Job Description P64554 Confidence 99.56% Date Wed Jan 25 15:21:00 GMT 2012 Rank 4 Aligned Residues 177 % Identity 17% Template c3rfaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Resolution 2.05 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.
Predicted Secondary structure															.																																																																	.
Query SS confidence															.																																																																	.
Query Sequence		Y	F	T	G	V	P	A	I	F	I	R	L	Q	.	G	C	P	V	G	C	A	W	C	D	T	K	H	T	W	E	K	L	E	D	R	E	V	S	L	F	S	I	L	A	K	T	K	E	S	D	K	W	G	A	A	S	S	E	D	L	L	A	V	I	G	R	Q	G	Y	T	A	R	H	V	V	I	T	G	.	G
Query Conservation															.																																																																	.
Alig confidence															.										.	.	.																									.	.	.	.	.	.	.																						.
Template Conservation																									.	.	.																									.	.	.	.	.	.	.
Template Sequence		P	E	D	D	R	A	T	L	C	V	S	S	Q	V	G	C	A	L	E	C	K	F	C	.	.	.	S	T	A	Q	Q	G	F	N	R	N	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	.	.	.	.	.	.	.	K	I	V	G	A	A	K	V	T	G	Q	R	P	I	T	N	V	V	M	M	G	M	G
Template Known Secondary structure				S	S													S	S			T	T		.	.	.	G	G	G	T	T																				.	.	.	.	.	.	.										S	S		S		S						S	S	S
Template Predicted Secondary structure																									.	.	.																									.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.								.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		95	.	.	.	.	100			.	.	.	.	.	.	.	.		.	110	.	.	.						.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure								.	.									.						.	.	.	.	.												.	.	.	.
Query SS confidence								.	.									.						.	.	.	.	.												.	.	.	.
Query Sequence		E	P	C	I	H	D	.	.	L	L	P	L	T	D	L	L	.	E	K	N	G	F	.	.	.	.	.	S	C	Q	I	E	T	S	G	T	H	E	.	.	.	.	V	R	C	T	P	N	T	W	V	T	V	S	P	K	L	N	M	R	G	G	Y	E	V	L	S	Q	A	L	E	R	A	N	E	I	K	H	P	V
Query Conservation								.	.									.						.	.	.	.	.												.	.	.	.
Alig confidence								.	.									.						.	.	.	.	.												.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	L	L	N	L	N	N	V	V	P	A	M	E	I	M	L	D	D	F	G	F	G	L	S	K	R	R	V	T	L	S	T	S	G	V	V	P	A	L	D	K	L	G	D	M	I	D	V	A	L	A	I	S	L	H	A	P	N	D	E	I	R	D	E	I	V	P	I	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			G	G	G														S	T	T	T	T				G	G	G						S																								S	S								S	G	G	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.									180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.
Query Sequence		G	R	V	R	D	I	E	A	L	D	E	L	L	A	T	L	T	.	.	.	.	.	.	.	.	D	D	K	P	R	V	I	A	L	Q	P	I	S	Q	K	D	D	A	T	R	L	C	I	E	T	C	I	A	R	N	W	R	L	S	M
Query Conservation																			.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	K	Y	N	I	E	T	F	L	A	A	V	R	R	Y	L	E	K	S	N	A	N	Q	G	R	V	T	I	E	Y	V	M	L	D	H	V	N	D	G	T	E	H	A	H	Q	L	A	E	L	L	K	D	T	P	C	K	I	N	L
Template Known Secondary structure		G	G	T	S																	T	T	T	T	T									B	T	T	T	T		S											T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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