Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A738
DateThu Jan 5 11:04:42 GMT 2012
Unique Job IDe4233db5acd76b2b

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2eeyA_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis;
PDBTitle: structure of gk0241 protein from geobacillus kaustophilus
Confidence and coverage
Confidence:100.0% Coverage: 98%
158 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMIIDGRHHKGDVFATARI
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Disorder  ???????





































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   .........70.........80.........90.........100.........110.........120
Sequence  AGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAAS
Secondary structure 



















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   .........130.........140.........150.........160.
Sequence  VAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEADD
Secondary structure 









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Disorder 













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??????
?????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2eey chain A

3D model

Region: 2 - 159
Aligned: 158
Modelled: 158
Confidence: 100.0%
Identity: 50%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis;
PDBTitle: structure of gk0241 protein from geobacillus kaustophilus

Phyre2

PDB 2ide chain E

3D model

Region: 11 - 157
Aligned: 147
Modelled: 147
Confidence: 100.0%
Identity: 54%
PDB header:biosynthetic protein
Chain: E: PDB Molecule:molybdenum cofactor biosynthesis protein c;
PDBTitle: crystal structure of the molybdenum cofactor biosynthesis protein c2 (ttha1789) from thermus theromophilus hb8

Phyre2

PDB 1ekr chain A

3D model

Region: 11 - 156
Aligned: 143
Modelled: 146
Confidence: 100.0%
Identity: 100%
Fold: Ferredoxin-like
Superfamily: Molybdenum cofactor biosynthesis protein C, MoaC
Family: Molybdenum cofactor biosynthesis protein C, MoaC

Phyre2

PDB 2ekn chain C

3D model

Region: 13 - 152
Aligned: 138
Modelled: 140
Confidence: 100.0%
Identity: 41%
PDB header:biosynthetic protein
Chain: C: PDB Molecule:probable molybdenum cofactor biosynthesis protein c;
PDBTitle: structure of ph1811 protein from pyrococcus horikoshii

Phyre2

PDB 2ohd chain B

3D model

Region: 13 - 146
Aligned: 132
Modelled: 134
Confidence: 100.0%
Identity: 45%
PDB header:biosynthetic protein
Chain: B: PDB Molecule:probable molybdenum cofactor biosynthesis protein c;
PDBTitle: crystal structure of hypothetical molybdenum cofactor biosynthesis2 protein c from sulfolobus tokodaii

Phyre2

PDB 1sfe chain A

3D model

Region: 36 - 79
Aligned: 41
Modelled: 44
Confidence: 37.0%
Identity: 15%
PDB header:dna-binding protein
Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase;
PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli

Phyre2

PDB 1oh4 chain A

3D model

Region: 137 - 150
Aligned: 14
Modelled: 14
Confidence: 33.7%
Identity: 43%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: Family 27 carbohydrate binding module, CBM27

Phyre2

PDB 3ct5 chain A

3D model

Region: 15 - 65
Aligned: 40
Modelled: 51
Confidence: 31.7%
Identity: 30%
PDB header:hydrolase
Chain: A: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail

Phyre2

PDB 2cqa chain A domain 1

3D model

Region: 23 - 55
Aligned: 33
Modelled: 33
Confidence: 22.5%
Identity: 15%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: TIP49 domain

Phyre2

PDB 1bu2 chain A domain 2

3D model

Region: 65 - 81
Aligned: 17
Modelled: 17
Confidence: 14.8%
Identity: 47%
Fold: Cyclin-like
Superfamily: Cyclin-like
Family: Cyclin

Phyre2

PDB 2b5l chain C

3D model

Region: 147 - 159
Aligned: 13
Modelled: 13
Confidence: 13.0%
Identity: 31%
PDB header:protein binding/viral protein
Chain: C: PDB Molecule:nonstructural protein v;
PDBTitle: crystal structure of ddb1 in complex with simian virus 5 v2 protein

Phyre2

PDB 1vqo chain N domain 1

3D model

Region: 10 - 71
Aligned: 62
Modelled: 62
Confidence: 11.1%
Identity: 15%
Fold: Ribonuclease H-like motif
Superfamily: Translational machinery components
Family: Ribosomal protein L18 and S11

Phyre2

PDB 3pn1 chain A

3D model

Region: 31 - 67
Aligned: 37
Modelled: 37
Confidence: 10.3%
Identity: 19%
PDB header:ligase/ligase inhibitor
Chain: A: PDB Molecule:dna ligase;
PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo

Phyre2

PDB 2p0x chain A

3D model

Region: 124 - 131
Aligned: 8
Modelled: 8
Confidence: 9.2%
Identity: 75%
PDB header:de novo protein
Chain: A: PDB Molecule:abiotic atp-binding, folding optimized protein;
PDBTitle: solution structure of a non-biological atp-binding protein

Phyre2

PDB 3bdq chain B

3D model

Region: 6 - 64
Aligned: 59
Modelled: 59
Confidence: 9.0%
Identity: 24%
PDB header:lipid transport
Chain: B: PDB Molecule:sterol carrier protein 2-like 2;
PDBTitle: room tempreture crystal structure of sterol carrier protein-2 2 like-2

Phyre2

PDB 2xuv chain B

3D model

Region: 36 - 81
Aligned: 41
Modelled: 46
Confidence: 8.8%
Identity: 22%
PDB header:unknown function
Chain: B: PDB Molecule:hdeb;
PDBTitle: the structure of hdeb

Phyre2

PDB 1ikt chain A

3D model

Region: 16 - 64
Aligned: 49
Modelled: 49
Confidence: 8.1%
Identity: 14%
Fold: SCP-like
Superfamily: SCP-like
Family: Sterol carrier protein, SCP

Phyre2

PDB 2f1f chain A domain 2

3D model

Region: 12 - 59
Aligned: 41
Modelled: 48
Confidence: 7.9%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: ACT-like
Family: IlvH-like

Phyre2

PDB 2xsk chain A

3D model

Region: 73 - 104
Aligned: 29
Modelled: 32
Confidence: 7.7%
Identity: 28%
PDB header:chaperone
Chain: A: PDB Molecule:csgc;
PDBTitle: e. coli curli protein csgc - secys

Phyre2

PDB 2gp4 chain A domain 1

3D model

Region: 16 - 55
Aligned: 40
Modelled: 40
Confidence: 7.6%
Identity: 25%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: LeuD/IlvD-like
Family: IlvD/EDD C-terminal domain-like

Phyre2
1

c2eeyA_
2

c2ideE_
3

d1ekra_
4

c2eknC_
5

c2ohdB_
6

c1sfeA_
7

d1oh4a_
8

c3ct5A_
9

d2cqaa1
10

d1bu2a2
11

c2b5lC_
12

d1vqon1
13

c3pn1A_
14

c2p0xA_
15

c3bdqB_
16

c2xuvB_
17

d1ikta_
18

d2f1fa2
19

c2xskA_
20

d2gp4a1
21



22



23



24



25



26



27



28



29



30



31



32



33






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2eeyA_



100.0 50 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis;
PDBTitle: structure of gk0241 protein from geobacillus kaustophilus
2c2ideE_



100.0 54 PDB header:biosynthetic protein
Chain: E: PDB Molecule:molybdenum cofactor biosynthesis protein c;
PDBTitle: crystal structure of the molybdenum cofactor biosynthesis protein c2 (ttha1789) from thermus theromophilus hb8
3d1ekra_



100.0 100 Fold:Ferredoxin-like
Superfamily:Molybdenum cofactor biosynthesis protein C, MoaC
Family:Molybdenum cofactor biosynthesis protein C, MoaC
4c2eknC_



100.0 41 PDB header:biosynthetic protein
Chain: C: PDB Molecule:probable molybdenum cofactor biosynthesis protein c;
PDBTitle: structure of ph1811 protein from pyrococcus horikoshii
5c2ohdB_



100.0 45 PDB header:biosynthetic protein
Chain: B: PDB Molecule:probable molybdenum cofactor biosynthesis protein c;
PDBTitle: crystal structure of hypothetical molybdenum cofactor biosynthesis2 protein c from sulfolobus tokodaii
6c1sfeA_



37.0 15 PDB header:dna-binding protein
Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase;
PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli
7d1oh4a_



33.7 43 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 27 carbohydrate binding module, CBM27
8c3ct5A_



31.7 30 PDB header:hydrolase
Chain: A: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail
9d2cqaa1



22.5 15 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TIP49 domain
10d1bu2a2



14.8 47 Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
11c2b5lC_



13.0 31 PDB header:protein binding/viral protein
Chain: C: PDB Molecule:nonstructural protein v;
PDBTitle: crystal structure of ddb1 in complex with simian virus 5 v2 protein
12d1vqon1



11.1 15 Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
13c3pn1A_



10.3 19 PDB header:ligase/ligase inhibitor
Chain: A: PDB Molecule:dna ligase;
PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo
14c2p0xA_



9.2 75 PDB header:de novo protein
Chain: A: PDB Molecule:abiotic atp-binding, folding optimized protein;
PDBTitle: solution structure of a non-biological atp-binding protein
15c3bdqB_



9.0 24 PDB header:lipid transport
Chain: B: PDB Molecule:sterol carrier protein 2-like 2;
PDBTitle: room tempreture crystal structure of sterol carrier protein-2 2 like-2
16c2xuvB_



8.8 22 PDB header:unknown function
Chain: B: PDB Molecule:hdeb;
PDBTitle: the structure of hdeb
17d1ikta_



8.1 14 Fold:SCP-like
Superfamily:SCP-like
Family:Sterol carrier protein, SCP
18d2f1fa2



7.9 20 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
19c2xskA_



7.7 28 PDB header:chaperone
Chain: A: PDB Molecule:csgc;
PDBTitle: e. coli curli protein csgc - secys
20d2gp4a1



7.6 25 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:IlvD/EDD C-terminal domain-like
21d2bbya_



not modelled 7.1 4 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding domain from rap30
22c2ketA_



not modelled 7.1 45 PDB header:antibiotic
Chain: A: PDB Molecule:cathelicidin-6;
PDBTitle: solution structure of bmap-27
23c2kc5A_



not modelled 7.0 13 PDB header:chaperone
Chain: A: PDB Molecule:hydrogenase-2 operon protein hybe;
PDBTitle: solution structure of hybe from escherichia coli
24d1pz4a_



not modelled 6.9 23 Fold:SCP-like
Superfamily:SCP-like
Family:Sterol carrier protein, SCP
25c1z4hA_



not modelled 6.9 32 PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
26d1vlfn1



not modelled 6.8 29 Fold:Prealbumin-like
Superfamily:Cna protein B-type domain
Family:Cna protein B-type domain
27c2p09A_



not modelled 6.7 75 PDB header:de novo protein
Chain: A: PDB Molecule:a non-biological atp binding protein with two mutations
PDBTitle: structural insights into the evolution of a non-biological protein
28d1wzua1



not modelled 6.4 38 Fold:NadA-like
Superfamily:NadA-like
Family:NadA-like
29d1uufa2



not modelled 6.1 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
30d4bcla_



not modelled 5.9 23 Fold:Bacteriochlorophyll A protein
Superfamily:Bacteriochlorophyll A protein
Family:Bacteriochlorophyll A protein
31c2gp4A_



not modelled 5.8 25 PDB header:lyase
Chain: A: PDB Molecule:6-phosphogluconate dehydratase;
PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis
32d1juva_



not modelled 5.7 9 Fold:Dihydrofolate reductase-like
Superfamily:Dihydrofolate reductase-like
Family:Dihydrofolate reductases
33d1cq3a_



not modelled 5.2 83 Fold:Soluble secreted chemokine inhibitor, VCCI
Superfamily:Soluble secreted chemokine inhibitor, VCCI
Family:Soluble secreted chemokine inhibitor, VCCI

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0