24 Modelled: 26 Confidence: 62.9% Identity: 25% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: NifU C-terminal domain-like Phyre2 PDB 2yv5 chain A Region: 5 - 73 Aligned: 51 Modelled: 51 Confidence: 61.5% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus Phyre2 PDB 1sky chain B domain 2 Region: 2 - 66 Aligned: 65 Modelled: 65 Confidence: 53.7% Identity: 12% Fold: Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase Family: N-terminal domain of alpha and beta subunits of F1 ATP synthase Phyre2 PDB 2w6f chain A Region: 2 - 66 Aligned: 64 Modelled: 65 Confidence: 52.4% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha heart isoform, PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 2. Phyre2 PDB 1kmh chain A Region: 2 - 66 Aligned: 64 Modelled: 65 Confidence: 52.0% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:atpase alpha subunit; PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin Phyre2 PDB 2z51 chain A Region: 7 - 33 Aligned: 25 Modelled: 27 Confidence: 49.6% Identity: 20% PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 2, chloroplast; PDBTitle: crystal structure of arabidopsis cnfu involved in iron-2 sulfur cluster biosynthesis Phyre2 PDB 1w0j chain B Region: 2 - 66 Aligned: 64 Modelled: 65 Confidence: 49.2% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:atp synthase alpha chain heart isoform, PDBTitle: beryllium fluoride inhibited bovine f1-atpase Phyre2 PDB 1th5 chain A domain 1 Region: 8 - 29 Aligned: 20 Modelled: 22 Confidence: 47.9% Identity: 5% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: NifU C-terminal domain-like Phyre2 PDB 1fx0 chain A domain 2 Region: 2 - 66 Aligned: 65 Modelled: 65 Confidence: 47.9% Identity: 11% Fold: Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase Family: N-terminal domain of alpha and beta subunits of F1 ATP synthase Phyre2 PDB 2qe7 chain C Region: 4 - 66 Aligned: 62 Modelled: 63 Confidence: 46.4% Identity: 16% PDB header:hydrolase Chain: C: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 Phyre2 1 d1u0la1 2 d2z1ca1 3 c1u0lB_ 4 d2ot2a1 5 c3d3rA_ 6 d1t9ha1 7 c2jnvA_ 8 c2r9vA_ 9 d2jdia2 10 d3d3ra1 11 d1xhja_ 12 c2yv5A_ 13 d1skyb2 14 c2w6fA_ 15 c1kmhA_ 16 c2z51A_ 17 c1w0jB_ 18 d1th5a1 19 d1fx0a2 20 c2qe7C_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1u0la1 91.2 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 2 d2z1ca1 87.4 18 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 3 c1u0lB_ 87.1 20 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 4 d2ot2a1 83.0 21 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 5 c3d3rA_ 73.7 26 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 6 d1t9ha1 73.5 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 7 c2jnvA_ 66.1 17 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 8 c2r9vA_ 65.2 12 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution 9 d2jdia2 65.1 18 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 10 d3d3ra1 65.0 26 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 11 d1xhja_ 62.9 25 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 12 c2yv5A_ 61.5 20 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 13 d1skyb2 53.7 12 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 14 c2w6fA_ 52.4 20 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha heart isoform, PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 2. 15 c1kmhA_ 52.0 14 PDB header:hydrolase Chain: A: PDB Molecule:atpase alpha subunit; PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin 16 c2z51A_ 49.6 20 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 2, chloroplast; PDBTitle: crystal structure of arabidopsis cnfu involved in iron-2 sulfur cluster biosynthesis 17 c1w0jB_ 49.2 20 PDB header:hydrolase Chain: B: PDB Molecule:atp synthase alpha chain heart isoform, PDBTitle: beryllium fluoride inhibited bovine f1-atpase 18 d1th5a1 47.9 5 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 19 d1fx0a2 47.9 11 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 20 c2qe7C_ 46.4 16 PDB header:hydrolase Chain: C: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 21 d2nqra1 not modelled 41.9 13 Fold:beta-clip Superfamily:MoeA C-terminal domain-like Family:MoeA C-terminal domain-like 22 d2gy9q1 not modelled 40.2 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 23 c1s1hQ_ not modelled 39.8 19 PDB header:ribosome Chain: Q: PDB Molecule:40s ribosomal protein s11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 24 d2uubq1 not modelled 37.2 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 25 d1i94q_ not modelled 37.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 26 d1uz5a1 not modelled 36.1 21 Fold:beta-clip Superfamily:MoeA C-terminal domain-like Family:MoeA C-terminal domain-like 27 d1xi8a1 not modelled 34.9 21 Fold:beta-clip Superfamily:MoeA C-terminal domain-like Family:MoeA C-terminal domain-like 28 d1te7a_ not modelled 34.8 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:yqfB-like 29 d2do3a1 not modelled 34.6 9 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 30 d1veha_ not modelled 32.6 30 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 31 d1wu2a1 not modelled 32.2 21 Fold:beta-clip Superfamily:MoeA C-terminal domain-like Family:MoeA C-terminal domain-like 32 c2dpyA_ not modelled 30.7 11 PDB header:hydrolase Chain: A: PDB Molecule:flagellum-specific atp synthase; PDBTitle: crystal structure of the flagellar type iii atpase flii 33 c1t9hA_ not modelled 29.9 21 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 34 d1qfja1 not modelled 24.1 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 35 d1d7qa_ not modelled 22.7 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 36 c1i18B_ not modelled 22.3 24 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli 37 c1hzeB_ not modelled 22.3 24 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli 38 c2oqkA_ not modelled 21.4 18 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 39 d1maba2 not modelled 21.2 18 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 40 c3oaaC_ not modelled 20.4 16 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:atp synthase subunit alpha; PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon 41 c3bbnQ_ not modelled 20.3 14 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 42 c1skyE_ not modelled 20.0 19 PDB header:atp synthase Chain: E: PDB Molecule:f1-atpase; PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3 43 d1v43a2 not modelled 19.5 17 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 44 d1kzla2 not modelled 17.8 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 45 c2e6zA_ not modelled 17.5 31 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 46 d1mvfd_ not modelled 17.4 20 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 47 d1rcqa1 not modelled 17.3 26 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Alanine racemase 48 c2rcnA_ not modelled 17.3 23 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 49 d1kzla1 not modelled 16.9 32 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 50 d1rl2a2 not modelled 16.8 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 51 c2l55A_ not modelled 16.7 20 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 52 d1nppa2 not modelled 16.6 15 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 53 d1i8da1 not modelled 16.4 24 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Riboflavin synthase 54 d1udxa3 not modelled 16.3 23 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 55 c2xznQ_ not modelled 16.2 17 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 56 c2l66B_ not modelled 16.0 19 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 57 d1oxxk1 not modelled 15.6 17 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 58 d1nz9a_ not modelled 15.5 15 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 59 d2ftsa1 not modelled 15.4 15 Fold:beta-clip Superfamily:MoeA C-terminal domain-like Family:MoeA C-terminal domain-like 60 c3ah7A_ not modelled 15.0 15 PDB header:metal binding protein Chain: A: PDB Molecule:[2fe-2s]ferredoxin; PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004 61 c2zkqq_ not modelled 14.7 27 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 62 d1h9ra2 not modelled 14.5 17 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 63 c2odoC_ not modelled 14.1 26 PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of pseudomonas fluorescens alanine racemase 64 d1vfsa1 not modelled 14.1 6 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Alanine racemase 65 d2z0sa1 not modelled 13.2 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 66 c2po8A_ not modelled 13.0 29 PDB header:plant protein Chain: A: PDB Molecule:mcoti-ii; PDBTitle: the structure of a two-disulfide intermediate of mcoti-ii 67 d2ba0a1 not modelled 13.0 8 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 68 c1zeqX_ not modelled 12.9 11 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 69 c2d7gD_ not modelled 12.8 18 PDB header:hydrolase Chain: D: PDB Molecule:primosomal protein n; PDBTitle: crystal structure of the aa complex of the n-terminal2 domain of pria 70 c1pkvB_ not modelled 12.7 22 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin 71 c1pkvA_ not modelled 12.7 22 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin 72 d1vqoa2 not modelled 12.7 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 73 d2bs2b2 not modelled 12.6 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 74 c2dgyA_ not modelled 12.5 20 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 75 c2khiA_ not modelled 12.5 13 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 76 d1h9ra1 not modelled 12.4 11 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 77 d1hr0w_ not modelled 12.2 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 78 c2d0sA_ not modelled 12.2 15 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus 79 d1uufa1 not modelled 12.1 29 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 80 c2l1tA_ not modelled 11.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of the n-terminal domain of np_954075.1 81 c1s6wA_ not modelled 11.4 38 PDB header:antibiotic Chain: A: PDB Molecule:hepcidin; PDBTitle: solution structure of hybrid white striped bass hepcidin 82 c2e70A_ not modelled 11.4 15 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 83 c2qf4A_ not modelled 11.1 10 PDB header:structural protein Chain: A: PDB Molecule:cell shape determining protein mrec; PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form) 84 c3iuwA_ not modelled 11.1 18 PDB header:rna binding protein Chain: A: PDB Molecule:activating signal cointegrator; PDBTitle: crystal structure of activating signal cointegrator (np_814290.1) from2 enterococcus faecalis v583 at 1.58 a resolution 85 c2rjgC_ not modelled 10.6 16 PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of biosynthetic alaine racemase from escherichia2 coli 86 d2qamc2 not modelled 10.5 9 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 87 d2vv5a1 not modelled 10.3 38 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 88 c3a5dB_ not modelled 10.3 11 PDB header:hydrolase Chain: B: PDB Molecule:v-type atp synthase alpha chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase 89 d2etna2 not modelled 10.3 19 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 90 d2awna1 not modelled 10.3 18 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 91 c2e7zA_ not modelled 10.2 29 PDB header:lyase Chain: A: PDB Molecule:acetylene hydratase ahy; PDBTitle: acetylene hydratase from pelobacter acetylenicus 92 c3q87B_ not modelled 10.1 10 PDB header:transferase activator/transferase Chain: B: PDB Molecule:n6 adenine specific dna methylase; PDBTitle: structure of eukaryotic translation termination complex2 methyltransferase mtq2-trm112 93 d1g2914 not modelled 10.1 17 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 94 d2piaa1 not modelled 10.1 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 95 c2etnA_ not modelled 9.8 19 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 96 d1h9ma2 not modelled 9.8 17 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 97 d2q07a1 not modelled 9.7 27 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 98 d2f23a2 not modelled 9.6 19 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 99 d2c34a1 not modelled 9.5 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:ICP-like Family:ICP-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0