Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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60

Sequence

M

S

V

L

R

S

L

L

T

A

G

V

L

A

S

G

L

L

W

S

L

N

G

I

T

A

T

P

A

A

Q

A

S

D

D

R

Y

E

V

T

Q

Q

R

N

P

D

A

A

C

L

D

C

H

K

P

D

T

E

G

M

Secondary structure

SS confidence

Disorder

?

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?

Disorder confidence

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70

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80

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90

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100

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110

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120

Sequence

H

G

K

H

A

S

V

I

N

P

N

N

K

L

P

V

T

C

T

N

C

H

G

Q

P

S

P

Q

H

R

E

G

V

K

D

V

M

R

F

N

E

P

M

Y

K

V

G

E

Q

N

S

V

C

M

S

C

H

L

P

E

Secondary structure

SS confidence

Disorder

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?

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?

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?

Disorder confidence

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130

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140

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150

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160

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170

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180

Sequence

Q

L

Q

K

A

F

W

P

H

D

V

H

V

T

K

V

A

C

A

S

C

H

S

L

H

P

Q

Q

D

T

M

Q

T

L

S

D

K

G

R

I

K

I

C

V

D

C

H

S

D

Q

R

T

N

P

N

F

N

P

A

S

Secondary structure

SS confidence

Disorder

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?

?

?

?

?

?

?

?

?

Disorder confidence

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Sequence

V

P

L

L

K

E

Q

P

Secondary structure

SS confidence

Disorder

?

?

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?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2p0b chain A Region: 44 - 185 Aligned: 142 Modelled: 142 Confidence: 99.8% Identity: 100% PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb Phyre2 PDB 1oah chain A Region: 37 - 170 Aligned: 134 Modelled: 134 Confidence: 99.3% Identity: 26% PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). Phyre2 PDB 1oah chain A Region: 37 - 170 Aligned: 134 Modelled: 134 Confidence: 99.3% Identity: 26% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2rdz chain A domain 1 Region: 46 - 169 Aligned: 124 Modelled: 124 Confidence: 99.1% Identity: 23% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fs7 chain A Region: 47 - 169 Aligned: 123 Modelled: 123 Confidence: 99.1% Identity: 29% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2j7a chain C Region: 5 - 186 Aligned: 143 Modelled: 155 Confidence: 99.1% Identity: 15% PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris Phyre2 PDB 1fs9 chain A Region: 47 - 169 Aligned: 123 Modelled: 123 Confidence: 99.1% Identity: 29% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex Phyre2 PDB 1qdb chain A Region: 47 - 169 Aligned: 123 Modelled: 123 Confidence: 99.0% Identity: 21% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1m1q chain A Region: 90 - 172 Aligned: 73 Modelled: 83 Confidence: 99.0% Identity: 30% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 3pmq chain A Region: 39 - 172 Aligned: 124 Modelled: 134 Confidence: 98.9% Identity: 19% PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf Phyre2 PDB 2k3v chain A Region: 77 - 173 Aligned: 72 Modelled: 82 Confidence: 98.8% Identity: 36% PDB header:electron transport Chain: A: PDB Molecule:tetraheme cytochrome c-type; PDBTitle: solution structure of a tetrahaem cytochrome from2 shewanella frigidimarina Phyre2 PDB 2vr0 chain A Region: 47 - 170 Aligned: 124 Modelled: 124 Confidence: 98.7% Identity: 25% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor Phyre2 PDB 2j7a chain E Region: 47 - 170 Aligned: 124 Modelled: 124 Confidence: 98.7% Identity: 23% PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris Phyre2 PDB 2cvc chain A Region: 47 - 180 Aligned: 123 Modelled: 134 Confidence: 98.7% Identity: 17% PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c precursor; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (hildenborough) Phyre2 PDB 1y0p chain A domain 1 Region: 74 - 186 Aligned: 86 Modelled: 102 Confidence: 98.6% Identity: 29% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1fgj chain A Region: 45 - 170 Aligned: 116 Modelled: 118 Confidence: 98.6% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase Phyre2 PDB 1fgj chain A Region: 45 - 170 Aligned: 116 Modelled: 118 Confidence: 98.6% Identity: 24% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 2e84 chain A Region: 47 - 179 Aligned: 122 Modelled: 133 Confidence: 98.6% Identity: 17% PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (miyazaki f) in the presence3 of zinc ion Phyre2 PDB 3f29 chain A Region: 15 - 169 Aligned: 155 Modelled: 155 Confidence: 98.6% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite Phyre2 PDB 3oue chain A Region: 49 - 174 Aligned: 106 Modelled: 107 Confidence: 98.5% Identity: 25% PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of c-terminal hexaheme fragment of gsu1996 Phyre2 1 c2p0bA_ 2 c1oahA_ 3 d1oaha_ 4 d2rdza1 5 d1fs7a_ 6 c2j7aC_ 7 c1fs9A_ 8 d1qdba_ 9 d1m1qa_ 10 c3pmqA_ 11 c2k3vA_ 12 c2vr0A_ 13 c2j7aE_ 14 c2cvcA_ 15 d1y0pa1 16 c1fgjA_ 17 d1fgja_ 18 c2e84A_ 19 c3f29A_ 20 c3oueA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2p0bA_ 99.8 100 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-type protein nrfb; PDBTitle: crystal structure of chemically-reduced e.coli nrfb 2 c1oahA_ 99.3 26 PDB header:reductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa). 3 d1oaha_ 99.3 26 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 4 d2rdza1 99.1 23 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 5 d1fs7a_ 99.1 29 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 6 c2j7aC_ 99.1 15 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 7 c1fs9A_ 99.1 29 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex 8 d1qdba_ 99.0 21 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 9 d1m1qa_ 99.0 30 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 10 c3pmqA_ 98.9 19 PDB header:electron transport Chain: A: PDB Molecule:decaheme cytochrome c mtrf; PDBTitle: crystal structure of the outer membrane decaheme cytochrome mtrf 11 c2k3vA_ 98.8 36 PDB header:electron transport Chain: A: PDB Molecule:tetraheme cytochrome c-type; PDBTitle: solution structure of a tetrahaem cytochrome from2 shewanella frigidimarina 12 c2vr0A_ 98.7 25 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor 13 c2j7aE_ 98.7 23 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 14 c2cvcA_ 98.7 17 PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c precursor; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (hildenborough) 15 d1y0pa1 98.6 29 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 16 c1fgjA_ 98.6 24 PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxylamine oxidoreductase; PDBTitle: x-ray structure of hydroxylamine oxidoreductase 17 d1fgja_ 98.6 24 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 18 c2e84A_ 98.6 17 PDB header:electron transport Chain: A: PDB Molecule:high-molecular-weight cytochrome c; PDBTitle: crystal structure of high-molecular weight cytochrome c2 from desulfovibrio vulgaris (miyazaki f) in the presence3 of zinc ion 19 c3f29A_ 98.6 21 PDB header:oxidoreductase Chain: A: PDB Molecule:eight-heme nitrite reductase; PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite 20 c3oueA_ 98.5 25 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of c-terminal hexaheme fragment of gsu1996 21 d1d4ca1 not modelled 98.5 26 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 22 d1sp3a_ not modelled 98.5 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 23 d1qo8a1 not modelled 98.5 30 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 24 c1qo8A_ not modelled 98.3 32 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase 25 d2cvca1 not modelled 98.3 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 26 c3ouqA_ not modelled 98.3 20 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of n-terminal hexaheme fragment of gsu1996 27 d1ft5a_ not modelled 98.3 20 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 28 c1jrxA_ not modelled 98.2 34 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina 29 c3ov0A_ not modelled 97.8 26 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: structure of dodecaheme cytochrome c gsu1996 30 d1ofwa_ not modelled 97.8 15 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 31 c2a3mA_ not modelled 97.7 20 PDB header:electron transport Chain: A: PDB Molecule:cog3005: nitrate/tmao reductases, membrane-bound tetraheme PDBTitle: structure of desulfovibrio desulfuricans g20 tetraheme cytochrome2 (oxidized form) 32 c1z1nX_ not modelled 97.7 18 PDB header:electron transport Chain: X: PDB Molecule:sixteen heme cytochrome; PDBTitle: crystal structure of the sixteen heme cytochrome from desulfovibrio2 gigas 33 d19hca_ not modelled 97.5 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 34 d1duwa_ not modelled 97.1 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 35 d1i77a_ not modelled 97.0 18 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 36 d1j0pa_ not modelled 96.9 21 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 37 c2bq4A_ not modelled 96.6 18 PDB header:electron transport Chain: A: PDB Molecule:basic cytochrome c3; PDBTitle: crystal structure of type i cytochrome c3 from2 desulfovibrio africanus 38 d1aqea_ not modelled 96.5 26 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 39 d3caoa_ not modelled 96.2 23 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 40 d1up9a_ not modelled 96.2 20 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 41 d2cy3a_ not modelled 96.2 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 42 c1d4cB_ not modelled 96.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:flavocytochrome c fumarate reductase; PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1 43 d2ctha_ not modelled 95.7 21 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 44 d1gyoa_ not modelled 95.6 16 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 45 c3h34A_ not modelled 94.6 24 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c7; PDBTitle: ppce, a cytochrome c7 from geobacter sulfurreducens 46 c3h4nB_ not modelled 94.6 18 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c7; PDBTitle: ppcd, a cytochrome c7 from geobacter sulfurreducens 47 d1wada_ not modelled 94.1 14 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 48 d1rwja_ not modelled 93.7 23 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 49 c3h33A_ not modelled 92.8 23 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c7; PDBTitle: ppcc, a cytochrome c7 from geobacter sulfurreducens 50 d1hh5a_ not modelled 92.5 20 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 51 d1os6a_ not modelled 92.1 23 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Cytochrome c3-like 52 d1ogyb_ not modelled 90.8 17 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 53 d2i5nc1 not modelled 88.5 13 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 54 c2jblC_ not modelled 88.5 13 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis 55 d1h21a_ not modelled 82.5 27 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 56 c1jniA_ not modelled 76.6 22 PDB header:oxidoreductase Chain: A: PDB Molecule:diheme cytochrome c napb; PDBTitle: structure of the napb subunit of the periplasmic nitrate2 reductase from haemophilus influenzae. 57 d1jnia_ not modelled 76.6 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 58 c3o5aB_ not modelled 64.7 27 PDB header:oxidoreductase Chain: B: PDB Molecule:diheme cytochrome c napb; PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids 59 c3o0rC_ not modelled 57.8 10 PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 60 d1pbya2 not modelled 47.3 31 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 61 d1iqca1 not modelled 44.4 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 62 d1jmxa2 not modelled 44.1 38 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 63 d1nmla1 not modelled 42.1 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 64 d1eb7a1 not modelled 40.7 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 65 d1bbha_ not modelled 36.6 31 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 66 c2czsB_ not modelled 35.5 18 PDB header:electron transport Chain: B: PDB Molecule:cytochrome c, putative; PDBTitle: crystal structure analysis of the diheme c-type cytochrome dhc2 67 d1mqva_ not modelled 33.5 38 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 68 d1eysc_ not modelled 32.5 36 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 69 c1eysC_ not modelled 32.5 36 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum 70 c3l4oB_ not modelled 30.5 36 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:methylamine utilization protein maug; PDBTitle: crystal structure of the maug/pre-methylamine dehydrogenase complex2 after treatment with hydrogen peroxide 71 d1gqaa_ not modelled 30.3 38 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 72 c1nmlA_ not modelled 28.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0) 73 c2c1uB_ not modelled 28.8 14 PDB header:oxidoreductase Chain: B: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form 74 d2j8wa1 not modelled 28.8 25 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 75 d1fcdc2 not modelled 28.8 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 76 d1e85a_ not modelled 28.1 33 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 77 d1s05a_ not modelled 27.7 38 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 78 c3hq7A_ not modelled 25.1 27 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant 79 c3o5cA_ not modelled 25.1 24 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis 80 d1cpqa_ not modelled 24.8 45 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 81 d2ccya_ not modelled 24.3 36 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 82 c2vhdB_ not modelled 23.2 14 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form 83 d1h32a1 not modelled 23.1 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA 84 d1wejf_ not modelled 23.0 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 85 c3oa8B_ not modelled 22.7 38 PDB header:heme-binding protein/heme-binding protei Chain: B: PDB Molecule:soxx; PDBTitle: diheme soxax 86 c1w2lA_ not modelled 22.6 50 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase 87 c1iqcB_ not modelled 21.7 29 PDB header:oxidoreductase Chain: B: PDB Molecule:di-heme peroxidase; PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea 88 c2zxyA_ not modelled 21.5 33 PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus 89 d1c53a_ not modelled 21.1 36 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 90 c2d0sA_ not modelled 20.9 19 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus 91 d1h32a2 not modelled 20.8 26 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA 92 d1nmla2 not modelled 20.2 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 93 d1m70a2 not modelled 20.0 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 94 c3oa8A_ not modelled 19.8 20 PDB header:heme-binding protein/heme-binding protei Chain: A: PDB Molecule:soxa; PDBTitle: diheme soxax 95 d1h32b_ not modelled 19.4 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 96 d1gu2a_ not modelled 19.0 27 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 97 c1zzhA_ not modelled 19.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c peroxidase; PDBTitle: structure of the fully oxidized di-heme cytochrome c2 peroxidase from r. capsulatus 98 d3c2ca_ not modelled 18.5 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 99 c2c1dB_ not modelled 18.4 24 PDB header:oxidoreductase Chain: B: PDB Molecule:soxx; PDBTitle: crystal structure of soxxa from p. pantotrophus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0