Email l.a.kelley@imperial.ac.uk Description P32689 Date Thu Jan 5 11:50:13 GMT 2012 Unique Job ID e9c80fe6158140ce

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2k0lA_ 95.5 21 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. 2 d1p4ta_ 88.3 18 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 3 d1g90a_ 85.6 19 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 4 c3bryB_ 79.6 17 PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux 5 d1phoa_ 75.0 14 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 6 c3nb3C_ 62.8 26 PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components 7 c3dwoX_ 60.9 12 PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue 8 c3qraA_ 55.2 24 PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis 9 c2jmmA_ 52.0 16 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein 10 d1t16a_ 50.4 13 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Outer membrane protein transport protein 11 d1qjpa_ 47.7 22 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 12 c2f1tB_ 46.3 19 PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw 13 d2zfga1 40.5 16 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 14 c2x27X_ 37.5 14 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa 15 d1ynja1 37.3 18 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain 16 c2jvfA_ 36.4 12 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 17 c2lhfA_ 33.6 20 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein h1; PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles 18 c1qysA_ 29.3 22 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 19 c3brzA_ 28.0 13 PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx 20 c2e0gA_ 25.9 11 PDB header:replication Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: dnaa n-terminal domain 21 c3a2rX_ not modelled 25.5 14 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis 22 d2fgqx1 not modelled 21.5 16 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 23 c2i9zB_ not modelled 20.2 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative septation protein spovg; PDBTitle: structural genomics, the crystal structure of full-length spovg from2 staphylococcus epidermidis atcc 12228 24 d2i9xa1 not modelled 20.2 22 Fold:SpoVG-like Superfamily:SpoVG-like Family:SpoVG-like 25 d1uynx_ not modelled 15.9 11 Fold:Transmembrane beta-barrels Superfamily:Autotransporter Family:Autotransporter 26 d1bdfa1 not modelled 14.0 33 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain 27 d1umha_ not modelled 10.3 25 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:F-box associated region, FBA 28 d1u69a_ not modelled 10.3 23 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:3-demethylubiquinone-9 3-methyltransferase 29 d1kpta_ not modelled 9.5 35 Fold:Yeast killer toxins Superfamily:Yeast killer toxins Family:Virally encoded KP4 toxin 30 c2gjhA_ not modelled 9.1 30 PDB header:de novo protein Chain: A: PDB Molecule:designed protein; PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7) 31 d2gufa1 not modelled 9.0 18 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 32 c2x4mD_ not modelled 8.6 19 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 33 c3qwnC_ not modelled 8.5 23 PDB header:antitoxin Chain: C: PDB Molecule:hypothetical nigd-like protein; PDBTitle: crystal structure of a hypothetical nigd-like protein (baccac_03262)2 from bacteroides caccae at 2.42 a resolution 34 d1tdha3 not modelled 8.0 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 35 c2djmA_ not modelled 7.7 16 PDB header:sugar binding protein Chain: A: PDB Molecule:glucoamylase a; PDBTitle: solution structure of n-terminal starch-binding domain of2 glucoamylase from rhizopus oryzae 36 c3qv0A_ not modelled 7.7 16 PDB header:protein binding Chain: A: PDB Molecule:mitochondrial acidic protein mam33; PDBTitle: crystal structure of saccharomyces cerevisiae mam33 37 d1smya1 not modelled 7.7 20 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RNA polymerase alpha subunit dimerisation domain 38 d1f2va_ not modelled 7.6 18 Fold:Flavodoxin-like Superfamily:Precorrin-8X methylmutase CbiC/CobH Family:Precorrin-8X methylmutase CbiC/CobH 39 d1txka2 not modelled 7.0 18 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:MdoG-like 40 d1kkea2 not modelled 7.0 20 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Reovirus attachment protein sigma 1 head domain 41 d1smyc_ not modelled 6.9 32 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta 42 c3e7dC_ not modelled 6.9 18 PDB header:isomerase Chain: C: PDB Molecule:cobh, precorrin-8x methylmutase; PDBTitle: crystal structure of precorrin-8x methyl mutase cbic/cobh from2 brucella melitensis 43 c2r28D_ not modelled 6.9 18 PDB header:metal binding protein/hydrolase Chain: D: PDB Molecule:serine/threonine-protein phosphatase 2b PDBTitle: the complex structure of calmodulin bound to a calcineurin2 peptide 44 c1txkA_ not modelled 6.7 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:glucans biosynthesis protein g; PDBTitle: crystal structure of escherichia coli opgg 45 c2jziB_ not modelled 6.7 20 PDB header:metal binding protein Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2b PDBTitle: structure of calmodulin complexed with the calmodulin2 binding domain of calcineurin 46 c3cjtP_ not modelled 6.5 23 PDB header:transferase/ribosomal protein Chain: P: PDB Molecule:50s ribosomal protein l11; PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11 47 d1kk1a2 not modelled 6.5 25 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 48 c2rqeA_ not modelled 6.4 75 PDB header:sugar binding protein Chain: A: PDB Molecule:beta-1,3-glucan-binding protein; PDBTitle: solution structure of the silkworm bgrp/gnbp3 n-terminal2 domain reveals the mechanism for b-1,3-glucan specific3 recognition 49 c3fhhA_ not modelled 6.4 6 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane heme receptor shua; PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae 50 c2afvB_ not modelled 6.3 24 PDB header:isomerase Chain: B: PDB Molecule:cobalamin biosynthesis precorrin isomerase; PDBTitle: the crystal structure of putative precorrin isomerase cbic2 in cobalamin biosynthesis 51 c1uv7A_ not modelled 6.2 10 PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae 52 d1uv7a_ not modelled 6.2 10 Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM 53 d2cura2 not modelled 6.2 55 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 54 c3ie4A_ not modelled 6.2 63 PDB header:immune system Chain: A: PDB Molecule:gram-negative binding protein 3; PDBTitle: b-glucan binding domain of drosophila gnbp3 defines a novel2 family of pattern recognition receptor 55 d2jnaa1 not modelled 6.0 24 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 56 c3iydC_ not modelled 5.7 27 PDB header:transcription/dna Chain: C: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex 57 c2khaA_ not modelled 5.5 44 PDB header:sugar binding protein Chain: A: PDB Molecule:beta-1,3-glucan-binding protein; PDBTitle: solution structure of a pathogen recognition domain from a2 lepidopteran insect, plodia interpunctella 58 c1kkeA_ not modelled 5.4 20 PDB header:viral protein Chain: A: PDB Molecule:sigma 1 protein; PDBTitle: crystal structure of reovirus attachment protein sigma12 trimer 59 d2d8za1 not modelled 5.4 55 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 60 d2cnaa_ not modelled 5.4 19 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Legume lectins 61 d2gr8a1 not modelled 5.4 18 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 62 c3jsrA_ not modelled 5.4 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:all0216 protein; PDBTitle: x-ray structure of all0216 protein from nostoc sp. pcc 7120 at the2 resolution 1.8a. northeast structural genomics consortium target3 nsr236 63 d2pwwa1 not modelled 5.3 21 Fold:TBP-like Superfamily:YugN-like Family:YugN-like 64 c3e8vA_ not modelled 5.2 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:possible transglutaminase-family protein; PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis 65 d1ou0a_ not modelled 5.2 35 Fold:Flavodoxin-like Superfamily:Precorrin-8X methylmutase CbiC/CobH Family:Precorrin-8X methylmutase CbiC/CobH 66 c3nsgA_ not modelled 5.2 15 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi 67 c3o27B_ not modelled 5.2 17 PDB header:dna binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx 68 c3qq2C_ not modelled 5.2 15 PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka 69 d3prna_ not modelled 5.1 11 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 70 d3cjsb1 not modelled 5.1 27 Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain 71 d1h9wa_ not modelled 5.0 19 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Legume lectins 72 d2okga1 not modelled 5.0 13 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like