78 d2hoxa1 Probab=100.00  E-value=4.9e-36  Score=254.81  Aligned_columns=311  Identities=14%

Q ss_pred             HHCCCCCEEECCCCCCCCCCCHHHHHHHHC------------CCCC---CCHHHHHHHHHHHHC------CCHHHEEEEC
Q ss_conf             001888708757933597688899996751------------3769---785899999999829------9965789708
Q batch____        24 RRLGGNGDVWLNANEYPTAVEFQLTQQTLN------------RYPE---CQPKAVIENYAQYAG------VKPEQVLVSR   82 (356)
Q Consensus        24 ~~~~~~~~i~L~~nenp~~~~~~~~~~~~~------------~Yp~---~~~~~Lr~~iA~~~~------~~~~~I~~t~   82 (356)
                      ....+...++++.+++.+-.+--...+...            .|++   ++.++|++.|++.++      .++.+|++|+
T Consensus        51 ~~~~~~~~~~~~~gdp~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~  130 (425)
T d2hoxa1          51 SEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV  130 (425)
T ss_dssp             CEECTTCCEECCSCCCGGGHHHHTTSHHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             00136554346678855463664114210001124555456545664344528999999999885088678877699946


Q ss_pred             CHHHHHHHHHHHHHCCCCCE--------EEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf             87999999999841689838--------9970898489999999849888220023358854245543100011113455
Q batch____        83 GADEGIELLIRAFCEPGKDA--------ILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCS  154 (356)
Q Consensus        83 Gs~~al~~~~~~~~~~G~d~--------Vl~~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (356)
                      |++++|+++++++++|| |.        |+++.|+|..|..+++..|.+...+++|     ...........++.+++++
T Consensus       131 G~~~~l~~a~~aL~~pG-d~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~~i~~  204 (425)
T d2hoxa1         131 GVTQLIHGLVISLSPNM-TATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGN-----AANYVNVSNPEQYIEMVTS  204 (425)
T ss_dssp             HHHHHHHHHHHHHSCCT-TTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEEEEE-----GGGGTTCSCGGGEEEEEES
T ss_pred             CHHHHHHHHHHHHCCCC-CCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCC-----HHHHHHHCCCCCEEEEECC
T ss_conf             88999999999864888-61235677435730023778999998559974442479-----8899972488857999817


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCC-EEEEECCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCCEEE-ECCCHHH
Q ss_conf             6764310278999999999852498-9999779520146766353012048816964124444333441123-2089999
Q batch____       155 PNNPTGQLINPQDFRTLLELTRGKA-IVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGF-TLANEEV  232 (356)
Q Consensus       155 ~~np~g~~~~~~~~~~i~~~a~~~~-~iiiDe~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~g~~~g~-~~~~~~~  232 (356)
                      ||||||.+++          |++++ ++++||+|+++.+.......    +++++++|+||.++.+|+|+|| ++.++++
T Consensus       205 P~NPtG~v~~----------a~~~~~~~i~De~y~~~~~~~~~~~~----~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i  270 (425)
T d2hoxa1         205 PNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPIKYKA----DEDILLFTMSKFTGHSGSRFGWALIKDESV  270 (425)
T ss_dssp             SCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSCCCSCB----CCSEEEEEHHHHTSCGGGCCEEEEECCHHH
T ss_pred             CCCCCCEEEE----------EEECCCEEEEECCCCCCCCCCCCCCC----CCEEEEEECCCCCCCCCCCEEEEEECCHHH
T ss_conf             8888560654----------23239689971432343323333456----854999815510123323101899689899


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHHHHCCC------------
Q ss_conf             999999831016564357999999850------------20689999999999999999999984799------------
Q batch____       233 INLLMKVIAPYPLSTPVADIAAQALSP------------QGIVAMRERVAQIIAEREYLIAALKEIPC------------  288 (356)
Q Consensus       233 ~~~l~~~~~~~~~~~~~~~~a~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~------------  288 (356)
                      .+.+.++++..+.+........+....            ....++...++.++++++.+.+.|.+.+.            
T Consensus       271 ~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~  350 (425)
T d2hoxa1         271 YNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYC  350 (425)
T ss_dssp             HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEE
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             99999864105777368999999999602013456555548999999999999999999999863576300345655432


Q ss_pred             --CEEECCCCCEEEEEECC--CHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEC-CHHHHHHHHHHHHHC
Q ss_conf             --25854798418999769--9899999999689299817035886976999808-989999999999750
Q batch____       289 --VEQVFDSETNYILARFK--ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRAE  354 (356)
Q Consensus       289 --~~~~~p~~~~fi~~~~~--~~~~~~~~L~~~GI~v~~g~~f~~~~~~vRis~~-t~ee~~~l~~aLkal  354 (356)
                        ...+.|.+++|+|++++  +.+++.+.|.++||+++||+.|+..++|+|||+. ++|++++++++|+.+
T Consensus       351 ~~~~~~~~~~~~f~w~~~~~~~~~~~~~lL~e~GI~v~pGs~FG~~~~~vRiSl~~~~e~ld~~l~rL~~~  421 (425)
T d2hoxa1         351 NYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDM  421 (425)
T ss_dssp             TTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             21001377876169986789808999999996694997170238988659999139989999999999998