Email l.a.kelley@imperial.ac.uk Description P0A6Z6 Date Thu Jan 5 11:04:18 GMT 2012 Unique Job ID dc5a952b7c58d9a0

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ca9B_ 100.0 29 PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation 2 c2bj3D_ 100.0 32 PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo 3 c1q5vB_ 100.0 100 PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr 4 d1q5ya_ 100.0 100 Fold:Ferredoxin-like Superfamily:ACT-like Family:Nickel responsive regulator NikR, C-terminal domain 5 d2bj7a2 100.0 29 Fold:Ferredoxin-like Superfamily:ACT-like Family:Nickel responsive regulator NikR, C-terminal domain 6 c2y3yC_ 100.0 29 PDB header:transcription Chain: C: PDB Molecule:putative nickel-responsive regulator; PDBTitle: holo-ni(ii) hpnikr is a symmetric tetramer containing four2 canonic square-planar ni(ii) ions at physiological ph 7 d2bj7a1 99.6 35 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 8 d2hzaa1 99.6 98 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 9 d2hzab1 99.5 98 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 10 c2k5jB_ 97.8 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 11 c3kxeD_ 97.3 31 PDB header:protein binding Chain: D: PDB Molecule:antitoxin protein pard-1; PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex 12 d2nzca1 97.0 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:TM1266-like 13 d2cpga_ 93.2 32 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 14 c2k29A_ 91.5 26 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 15 c2kelB_ 90.2 20 PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 16 c3h87D_ 77.8 44 PDB header:toxin/antitoxin Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis 17 d1y9ba1 64.2 16 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:VCA0319-like 18 c2k9iB_ 59.3 12 PDB header:dna binding protein Chain: B: PDB Molecule:plasmid prn1, complete sequence; PDBTitle: nmr structure of plasmid copy control protein orf56 from2 sulfolobus islandicus 19 c3gxqB_ 55.8 31 PDB header:dna binding protein/dna Chain: B: PDB Molecule:putative regulator of transfer genes arta; PDBTitle: structure of arta and dna complex 20 d1p94a_ 55.1 14 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 21 d1ygya3 not modelled 36.6 8 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 22 d1vioa2 not modelled 34.4 29 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 23 c2rbfB_ not modelled 32.3 26 PDB header:oxidoreductase/dna Chain: B: PDB Molecule:bifunctional protein puta; PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2) 24 d2cyya2 not modelled 31.9 15 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 25 c2knjA_ not modelled 31.7 21 PDB header:antimicrobial protein Chain: A: PDB Molecule:microplusin preprotein; PDBTitle: nmr structure of microplusin a antimicrobial peptide from2 rhipicephalus (boophilus) microplus 26 c2e1cA_ not modelled 25.9 15 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 27 d1c06a_ not modelled 25.2 36 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 28 d1sc6a3 not modelled 24.9 7 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 29 c2vixB_ not modelled 24.5 11 PDB header:transport protein Chain: B: PDB Molecule:protein mxic; PDBTitle: methylated shigella flexneri mxic 30 d1l3la1 not modelled 24.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 31 d1p9ka_ not modelled 23.6 22 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 32 c2exuA_ not modelled 23.0 3 PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain 33 c2q2kA_ not modelled 21.1 36 PDB header:dna binding protein/dna Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of nucleic-acid binding protein 34 d1u8sa1 not modelled 20.7 3 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 35 c3m8jA_ not modelled 20.2 15 PDB header:transcription Chain: A: PDB Molecule:focb protein; PDBTitle: crystal structure of e.coli focb at 1.4 a resolution 36 c2qhoF_ not modelled 19.2 27 PDB header:protein binding/ligase Chain: F: PDB Molecule:e3 ubiquitin-protein ligase edd1; PDBTitle: crystal structure of the uba domain from edd ubiquitin2 ligase in complex with ubiquitin 37 c2kpoA_ not modelled 17.3 22 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x2 fold protein; PDBTitle: solution nmr structure of de novo designed rossmann 2x2 fold protein,2 northeast structural genomics consortium target or16 38 c1u8sB_ not modelled 16.6 5 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 39 c2cqjA_ not modelled 16.2 13 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 40 c2nyiB_ not modelled 16.1 5 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria 41 c2rnjA_ not modelled 15.7 9 PDB header:transcription Chain: A: PDB Molecule:response regulator protein vrar; PDBTitle: nmr structure of the s. aureus vrar dna binding domain 42 c2k6lA_ not modelled 15.5 23 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the solution structure of xacb0070 from xanthonomas2 axonopodis pv citri reveals this new protein is a member of3 the rhh family of transcriptional repressors 43 d2gnoa1 not modelled 15.3 11 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 44 d1vhwa_ not modelled 15.0 22 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 45 d1xdia2 not modelled 14.5 25 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain 46 d2ac7a1 not modelled 14.5 19 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 47 d1f06a2 not modelled 14.5 32 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 48 c2x3dC_ not modelled 12.6 18 PDB header:unknown function Chain: C: PDB Molecule:sso6206; PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2 49 d1k9sa_ not modelled 12.5 22 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 50 c2krfB_ not modelled 12.5 16 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein coma; PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a 51 c3kk4B_ not modelled 12.4 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bp1543; PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i 52 c3mntA_ not modelled 11.8 21 PDB header:transferase Chain: A: PDB Molecule:leucine carboxyl methyltransferase 1; PDBTitle: crystal structure of human leucine carboxyl methyltransferase 1 53 c2y9jt_ not modelled 11.8 12 PDB header:protein transport Chain: T: PDB Molecule:protein prgh; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution 54 c2jpcA_ not modelled 11.5 7 PDB header:dna binding protein Chain: A: PDB Molecule:ssrb; PDBTitle: ssrb dna binding protein 55 c1zljE_ not modelled 11.3 12 PDB header:transcription Chain: E: PDB Molecule:dormancy survival regulator; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain 56 d1sxjd1 not modelled 10.9 10 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 57 c3b47A_ not modelled 10.5 23 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0582 58 d2nwua1 not modelled 10.5 30 Fold:RL5-like Superfamily:RL5-like Family:SSO1042-like 59 c1yj7A_ not modelled 9.9 14 PDB header:protein transport Chain: A: PDB Molecule:escj; PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj 60 d1uyla_ not modelled 9.7 17 Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Family:Heat shock protein 90, HSP90, N-terminal domain 61 c2fwyA_ not modelled 9.7 17 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein hsp 90-alpha; PDBTitle: structure of human hsp90-alpha bound to the potent water2 soluble inhibitor pu-h64 62 c1x3uA_ not modelled 9.6 6 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein fixj; PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot 63 c3ieiD_ not modelled 9.4 21 PDB header:transferase Chain: D: PDB Molecule:leucine carboxyl methyltransferase 1; PDBTitle: crystal structure of human leucine carboxylmethyltransferase-1 in2 complex with s-adenosyl homocysteine 64 d2qy9a1 not modelled 9.4 16 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 65 d1sr9a1 not modelled 9.3 17 Fold:RuvA C-terminal domain-like Superfamily:post-HMGL domain-like Family:DmpG/LeuA communication domain-like 66 d2raqa1 not modelled 9.3 18 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 67 c2hwyB_ not modelled 9.2 25 PDB header:rna binding protein Chain: B: PDB Molecule:protein smg5; PDBTitle: structure of pin domain of human smg5. 68 c2nysA_ not modelled 9.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:agr_c_3712p; PDBTitle: x-ray crystal structure of protein agr_c_3712 from2 agrobacterium tumefaciens. northeast structural genomics3 consortium target atr88. 69 d2nysa1 not modelled 9.2 18 Fold:SspB-like Superfamily:SspB-like Family:AGR C 3712p-like 70 c2kebA_ not modelled 9.2 19 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 71 c3dh3C_ not modelled 8.8 31 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 72 d1rjda_ not modelled 8.8 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Leucine carboxy methyltransferase Ppm1 73 d2cg4a2 not modelled 8.2 10 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 74 c3ggzH_ not modelled 8.1 36 PDB header:protein transport, endocytosis Chain: H: PDB Molecule:vacuolar protein-sorting-associated protein 46; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 75 c2e1aD_ not modelled 8.1 10 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 76 d1ebda3 not modelled 8.1 19 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain 77 c3b42B_ not modelled 8.0 22 PDB header:signaling protein Chain: B: PDB Molecule:methyl-accepting chemotaxis protein, putative; PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0935 78 d1lvla3 not modelled 8.0 25 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain 79 c3ggzF_ not modelled 8.0 36 PDB header:protein transport, endocytosis Chain: F: PDB Molecule:vacuolar protein-sorting-associated protein 46; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 80 c3ggzE_ not modelled 8.0 36 PDB header:protein transport, endocytosis Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 46; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 81 c3ggzG_ not modelled 7.9 36 PDB header:protein transport, endocytosis Chain: G: PDB Molecule:vacuolar protein-sorting-associated protein 46; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 82 d1mnta_ not modelled 7.8 14 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 83 d1qxpa2 not modelled 7.8 9 Fold:EF Hand-like Superfamily:EF-hand Family:Penta-EF-hand proteins 84 d3bpda1 not modelled 7.8 18 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 85 c2ia0A_ not modelled 7.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864; PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864) 86 c2c45F_ not modelled 7.5 36 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 87 d1zpva1 not modelled 7.4 8 Fold:Ferredoxin-like Superfamily:ACT-like Family:SP0238-like 88 d1cjya2 not modelled 7.3 13 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Lysophospholipase 89 d1nm2a2 not modelled 7.3 16 Fold:Ferredoxin-like Superfamily:Probable ACP-binding domain of malonyl-CoA ACP transacylase Family:Probable ACP-binding domain of malonyl-CoA ACP transacylase 90 d1odka_ not modelled 7.2 28 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 91 d2pzza1 not modelled 7.2 21 Fold:RL5-like Superfamily:RL5-like Family:SSO1042-like 92 c3m6jD_ not modelled 7.2 28 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum 93 c3h7hB_ not modelled 7.2 17 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt5; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 94 c2zwaA_ not modelled 7.1 48 PDB header:transferase Chain: A: PDB Molecule:leucine carboxyl methyltransferase 2; PDBTitle: crystal structure of trna wybutosine synthesizing enzyme2 tyw4 95 c2qasA_ not modelled 7.1 16 PDB header:hydrolase activator Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of caulobacter crescentus sspb ortholog 96 c2qazC_ not modelled 7.0 16 PDB header:hydrolase activator Chain: C: PDB Molecule:sspb protein; PDBTitle: structure of c. crescentus sspb ortholog 97 c3qv0A_ not modelled 7.0 38 PDB header:protein binding Chain: A: PDB Molecule:mitochondrial acidic protein mam33; PDBTitle: crystal structure of saccharomyces cerevisiae mam33 98 d1zrra1 not modelled 6.9 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 99 d2hs5a1 not modelled 6.9 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators