Job Description P69856 Confidence 82.50% Date Thu Jan 5 12:12:14 GMT 2012 Rank 34 Aligned Residues 164 % Identity 13% Template d3prna_ SCOP info Transmembrane beta-barrels Porins Porin Resolution 1.90

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	H	A	Y	E	T	R	L	K	V	S	E	G	W	Q	N	G	W	W	A	S	M	E	S	N	T	W	N	T	I	H	D	N	K	K	E	N	A	A	L	N	D	V	Q	V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	R	Y	G	P	Y	V	K
Query Conservation
Alig confidence																	.											.	.	.	.	.																										.
Template Conservation																	.											.	.	.	.	.																										.
Template Sequence		G	A	L	D	N	Y	N	G	I	A	V	T	Y	S	I	.	S	G	V	N	L	Y	L	S	Y	V	.	.	.	.	.	D	P	D	Q	T	V	D	S	S	L	V	T	E	E	F	G	I	A	A	D	W	S	N	D	M	.	I	S	L	A	A	A	Y	T	T	D	A	G	G	I	V	D	N	D	I	A	F	V	G
Template Known Secondary structure		S	T	T	T	T											.	S	S									.	.	.	.	.		T	T	T	T	S		G	G	G	S													S	S	.										S	G	G	G		T	T
Template Predicted Secondary structure																	.											.	.	.	.	.																										.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F
Query Conservation
Alig confidence									.											.	.	.	.	.	.	.	.	.	.	.																				.													.	.	.	.	.	.	.										.	.
Template Conservation									.											.	.	.	.	.	.	.	.	.	.	.																				.													.	.	.	.	.	.	.										.	.
Template Sequence		A	A	Y	K	F	N	D	.	A	G	T	V	G	L	N	W	Y	D	.	.	.	.	.	.	.	.	.	.	.	N	G	L	S	T	A	G	D	Q	V	T	L	Y	G	N	Y	A	F	G	.	A	T	T	V	R	A	Y	V	S	D	I	D	.	.	.	.	.	.	.	R	A	G	A	D	T	A	Y	G	.	.	I
Template Known Secondary structure							S	S	.	S										.	.	.	.	.	.	.	.	.	.	.		T	T	S	T	T		S											T	.	T												.	.	.	.	.	.	.	S	T	T							.	.
Template Predicted Secondary structure									.											.	.	.	.	.	.	.	.	.	.	.																				.													.	.	.	.	.	.	.										.	.
Template SS confidence
		198	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.												.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.								.	.	.	.	250	.	.	.	.			.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	Q	Y	H	M	T	P	D	I	T	P	Y	I	E	Y	D	Y	L	D	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V	S	F	K
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	D	Y	Q	F	A	E	G	V	K	V	S	G	S	V	Q	S	G	F	A	.	.	.	.	.	.	.	.	.	.	N	E	T	V	A	D	V	G	V	R	F	D
Template Known Secondary structure									T	T											T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.											.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions