Job Description P06986 Confidence 100.00% Date Thu Jan 5 10:59:42 GMT 2012 Rank 78 Aligned Residues 311 % Identity 14% Template d2hoxa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like Resolution 1.40

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.													.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.							.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.					.	.	.																.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.					.	.	.																.	.	.	.	.	.
Query Sequence		R	R	L	G	G	N	G	D	V	W	L	N	A	N	E	Y	P	T	A	V	E	F	Q	L	T	Q	Q	T	L	N	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	P	E	.	.	.	C	Q	P	K	A	V	I	E	N	Y	A	Q	Y	A	G	.	.	.	.	.	.	V	K	P	E	Q	V	L	V	S	R
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.					.	.	.																.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.					.	.	.																.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	K	I	Q	G	C	S	A	D	V	A	S	G	D	G	L	F	L	E	E	Y	W	K	Q	H	K	E	A	S	A	V	L	V	S	P	W	H	R	M	S	Y	F	F	N	P	V	S	N	F	I	S	F	E	L	E	K	T	I	K	E	L	H	E	V	V	G	N	A	A	A	K	D	R	Y	I	V	F	G	V
Template Known Secondary structure						T	T							S				G	G	G					T	T	S										T	T	T	T		S	S	S		S	S			T	T																	T		B			T	T							S
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.									.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.
Query Sequence		G	A	D	E	G	I	E	L	L	I	R	A	F	C	E	P	G	K	D	A	.	.	.	.	.	.	.	.	I	L	Y	C	P	P	T	Y	G	M	Y	S	V	S	A	E	T	I	G	V	E	C	R	T	V	P	T	L	D	N	W	Q	L	D	L	Q	G	I	S	D	K	L	D	G	V	K	V	V	Y	V	C	S
Query Conservation																						.	.	.	.	.	.	.	.
Alig confidence																			.			.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation																			.																																							.	.	.	.	.
Template Sequence		G	V	T	Q	L	I	H	G	L	V	I	S	L	S	P	N	M	.	T	A	T	P	D	A	P	E	S	K	V	V	A	H	A	P	F	Y	P	V	F	R	E	Q	T	K	Y	F	D	K	K	G	Y	V	W	A	G	N	.	.	.	.	.	A	A	N	Y	V	N	V	S	N	P	E	Q	Y	I	E	M	V	T	S
Template Known Secondary structure															S			T	.	T	T		T	T	S									S	S												S			T	T							.	.	.	.	.	G	G	G	G	T	T		S		G	G	G							S
Template Predicted Secondary structure																			.																																							.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.
Predicted Secondary structure																											.																																															.
Query SS confidence																											.																																															.
Query Sequence		P	N	N	P	T	G	Q	L	I	N	P	Q	D	F	R	T	L	L	E	L	T	R	G	K	A	.	I	V	V	A	D	E	A	Y	I	E	F	C	P	Q	A	S	L	A	G	W	L	A	E	Y	P	H	L	A	I	L	R	T	L	S	K	A	F	A	L	A	G	L	R	C	G	F	.	T	L	A	N	E	E	V
Query Conservation																											.																																															.
Alig confidence												.	.	.	.	.	.	.	.	.	.						.																					.	.	.	.																							.
Template Conservation												.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Template Sequence		P	N	N	P	E	G	L	L	R	H	.	.	.	.	.	.	.	.	.	.	A	V	I	K	G	C	K	S	I	Y	D	M	V	Y	Y	W	P	H	Y	T	P	I	K	Y	K	A	.	.	.	.	D	E	D	I	L	L	F	T	M	S	K	F	T	G	H	S	G	S	R	F	G	W	A	L	I	K	D	E	S	V
Template Known Secondary structure		S		T	T	T						.	.	.	.	.	.	.	.	.	.		S	S	T	T								T	T		S	T	T	T	S				S		B	.	.	.	.			S										T	S		G	G	G
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.											.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.													260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	L	L	M	K	V	I	A	P	Y	P	L	S	T	P	V	A	D	I	A	A	Q	A	L	S	P	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	I	V	A	M	R	E	R	V	A	Q	I	I	A	E	R	E	Y	L	I	A	A	L	K	E	I	P	C	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	N	N	L	L	N	Y	M	T	K	N	T	E	G	T	P	R	E	T	Q	L	R	S	L	K	V	L	K	E	V	V	A	M	V	K	T	Q	K	G	T	M	R	D	L	N	T	F	G	F	K	K	L	R	E	R	W	V	N	I	T	A	L	L	D	Q	S	D	R	F	S	Y	Q	E	L	P	Q	S	E	Y	C
Template Known Secondary structure													T	S	S																								T	T	S	T	T	S																					T	T	S	S	S								S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
				289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure		.	.																		.	.																																			.
Query SS confidence		.	.																		.	.																																			.
Query Sequence		.	.	V	E	Q	V	F	D	S	E	T	N	Y	I	L	A	R	F	K	.	.	A	S	S	A	V	F	K	S	L	W	D	Q	G	I	I	L	R	D	Q	N	K	Q	P	S	L	S	G	C	L	R	I	T	V	G	.	T	R	E	E	S	Q	R	V	I	D	A	L	R	A	E
Query Conservation		.	.																		.	.																																			.
Alig confidence		.	.																		.	.																																			.
Template Conservation
Template Sequence		N	Y	F	R	R	M	R	P	P	S	P	S	Y	A	W	V	K	C	E	W	E	E	D	K	D	C	Y	Q	T	F	Q	N	G	R	I	N	T	Q	N	G	V	G	F	E	A	S	S	R	Y	V	R	L	S	L	I	K	T	Q	D	D	F	D	Q	L	M	Y	Y	L	K	D	M
Template Known Secondary structure		T	T	T	T								S								S	G	G	G		S								T	T						G	G	G	G	T	S		T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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