Email l.a.kelley@imperial.ac.uk Description P77377 Date Thu Jan 5 12:28:20 GMT 2012 Unique Job ID db7bf36f4d393ca3

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mkuA_ 99.9 14 PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter 2 d1pv7a_ 65.5 10 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 3 c3rkoN_ 16.9 14 PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 4 d1pw4a_ 12.4 7 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 5 d2iuba2 12.2 20 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 6 d1irxa1 11.8 21 Fold:An anticodon-binding domain of class I aminoacyl-tRNA synthetases Superfamily:An anticodon-binding domain of class I aminoacyl-tRNA synthetases Family:C-terminal domain of class I lysyl-tRNA synthetase 7 c2jwaA_ 11.2 17 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 8 c2pcoA_ 10.9 6 PDB header:toxin Chain: A: PDB Molecule:latarcin-1; PDBTitle: spatial structure and membrane permeabilization for2 latarcin-1, a spider antimicrobial peptide 9 c3iz5q_ 10.8 20 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 10 c3izrq_ 10.8 20 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 11 c2bbjB_ 10.5 14 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 12 c2okrC_ 10.0 30 PDB header:transferase Chain: C: PDB Molecule:map kinase-activated protein kinase 2; PDBTitle: crystal structure of the p38a-mapkap kinase 2 heterodimer 13 c2okrF_ 10.0 30 PDB header:transferase Chain: F: PDB Molecule:map kinase-activated protein kinase 2; PDBTitle: crystal structure of the p38a-mapkap kinase 2 heterodimer 14 c2yukA_ 9.9 15 PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog 15 c3nd0A_ 9.7 16 PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter 16 d1udxa3 9.3 16 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 17 c2jo8B_ 9.2 6 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase 4; PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1) 18 c1b9uA_ 9.0 29 PDB header:hydrolase Chain: A: PDB Molecule:protein (atp synthase); PDBTitle: membrane domain of the subunit b of the e.coli atp synthase 19 d1o82a_ 9.0 12 Fold:Saposin-like Superfamily:Bacteriocin AS-48 Family:Bacteriocin AS-48 20 c1p84D_ 8.9 9 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 21 c1r6rA_ not modelled 8.7 15 PDB header:viral protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold 22 d1r6ra_ not modelled 8.7 15 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 23 c1qvrB_ not modelled 8.7 23 PDB header:chaperone Chain: B: PDB Molecule:clpb protein; PDBTitle: crystal structure analysis of clpb 24 c3lmbA_ not modelled 8.4 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein olei01261 with unknown function2 from chlorobaculum tepidum tls 25 d2hkja2 not modelled 8.3 11 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 26 d1wwra1 not modelled 8.2 12 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 27 c2qdqA_ not modelled 8.2 9 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: crystal structure of the talin dimerisation domain 28 d2q7ra1 not modelled 8.1 19 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 29 d2fyuk1 not modelled 8.1 16 Fold:Single transmembrane helix Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 30 c2l16A_ not modelled 8.1 21 PDB header:protein transport Chain: A: PDB Molecule:sec-independent protein translocase protein tatad; PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles 31 d1sfka_ not modelled 8.0 17 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 32 c3trrA_ not modelled 8.0 8 PDB header:isomerase Chain: A: PDB Molecule:probable enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus 33 d3ehbb2 not modelled 8.0 9 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 34 c3cwbQ_ not modelled 8.0 6 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 35 c3u5en_ not modelled 8.0 11 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l15-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 resolution 36 c3izcq_ not modelled 8.0 11 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein rpl5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 37 c3izsq_ not modelled 8.0 11 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein rpl5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 38 c3u5in_ not modelled 8.0 11 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l15-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 39 d1j2jb_ not modelled 7.7 12 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 40 d2p7tc1 not modelled 7.7 17 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 41 c2ww9B_ not modelled 7.7 8 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sss1; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 42 c1m2zB_ not modelled 7.6 44 PDB header:hormone/hormone activator Chain: B: PDB Molecule:nuclear receptor coactivator 2; PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif 43 c3qnqD_ not modelled 7.6 16 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 44 d1l0nk_ not modelled 7.6 15 Fold:Single transmembrane helix Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 45 c3h81A_ not modelled 7.6 12 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase echa8; PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium2 tuberculosis 46 c3pxiB_ not modelled 7.5 23 PDB header:protein binding Chain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc 47 d1z3aa1 not modelled 7.5 11 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 48 d1e7la1 not modelled 7.4 24 Fold:LEM/SAP HeH motif Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains Family:Recombination endonuclease VII, C-terminal and dimerization domains 49 c1m2zE_ not modelled 7.4 44 PDB header:hormone/hormone activator Chain: E: PDB Molecule:nuclear receptor coactivator 2; PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif 50 c3dh4A_ not modelled 7.4 12 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 51 d1x6fa1 not modelled 7.3 32 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 52 d1xqoa_ not modelled 7.2 6 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:AgoG-like 53 c2xq2A_ not modelled 7.2 11 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 54 c1q2iA_ not modelled 7.1 10 PDB header:antitumor protein Chain: A: PDB Molecule:pnc27; PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells 55 c2z99A_ not modelled 7.1 13 PDB header:cell cycle Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of scpb from mycobacterium tuberculosis 56 c3fshC_ not modelled 7.1 12 PDB header:ligase Chain: C: PDB Molecule:autocrine motility factor receptor, isoform 2; PDBTitle: crystal structure of the ubiquitin conjugating enzyme2 ube2g2 bound to the g2br domain of ubiquitin ligase gp78 57 c3hinA_ not modelled 7.1 15 PDB header:lyase Chain: A: PDB Molecule:putative 3-hydroxybutyryl-coa dehydratase; PDBTitle: crystal structure of putative enoyl-coa hydratase from2 rhodopseudomonas palustris cga009 58 c1qcrD_ not modelled 7.0 6 PDB header: PDB COMPND: 59 c2ap7A_ not modelled 6.9 47 PDB header:antibiotic Chain: A: PDB Molecule:bombinin h2; PDBTitle: solution structure of bombinin h2 in dpc micelles 60 c3qooA_ not modelled 6.9 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of hot-dog-like taci_0573 protein from2 thermanaerovibrio acidaminovorans 61 d1cjya2 not modelled 6.9 0 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Lysophospholipase 62 c2hn8A_ not modelled 6.9 17 PDB header:viral protein Chain: A: PDB Molecule:protein pb1-f2; PDBTitle: structural characterization and oligomerization of pb1-f2,2 a pro-apoptotic influenza a virus protein 63 c3jteA_ not modelled 6.8 16 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum 64 c2hw5F_ not modelled 6.8 12 PDB header:lyase Chain: F: PDB Molecule:enoyl-coa hydratase; PDBTitle: the crystal structure of human enoyl-coenzyme a (coa) hydratase short2 chain 1, echs1 65 c3g64A_ not modelled 6.8 17 PDB header:lyase Chain: A: PDB Molecule:putative enoyl-coa hydratase; PDBTitle: crystal structure of putative enoyl-coa hydratase from streptomyces2 coelicolor a3(2) 66 c1yhnB_ not modelled 6.8 25 PDB header:protein transport Chain: B: PDB Molecule:rab interacting lysosomal protein; PDBTitle: structure basis of rilp recruitment by rab7 67 d1jo5a_ not modelled 6.7 14 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 68 c2qziA_ not modelled 6.7 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311. 69 c3emlA_ not modelled 6.7 11 PDB header:membrane protein, receptor Chain: A: PDB Molecule:human adenosine a2a receptor/t4 lysozyme chimera; PDBTitle: the 2.6 a crystal structure of a human a2a adenosine2 receptor bound to zm241385. 70 d1krra_ not modelled 6.7 30 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 71 c2i88A_ not modelled 6.7 12 PDB header:membrane protein Chain: A: PDB Molecule:colicin-e1; PDBTitle: crystal structure of the channel-forming domain of colicin2 e1 72 c3a4cA_ not modelled 6.7 5 PDB header:cell cycle, replication Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: crystal structure of cdt1 c terminal domain 73 c1sneA_ not modelled 6.6 100 PDB header:de novo protein Chain: A: PDB Molecule:tetrameric beta-beta-alpha mini-protein; PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein 74 c1sneB_ not modelled 6.6 100 PDB header:de novo protein Chain: B: PDB Molecule:tetrameric beta-beta-alpha mini-protein; PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein 75 d2diia1 not modelled 6.5 19 Fold:BSD domain-like Superfamily:BSD domain-like Family:BSD domain 76 c2qnaB_ not modelled 6.5 28 PDB header:transport protein Chain: B: PDB Molecule:snurportin-1; PDBTitle: crystal structure of human importin-beta (127-876) in complex with the2 ibb-domain of snurportin1 (1-65) 77 c2g9pA_ not modelled 6.5 19 PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom 78 d2a5yb1 not modelled 6.5 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CED-4 C-terminal domain-like 79 c1irxA_ not modelled 6.4 21 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of class i lysyl-trna synthetase 80 c1vdfB_ not modelled 6.4 14 PDB header:extracellular matrix protein Chain: B: PDB Molecule:cartilage oligomeric matrix protein; PDBTitle: assembly domain of cartilage oligomeric matrix protein 81 c2diiA_ not modelled 6.4 19 PDB header:transcription Chain: A: PDB Molecule:tfiih basal transcription factor complex p62 PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit 82 c1t6sB_ not modelled 6.4 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a conserved hypothetical protein from chlorobium2 tepidum 83 c2ap8A_ not modelled 6.4 43 PDB header:antibiotic Chain: A: PDB Molecule:bombinin h4; PDBTitle: solution structure of bombinin h4 in dpc micelles 84 d2o5ha1 not modelled 6.3 10 Fold:NMB0513-like Superfamily:NMB0513-like Family:NMB0513-like 85 c3hrxD_ not modelled 6.3 16 PDB header:lyase Chain: D: PDB Molecule:probable enoyl-coa hydratase; PDBTitle: crystal structure of phenylacetic acid degradation protein paag 86 c3kikF_ not modelled 6.3 10 PDB header:transcription Chain: F: PDB Molecule:saga-associated factor 11; PDBTitle: sgf11:sus1 complex 87 c3kikE_ not modelled 6.3 10 PDB header:transcription Chain: E: PDB Molecule:saga-associated factor 11; PDBTitle: sgf11:sus1 complex 88 c2kncA_ not modelled 6.3 16 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 89 c1jdmA_ not modelled 6.3 3 PDB header:membrane protein Chain: A: PDB Molecule:sarcolipin; PDBTitle: nmr structure of sarcolipin 90 c3kikH_ not modelled 6.2 10 PDB header:transcription Chain: H: PDB Molecule:saga-associated factor 11; PDBTitle: sgf11:sus1 complex 91 d1unda_ not modelled 6.2 14 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 92 c2nx8A_ not modelled 6.2 11 PDB header:hydrolase Chain: A: PDB Molecule:trna-specific adenosine deaminase; PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes 93 d1wgma_ not modelled 6.2 13 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 94 c3kikG_ not modelled 6.2 10 PDB header:transcription Chain: G: PDB Molecule:saga-associated factor 11; PDBTitle: sgf11:sus1 complex 95 c1zxaB_ not modelled 6.2 11 PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia 96 c2kesA_ not modelled 6.2 33 PDB header:protein binding Chain: A: PDB Molecule:synphilin-1; PDBTitle: solution structure of the coiled-coil domain of synphilin-1 97 c2ww9O_ not modelled 6.1 14 PDB header:ribosome Chain: O: PDB Molecule:60s ribosomal protein l39; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 98 c3kjlF_ not modelled 6.1 10 PDB header:transcription Chain: F: PDB Molecule:saga-associated factor 11; PDBTitle: sgf11:sus1 complex 99 c3zs9D_ not modelled 6.1 29 PDB header:hydrolase/transport protein Chain: D: PDB Molecule:golgi to er traffic protein 2; PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment