Email l.a.kelley@imperial.ac.uk Description P77437 Date Thu Jan 5 12:29:18 GMT 2012 Unique Job ID df3a97ad84902093

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3rkoL_ 100.0 26 PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 2 c3rkoM_ 100.0 21 PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 3 c3rkoN_ 100.0 23 PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 4 c3rkoK_ 40.9 17 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 5 c2l3iA_ 34.4 58 PDB header:antimicrobial protein Chain: A: PDB Molecule:aoxki4a, antimicrobial peptide in spider venom; PDBTitle: oxki4a, spider derived antimicrobial peptide 6 d1o8bb1 22.7 21 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 7 c2kncA_ 20.6 16 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 8 d1a6qa1 20.2 20 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 9 d1s1qa_ 15.5 31 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 10 d2gf4a1 12.6 10 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Vng1086c-like Family:Vng1086c-like 11 c3u7jA_ 12.4 20 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis 12 c3arcl_ 12.3 13 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 13 c3bz1L_ 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 14 d2axtl1 11.8 13 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 15 c3a0hL_ 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 16 c3arcL_ 11.8 13 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 17 c2axtl_ 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 18 c2axtL_ 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 19 c1s5ll_ 11.8 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 20 c1s5lL_ 11.8 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 21 c3prqL_ not modelled 11.8 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 22 c3kziL_ not modelled 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 23 c3prrL_ not modelled 11.8 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 24 c3a0bl_ not modelled 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 25 c3bz2L_ not modelled 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 26 c3a0bL_ not modelled 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 27 c3a0hl_ not modelled 11.8 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 28 d1xmec1 not modelled 11.4 15 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 29 c3na2C_ not modelled 10.7 58 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from mine drainage2 metagenome leptospirillum rubarum 30 c3c25A_ not modelled 10.6 67 PDB header:hydrolase/dna Chain: A: PDB Molecule:noti restriction endonuclease; PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna 31 d1n9wa2 not modelled 10.0 63 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 32 c1n9wA_ not modelled 9.9 63 PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus 33 c3rkoF_ not modelled 9.8 13 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 34 c3bjuB_ not modelled 9.3 38 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 35 d1j4na_ not modelled 8.9 9 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 36 c1b8aB_ not modelled 8.6 63 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 37 d3d37a2 not modelled 8.3 57 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 38 d1bcce2 not modelled 8.3 5 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 39 c1wydB_ not modelled 8.3 63 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 40 c1x55A_ not modelled 8.1 38 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 41 c2k1aA_ not modelled 8.1 16 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 42 c1e22A_ not modelled 8.1 38 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 43 c2xgtB_ not modelled 8.0 25 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 44 c3r24A_ not modelled 7.9 33 PDB header:transferase, viral protein Chain: A: PDB Molecule:2'-o-methyl transferase; PDBTitle: crystal structure of nsp10/nsp16 complex of sars coronavirus" if2 possible 45 c2ks1B_ not modelled 7.8 18 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 46 c3mesB_ not modelled 7.7 31 PDB header:transferase Chain: B: PDB Molecule:choline kinase; PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030 47 c1asyA_ not modelled 7.6 38 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 48 c2kwtA_ not modelled 7.5 29 PDB header:viral protein Chain: A: PDB Molecule:protease ns2-3; PDBTitle: solution structure of ns2 [27-59] 49 c1ceuA_ not modelled 7.4 25 PDB header:viral protein Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein 50 c2p04B_ not modelled 7.3 23 PDB header:transferase Chain: B: PDB Molecule:signal transduction histidine kinase; PDBTitle: 2.1 ang structure of the dimerized pas domain of signal transduction2 histidine kinase from nostoc punctiforme pcc 73102 with homology to3 the h-noxa/h-noba domain of the soluble guanylyl cyclase 51 d1unca_ not modelled 7.2 21 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 52 c2re3A_ not modelled 7.2 45 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution 53 d1yu8x1 not modelled 7.1 22 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 54 d1ppje2 not modelled 7.0 5 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 55 c3e9hB_ not modelled 7.0 50 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 56 c1efwA_ not modelled 7.0 38 PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli 57 d1r6ra_ not modelled 7.0 19 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 58 c1r6rA_ not modelled 7.0 19 PDB header:viral protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold 59 c3m4qA_ not modelled 6.9 25 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 60 d1unda_ not modelled 6.9 22 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 61 c2ejbA_ not modelled 6.5 20 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus 62 c2voyK_ not modelled 6.5 23 PDB header:hydrolase Chain: K: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 63 d2axti1 not modelled 6.4 13 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 64 d1jhda1 not modelled 6.2 11 Fold:PUA domain-like Superfamily:PUA domain-like Family:ATP sulfurylase N-terminal domain 65 d1oqwa_ not modelled 6.2 20 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 66 d2f05a1 not modelled 6.2 30 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 67 d1ca1a2 not modelled 6.2 11 Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Alpha-toxin, C-terminal domain 68 c3kv0A_ not modelled 6.2 57 PDB header:transport protein Chain: A: PDB Molecule:het-c2; PDBTitle: crystal structure of het-c2: a fungal glycolipid transfer protein2 (gltp) 69 d1swxa_ not modelled 6.1 30 Fold:Glycolipid transfer protein, GLTP Superfamily:Glycolipid transfer protein, GLTP Family:Glycolipid transfer protein, GLTP 70 d1l0wa3 not modelled 6.1 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 71 c3rpfC_ not modelled 5.9 33 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 72 c2pjmA_ not modelled 5.9 25 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 73 d1c0aa3 not modelled 5.9 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 74 c1eqrC_ not modelled 5.8 38 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 75 c3jzdA_ not modelled 5.7 11 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution 76 d1qzpa_ not modelled 5.7 7 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 77 d1eova2 not modelled 5.7 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 78 c2jwaA_ not modelled 5.7 21 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 79 d1b8aa2 not modelled 5.7 63 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 80 d1x6va1 not modelled 5.7 33 Fold:PUA domain-like Superfamily:PUA domain-like Family:ATP sulfurylase N-terminal domain 81 d1zvpa1 not modelled 5.6 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 82 c3i7fA_ not modelled 5.6 25 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 83 c3bwrC_ not modelled 5.6 38 PDB header:viral protein Chain: C: PDB Molecule:capsid protein vp1; PDBTitle: sv40 vp1 pentamer in complex with gm1 oligosaccharide 84 c2k6nA_ not modelled 5.6 22 PDB header:structural protein Chain: A: PDB Molecule:supervillin; PDBTitle: solution structure of human supervillin headpiece, minimized2 average 85 d1uzxa_ not modelled 5.6 27 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 86 c2l3xA_ not modelled 5.6 14 PDB header:protein binding Chain: A: PDB Molecule:ablim2 protein; PDBTitle: villin head piece domain of human ablim2 87 c2i3fA_ not modelled 5.6 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glycolipid transfer-like protein; PDBTitle: crystal structure of a glycolipid transfer-like protein2 from galdieria sulphuraria 88 d1yu5x1 not modelled 5.5 22 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 89 c2uwjG_ not modelled 5.5 42 PDB header:chaperone Chain: G: PDB Molecule:type iii export protein pscg; PDBTitle: structure of the heterotrimeric complex which regulates2 type iii secretion needle formation 90 c3pisA_ not modelled 5.4 38 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kazal-type serine protease inhibitor spi-1; PDBTitle: crystal structure of carcinoscorpius rotundicauda serine protease2 inhibitor domain 1 91 d1sva1_ not modelled 5.4 38 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group I dsDNA viruses Family:Papovaviridae-like VP 92 d1ujsa_ not modelled 5.4 11 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 93 c1v55B_ not modelled 5.3 11 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state 94 d1sbza_ not modelled 5.3 30 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 95 c3mk7F_ not modelled 5.1 13 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 96 c3sokB_ not modelled 5.1 24 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 97 d2axte1 not modelled 5.1 26 Fold:Single transmembrane helix Superfamily:Cytochrome b559 subunits Family:Cytochrome b559 subunits 98 c1h2sB_ not modelled 5.0 27 PDB header:membrane protein Chain: B: PDB Molecule:sensory rhodopsin ii transducer; PDBTitle: molecular basis of transmenbrane signalling by sensory2 rhodopsin ii-transducer complex