Secondary structure and disorder prediction

1

.

.

.

.

.

.

.

.

10

.

.

.

.

.

.

.

.

.

20

.

.

.

.

.

.

.

.

.

30

.

.

.

.

.

.

.

.

.

40

.

.

.

.

.

.

.

.

.

50

.

.

.

.

.

.

.

.

.

60

Sequence

M

T

L

D

L

P

R

R

F

P

W

P

T

L

L

S

V

C

I

H

G

A

V

V

A

G

L

L

Y

T

S

V

H

Q

V

I

E

L

P

A

P

A

Q

P

I

S

V

T

M

V

T

P

A

D

L

E

P

P

Q

A

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

.

.

.

.

.

.

.

.

.

70

.

.

.

.

.

.

.

.

.

80

.

.

.

.

.

.

.

.

.

90

.

.

.

.

.

.

.

.

.

100

.

.

.

.

.

.

.

.

.

110

.

.

.

.

.

.

.

.

.

120

Sequence

V

Q

P

P

P

E

P

V

V

E

P

E

P

E

P

E

P

I

P

E

P

P

K

E

A

P

V

V

I

E

K

P

K

P

K

P

K

P

K

P

K

P

V

K

K

V

Q

E

Q

P

K

R

D

V

K

P

V

E

S

R

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

.

.

.

.

.

.

.

.

.

130

.

.

.

.

.

.

.

.

.

140

.

.

.

.

.

.

.

.

.

150

.

.

.

.

.

.

.

.

.

160

.

.

.

.

.

.

.

.

.

170

.

.

.

.

.

.

.

.

.

180

Sequence

P

A

S

P

F

E

N

T

A

P

A

R

L

T

S

S

T

A

T

A

A

T

S

K

P

V

T

S

V

A

S

G

P

R

A

L

S

R

N

Q

P

Q

Y

P

A

R

A

Q

A

L

R

I

E

G

Q

V

K

V

K

F

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

.

.

.

.

.

.

.

.

.

190

.

.

.

.

.

.

.

.

.

200

.

.

.

.

.

.

.

.

.

210

.

.

.

.

.

.

.

.

.

220

.

.

.

.

.

.

.

.

.

230

.

.

.

.

.

.

.

.

.

Sequence

D

V

T

P

D

G

R

V

D

N

V

Q

I

L

S

A

K

P

A

N

M

F

E

R

E

V

K

N

A

M

R

R

W

R

Y

E

P

G

K

P

G

S

G

I

V

V

N

I

L

F

K

I

N

G

T

T

E

I

Q

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1xx3 chain A Region: 156 - 239 Aligned: 84 Modelled: 84 Confidence: 99.8% Identity: 100% PDB header:transport protein Chain: A: PDB Molecule:tonb protein; PDBTitle: solution structure of escherichia coli tonb-ctd Phyre2 PDB 1u07 chain A Region: 156 - 239 Aligned: 84 Modelled: 84 Confidence: 99.8% Identity: 100% Fold: TolA/TonB C-terminal domain Superfamily: TolA/TonB C-terminal domain Family: TonB Phyre2 PDB 2grx chain C Region: 158 - 235 Aligned: 78 Modelled: 78 Confidence: 99.8% Identity: 100% PDB header:metal transport Chain: C: PDB Molecule:protein tonb; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome Phyre2 PDB 2gsk chain B domain 1 Region: 156 - 233 Aligned: 78 Modelled: 78 Confidence: 99.8% Identity: 100% Fold: TolA/TonB C-terminal domain Superfamily: TolA/TonB C-terminal domain Family: TonB Phyre2 PDB 1ihr chain A Region: 166 - 236 Aligned: 71 Modelled: 71 Confidence: 99.7% Identity: 100% Fold: TolA/TonB C-terminal domain Superfamily: TolA/TonB C-terminal domain Family: TonB Phyre2 PDB 2k9k chain A Region: 137 - 233 Aligned: 97 Modelled: 97 Confidence: 99.7% Identity: 31% PDB header:metal transport Chain: A: PDB Molecule:tonb2; PDBTitle: molecular characterization of the tonb2 protein from vibrio2 anguillarum Phyre2 PDB 1lr0 chain A Region: 142 - 231 Aligned: 87 Modelled: 90 Confidence: 99.4% Identity: 22% Fold: TolA/TonB C-terminal domain Superfamily: TolA/TonB C-terminal domain Family: TolA Phyre2 PDB 2x9a chain B Region: 142 - 231 Aligned: 84 Modelled: 90 Confidence: 99.2% Identity: 11% PDB header:viral protein Chain: B: PDB Molecule:membrane spanning protein, required for outer membrane PDBTitle: crystal structure of g3p from phage if1 in complex with its2 coreceptor, the c-terminal domain of tola Phyre2 PDB 1tol chain A domain 2 Region: 142 - 231 Aligned: 84 Modelled: 90 Confidence: 99.1% Identity: 10% Fold: TolA/TonB C-terminal domain Superfamily: TolA/TonB C-terminal domain Family: TolA Phyre2 PDB 1tol chain A Region: 137 - 231 Aligned: 91 Modelled: 95 Confidence: 98.7% Identity: 10% PDB header:viral protein Chain: A: PDB Molecule:protein (fusion protein consisting of minor coat PDBTitle: fusion of n-terminal domain of the minor coat protein from2 gene iii in phage m13, and c-terminal domain of e. coli3 protein-tola Phyre2 PDB 1ybx chain A Region: 178 - 213 Aligned: 36 Modelled: 36 Confidence: 64.2% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum Phyre2 PDB 3onr chain I Region: 191 - 238 Aligned: 47 Modelled: 48 Confidence: 60.8% Identity: 21% PDB header:metal binding protein Chain: I: PDB Molecule:protein transport protein sece2; PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site Phyre2 PDB 2h66 chain G Region: 179 - 214 Aligned: 35 Modelled: 36 Confidence: 60.0% Identity: 9% PDB header:structural genomics/oxidoreductase Chain: G: PDB Molecule:pv-pf14_0368; PDBTitle: the crystal structure of plasmodium vivax 2-cys2 peroxiredoxin Phyre2 PDB 3keb chain B Region: 179 - 212 Aligned: 34 Modelled: 34 Confidence: 57.6% Identity: 6% PDB header:oxidoreductase Chain: B: PDB Molecule:probable thiol peroxidase; PDBTitle: thiol peroxidase from chromobacterium violaceum Phyre2 PDB 1j8b chain A Region: 178 - 213 Aligned: 36 Modelled: 36 Confidence: 57.6% Identity: 17% Fold: YbaB-like Superfamily: YbaB-like Family: YbaB-like Phyre2 PDB 1pug chain A Region: 178 - 213 Aligned: 36 Modelled: 36 Confidence: 52.2% Identity: 22% Fold: YbaB-like Superfamily: YbaB-like Family: YbaB-like Phyre2 PDB 2cv4 chain A domain 1 Region: 179 - 215 Aligned: 36 Modelled: 37 Confidence: 50.7% Identity: 11% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 3drn chain B Region: 179 - 214 Aligned: 35 Modelled: 36 Confidence: 47.4% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:peroxiredoxin, bacterioferritin comigratory protein PDBTitle: the crystal structure of bcp1 from sulfolobus sulfataricus Phyre2 PDB 2ux9 chain A domain 1 Region: 186 - 214 Aligned: 28 Modelled: 29 Confidence: 45.5% Identity: 25% Fold: Dodecin subunit-like Superfamily: Dodecin-like Family: Dodecin-like Phyre2 PDB 1we0 chain A domain 1 Region: 179 - 222 Aligned: 43 Modelled: 44 Confidence: 43.6% Identity: 21% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 1 c1xx3A_ 2 d1u07a_ 3 c2grxC_ 4 d2gskb1 5 d1ihra_ 6 c2k9kA_ 7 d1lr0a_ 8 c2x9aB_ 9 d1tola2 10 c1tolA_ 11 c1ybxA_ 12 c3onrI_ 13 c2h66G_ 14 c3kebB_ 15 d1j8ba_ 16 d1puga_ 17 d2cv4a1 18 c3drnB_ 19 d2ux9a1 20 d1we0a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1xx3A_ 99.8 100 PDB header:transport protein Chain: A: PDB Molecule:tonb protein; PDBTitle: solution structure of escherichia coli tonb-ctd 2 d1u07a_ 99.8 100 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 3 c2grxC_ 99.8 100 PDB header:metal transport Chain: C: PDB Molecule:protein tonb; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome 4 d2gskb1 99.8 100 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 5 d1ihra_ 99.7 100 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 6 c2k9kA_ 99.7 31 PDB header:metal transport Chain: A: PDB Molecule:tonb2; PDBTitle: molecular characterization of the tonb2 protein from vibrio2 anguillarum 7 d1lr0a_ 99.4 22 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TolA 8 c2x9aB_ 99.2 11 PDB header:viral protein Chain: B: PDB Molecule:membrane spanning protein, required for outer membrane PDBTitle: crystal structure of g3p from phage if1 in complex with its2 coreceptor, the c-terminal domain of tola 9 d1tola2 99.1 10 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TolA 10 c1tolA_ 98.7 10 PDB header:viral protein Chain: A: PDB Molecule:protein (fusion protein consisting of minor coat PDBTitle: fusion of n-terminal domain of the minor coat protein from2 gene iii in phage m13, and c-terminal domain of e. coli3 protein-tola 11 c1ybxA_ 64.2 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum 12 c3onrI_ 60.8 21 PDB header:metal binding protein Chain: I: PDB Molecule:protein transport protein sece2; PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site 13 c2h66G_ 60.0 9 PDB header:structural genomics/oxidoreductase Chain: G: PDB Molecule:pv-pf14_0368; PDBTitle: the crystal structure of plasmodium vivax 2-cys2 peroxiredoxin 14 c3kebB_ 57.6 6 PDB header:oxidoreductase Chain: B: PDB Molecule:probable thiol peroxidase; PDBTitle: thiol peroxidase from chromobacterium violaceum 15 d1j8ba_ 57.6 17 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 16 d1puga_ 52.2 22 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 17 d2cv4a1 50.7 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 18 c3drnB_ 47.4 20 PDB header:oxidoreductase Chain: B: PDB Molecule:peroxiredoxin, bacterioferritin comigratory protein PDBTitle: the crystal structure of bcp1 from sulfolobus sulfataricus 19 d2ux9a1 45.5 25 Fold:Dodecin subunit-like Superfamily:Dodecin-like Family:Dodecin-like 20 d1we0a1 43.6 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 21 d1zyea1 not modelled 42.8 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 22 d2h01a1 not modelled 41.6 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 23 c2vxaL_ not modelled 40.3 32 PDB header:flavoprotein Chain: L: PDB Molecule:dodecin; PDBTitle: h.halophila dodecin in complex with riboflavin 24 d1e2ya_ not modelled 38.3 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 25 c2bmxB_ not modelled 36.4 17 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxidase c; PDBTitle: mycobacterium tuberculosis ahpc 26 d1qq2a_ not modelled 33.8 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 27 d1qmva_ not modelled 33.5 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 28 c3hd7A_ not modelled 31.6 15 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 29 d1n8ja_ not modelled 31.4 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 30 c3oqtP_ not modelled 31.1 14 PDB header:flavoprotein Chain: P: PDB Molecule:rv1498a protein; PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis 31 d1uula_ not modelled 30.9 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 32 d1m98a2 not modelled 30.5 23 Fold:Cystatin-like Superfamily:NTF2-like Family:Orange carotenoid protein, C-terminal domain 33 c3dtdI_ not modelled 29.6 22 PDB header:structural genomics, unknown function Chain: I: PDB Molecule:invasion-associated protein b; PDBTitle: crystal structure of invasion associated protein b from bartonella2 henselae 34 d1psqa_ not modelled 29.1 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 35 d1xvqa_ not modelled 29.0 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 36 c2ii1A_ not modelled 28.7 17 PDB header:hydrolase Chain: A: PDB Molecule:acetamidase; PDBTitle: crystal structure of acetamidase (10172637) from bacillus halodurans2 at 1.95 a resolution 37 c2kzxA_ not modelled 28.7 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of a3dht5 from clostridium thermocellum,2 northeast structural genomics consortium target cmr116 38 c2yzhD_ not modelled 26.1 24 PDB header:oxidoreductase Chain: D: PDB Molecule:probable thiol peroxidase; PDBTitle: crystal structure of peroxiredoxin-like protein from aquifex aeolicus 39 c2xpdC_ not modelled 25.3 6 PDB header:oxidoreductase Chain: C: PDB Molecule:thiol peroxidase; PDBTitle: reduced thiol peroxidase (tpx) from yersinia pseudotuberculosis 40 d1ijda_ not modelled 24.5 21 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 41 d2cx4a1 not modelled 23.6 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 42 d1nkza_ not modelled 22.1 17 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 43 d2bmxa1 not modelled 21.9 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 44 d2vnud4 not modelled 21.3 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RNB domain-like 45 c2c0dA_ not modelled 20.9 11 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin peroxidase 2; PDBTitle: structure of the mitochondrial 2-cys peroxiredoxin from2 plasmodium falciparum 46 d1zofa1 not modelled 20.7 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 47 c3o6uB_ not modelled 20.4 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein cpe2226; PDBTitle: crystal structure of cpe2226 protein from clostridium perfringens.2 northeast structural genomics consortium target cpr195 48 c2r7fA_ not modelled 18.9 27 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease ii family protein; PDBTitle: crystal structure of ribonuclease ii family protein from deinococcus2 radiodurans, hexagonal crystal form. northeast structural genomics3 target drr63 49 d2r7da2 not modelled 18.4 27 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RNB domain-like 50 c3lwxA_ not modelled 18.1 9 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, PDBTitle: crystal structure of na(+)-translocating nadh-quinone2 reductase subunit c (yp_001302508.1) from parabacteroides3 distasonis atcc 8503 at 1.10 a resolution 51 d1knga_ not modelled 18.0 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 52 c1zyeL_ not modelled 17.9 15 PDB header:oxidoreductase Chain: L: PDB Molecule:thioredoxin-dependent peroxide reductase; PDBTitle: crystal strucutre analysis of bovine mitochondrial peroxiredoxin iii 53 c2egtA_ not modelled 15.5 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein aq_1549; PDBTitle: crystal structure of hypothetical protein (aq1549) from aquifex2 aeolicus 54 c2jszA_ not modelled 14.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:probable thiol peroxidase; PDBTitle: solution structure of tpx in the reduced state 55 d1pugb_ not modelled 13.8 22 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 56 c3eytA_ not modelled 13.6 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173 57 c1h2aL_ not modelled 12.8 30 PDB header:oxidoreductase Chain: L: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 58 d1iwla_ not modelled 12.7 10 Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors Family:Outer-membrane lipoproteins carrier protein LolA 59 c2ywnA_ not modelled 12.3 7 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin-like protein; PDBTitle: crystal structure of peroxiredoxin-like protein from2 sulfolobus tokodaii 60 c1zofB_ not modelled 11.1 12 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxide-reductase; PDBTitle: crystal structure of alkyl hydroperoxide-reductase (ahpc)2 from helicobacter pylori 61 d2idla1 not modelled 11.0 14 Fold:eIF1-like Superfamily:TM1457-like Family:TM1457-like 62 d1xvwa1 not modelled 10.9 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 63 d2zcta1 not modelled 10.7 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 64 d1wuil1 not modelled 10.5 31 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 65 c3mjjD_ not modelled 10.3 19 PDB header:hydrolase Chain: D: PDB Molecule:predicted acetamidase/formamidase; PDBTitle: crystal structure analysis of a recombinant predicted2 acetamidase/formamidase from the thermophile thermoanaerobacter3 tengcongensis 66 c2b7kD_ not modelled 10.1 6 PDB header:metal binding protein Chain: D: PDB Molecule:sco1 protein; PDBTitle: crystal structure of yeast sco1 67 d2ix0a4 not modelled 9.6 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RNB domain-like 68 d1xcca_ not modelled 9.5 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 69 c3myrB_ not modelled 9.2 18 PDB header:oxidoreductase Chain: B: PDB Molecule:nickel-dependent hydrogenase large subunit; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 70 c2fug4_ not modelled 8.9 8 PDB header:oxidoreductase Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 71 d2fug41 not modelled 8.9 8 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nqo4-like 72 c3gknA_ not modelled 8.6 26 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures 73 c1vqzA_ not modelled 8.6 21 PDB header:ligase Chain: A: PDB Molecule:lipoate-protein ligase, putative; PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution 74 c2vnuD_ not modelled 8.2 14 PDB header:hydrolase/rna Chain: D: PDB Molecule:exosome complex exonuclease rrp44; PDBTitle: crystal structure of sc rrp44 75 c2kl8A_ not modelled 8.1 22 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 76 c3kh7A_ not modelled 7.9 6 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of the periplasmic soluble domain of reduced ccmg2 from pseudomonas aeruginosa 77 c3razA_ not modelled 7.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-related protein; PDBTitle: the crystal structure of thioredoxin-related protein from neisseria2 meningitidis serogroup b 78 d2b7ka1 not modelled 7.7 6 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 79 d1yexa1 not modelled 7.6 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 80 c2kncA_ not modelled 7.4 19 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 81 d1qxha_ not modelled 7.4 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 82 d1xrda1 not modelled 7.2 16 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 83 c2nr1A_ not modelled 7.2 39 PDB header:receptor Chain: A: PDB Molecule:nr1 m2; PDBTitle: transmembrane segment 2 of nmda receptor nr1, nmr, 102 structures 84 d1rjlc_ not modelled 7.1 31 Fold:open-sided beta-meander Superfamily:Outer surface protein Family:Outer surface protein 85 d1yq9h1 not modelled 6.9 30 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 86 c2v1mA_ not modelled 6.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase; PDBTitle: crystal structure of schistosoma mansoni glutathione2 peroxidase 87 d1q98a_ not modelled 6.1 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 88 d1frfl_ not modelled 6.1 30 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 89 c3f8xD_ not modelled 6.0 7 PDB header:isomerase Chain: D: PDB Molecule:putative delta-5-3-ketosteroid isomerase; PDBTitle: crystal structure of a putative delta-5-3-ketosteroid isomerase2 (eca2236) from pectobacterium atrosepticum scri1043 at 1.55 a3 resolution 90 d1e3db_ not modelled 5.8 25 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 91 c2boyC_ not modelled 5.7 12 PDB header:oxidoreductase Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase; PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from2 rhodococcus opacus 1cp 92 c3fljA_ not modelled 5.3 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein conserved in bacteria with a PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 with a cystatin-like fold (yp_168589.1) from silicibacter pomeroyi3 dss-3 at 2.00 a resolution 93 c2qtsA_ not modelled 5.1 8 PDB header:membrane protein Chain: A: PDB Molecule:acid-sensing ion channel; PDBTitle: structure of an acid-sensing ion channel 1 at 1.9 a resolution and low2 ph 94 c2wpnB_ not modelled 5.0 33 PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 95 c2rliA_ not modelled 5.0 19 PDB header:metal transport Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial; PDBTitle: solution structure of cu(i) human sco2 96 d3bzka5 not modelled 5.0 5 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0