Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	D	T	L	P	G	T	T	L	P	D	D	N	H	D	R	P	W	W	G	L	P	C	T	V	T	P	C	F	G	A	R	L	V	Q	E	G	N	R	L	H	Y	L	A	D	R	A	G	I	R	G	L	F	S	D	A	D	A	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?				?	?	?	?				?																																?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	L	D	Q	A	F	P	L	L	M	K	Q	L	E	L	M	L	T	S	G	E	L	N	P	R	H	Q	H	T	V	T	L	Y	A	K	G	L	T	C	K	A	D	T	L	S	S	C	D	Y	V	Y	L	A	V	Y	P	T	P	E	M
Secondary structure
SS confidence
Disorder																	?	?	?		?	?																																			?	?	?	?	?
Disorder confidence
		.	.
Sequence		K	N
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2inw chain A domain 1 Region: 4 - 120 Aligned: 117 Modelled: 117 Confidence: 100.0% Identity: 91% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 2h28 chain A domain 1 Region: 16 - 122 Aligned: 107 Modelled: 107 Confidence: 100.0% Identity: 97% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 2ea9 chain A domain 1 Region: 18 - 117 Aligned: 100 Modelled: 100 Confidence: 100.0% Identity: 65% Fold: Profilin-like Superfamily: YeeU-like Family: YagB/YeeU/YfjZ-like Phyre2 PDB 1ryb chain A Region: 52 - 81 Aligned: 30 Modelled: 30 Confidence: 52.1% Identity: 20% Fold: Phosphorylase/hydrolase-like Superfamily: Peptidyl-tRNA hydrolase-like Family: Peptidyl-tRNA hydrolase-like Phyre2 PDB 3h3y chain F Region: 98 - 116 Aligned: 18 Modelled: 19 Confidence: 46.2% Identity: 22% PDB header:viral protein Chain: F: PDB Molecule:baseplate structural protein gp6; PDBTitle: fitting of the gp6 crystal structure into 3d cryo-em2 reconstruction of bacteriophage t4 star-shaped baseplate Phyre2 PDB 2z2j chain A Region: 52 - 80 Aligned: 29 Modelled: 29 Confidence: 44.6% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis Phyre2 PDB 3v2i chain A Region: 52 - 80 Aligned: 29 Modelled: 29 Confidence: 25.1% Identity: 7% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis Phyre2 PDB 2e7g chain A domain 1 Region: 57 - 121 Aligned: 61 Modelled: 65 Confidence: 24.6% Identity: 21% Fold: Alpha-lytic protease prodomain-like Superfamily: Ribosome-binding factor A, RbfA Family: Ribosome-binding factor A, RbfA Phyre2 PDB 2pth chain A Region: 52 - 80 Aligned: 29 Modelled: 29 Confidence: 24.4% Identity: 21% Fold: Phosphorylase/hydrolase-like Superfamily: Peptidyl-tRNA hydrolase-like Family: Peptidyl-tRNA hydrolase-like Phyre2 PDB 3nea chain A Region: 52 - 80 Aligned: 29 Modelled: 29 Confidence: 23.6% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis Phyre2 PDB 2yqk chain A Region: 45 - 66 Aligned: 22 Modelled: 22 Confidence: 20.9% Identity: 9% PDB header:transcription/apoptosis Chain: A: PDB Molecule:arginine-glutamic acid dipeptide repeats protein; PDBTitle: solution structure of the sant domain in arginine-glutamic2 acid dipeptide (re) repeats Phyre2 PDB 1du0 chain A Region: 53 - 66 Aligned: 14 Modelled: 14 Confidence: 19.2% Identity: 29% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 2qdy chain A domain 1 Region: 22 - 107 Aligned: 68 Modelled: 71 Confidence: 17.7% Identity: 21% Fold: Nitrile hydratase alpha chain Superfamily: Nitrile hydratase alpha chain Family: Nitrile hydratase alpha chain Phyre2 PDB 1lpb chain A domain 2 Region: 96 - 102 Aligned: 7 Modelled: 7 Confidence: 16.7% Identity: 71% Fold: Knottins (small inhibitors, toxins, lectins) Superfamily: Colipase-like Family: Colipase-like Phyre2 PDB 1xv2 chain A Region: 27 - 52 Aligned: 26 Modelled: 26 Confidence: 15.7% Identity: 23% Fold: AF0104/ALDC/Ptd012-like Superfamily: AF0104/ALDC/Ptd012-like Family: Alpha-acetolactate decarboxylase-like Phyre2 PDB 1p7j chain B Region: 53 - 66 Aligned: 14 Modelled: 14 Confidence: 14.5% Identity: 29% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 1mh3 chain A domain 1 Region: 49 - 66 Aligned: 18 Modelled: 18 Confidence: 14.4% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 1s7e chain A domain 1 Region: 51 - 66 Aligned: 16 Modelled: 16 Confidence: 14.3% Identity: 31% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 PDB 1p91 chain A Region: 84 - 122 Aligned: 39 Modelled: 38 Confidence: 13.5% Identity: 13% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: rRNA methyltransferase RlmA Phyre2 PDB 1le8 chain A Region: 51 - 66 Aligned: 16 Modelled: 16 Confidence: 13.0% Identity: 25% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Homeodomain Phyre2 1 d2inwa1 2 d2h28a1 3 d2ea9a1 4 d1ryba_ 5 c3h3yF_ 6 c2z2jA_ 7 c3v2iA_ 8 d2e7ga1 9 d2ptha_ 10 c3neaA_ 11 c2yqkA_ 12 d1du0a_ 13 d2qdya1 14 d1lpba2 15 d1xv2a_ 16 d1p7jb_ 17 d1mh3a1 18 d1s7ea1 19 d1p91a_ 20 d1le8a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2inwa1 100.0 91 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 2 d2h28a1 100.0 97 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 3 d2ea9a1 100.0 65 Fold:Profilin-like Superfamily:YeeU-like Family:YagB/YeeU/YfjZ-like 4 d1ryba_ 52.1 20 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 5 c3h3yF_ 46.2 22 PDB header:viral protein Chain: F: PDB Molecule:baseplate structural protein gp6; PDBTitle: fitting of the gp6 crystal structure into 3d cryo-em2 reconstruction of bacteriophage t4 star-shaped baseplate 6 c2z2jA_ 44.6 17 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis 7 c3v2iA_ 25.1 7 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis 8 d2e7ga1 24.6 21 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 9 d2ptha_ 24.4 21 Fold:Phosphorylase/hydrolase-like Superfamily:Peptidyl-tRNA hydrolase-like Family:Peptidyl-tRNA hydrolase-like 10 c3neaA_ 23.6 17 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis 11 c2yqkA_ 20.9 9 PDB header:transcription/apoptosis Chain: A: PDB Molecule:arginine-glutamic acid dipeptide repeats protein; PDBTitle: solution structure of the sant domain in arginine-glutamic2 acid dipeptide (re) repeats 12 d1du0a_ 19.2 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 13 d2qdya1 17.7 21 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 14 d1lpba2 16.7 71 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Colipase-like Family:Colipase-like 15 d1xv2a_ 15.7 23 Fold:AF0104/ALDC/Ptd012-like Superfamily:AF0104/ALDC/Ptd012-like Family:Alpha-acetolactate decarboxylase-like 16 d1p7jb_ 14.5 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 17 d1mh3a1 14.4 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 18 d1s7ea1 14.3 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 19 d1p91a_ 13.5 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 20 d1le8a_ 13.0 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 21 c3aqoD_ not modelled 12.7 48 PDB header:membrane protein Chain: D: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: structure and function of a membrane component secdf that enhances2 protein export 22 c3hruA_ not modelled 12.5 17 PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ 23 d2obba1 not modelled 12.1 26 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 24 d1e3oc1 not modelled 11.3 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 25 c3a03A_ not modelled 10.6 31 PDB header:gene regulation Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2; PDBTitle: crystal structure of hox11l1 homeodomain 26 c1ze2B_ not modelled 10.5 16 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 27 c1n8sC_ not modelled 10.2 43 PDB header:hydrolase Chain: C: PDB Molecule:colipase ii; PDBTitle: structure of the pancreatic lipase-colipase complex 28 d1au7a1 not modelled 10.0 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 29 c2lcgA_ not modelled 9.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein rmet_5065 from ralstonia2 metallidurans, northeast structural genomics consortium target crr115 30 d1g3wa2 not modelled 9.8 16 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 31 d1sana_ not modelled 8.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 32 d1k8ib2 not modelled 8.9 19 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 33 d1p7ia_ not modelled 8.8 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 34 d1f43a_ not modelled 8.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 35 c2jobA_ not modelled 8.4 0 PDB header:lipid binding protein Chain: A: PDB Molecule:antilipopolysaccharide factor; PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site 36 d1qcva_ not modelled 8.2 33 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 37 d6rxna_ not modelled 8.2 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 38 d1wh5a_ not modelled 8.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 39 d9anta_ not modelled 8.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 40 d1lfba_ not modelled 7.9 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 41 d1ftza_ not modelled 7.9 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 42 d2dsxa1 not modelled 7.9 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 43 d1yz8p1 not modelled 7.9 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 44 d1jgga_ not modelled 7.8 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 45 d2hrkb1 not modelled 7.8 30 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Arc1p N-terminal domain-like 46 d2hddb_ not modelled 7.8 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 47 c2dmqA_ not modelled 7.7 19 PDB header:dna binding protein Chain: A: PDB Molecule:lim/homeobox protein lhx9; PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9 48 d1ocpa_ not modelled 7.7 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 49 d2o5ha1 not modelled 7.6 18 Fold:NMB0513-like Superfamily:NMB0513-like Family:NMB0513-like 50 d2rdva_ not modelled 7.5 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 51 d1h7va_ not modelled 7.4 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 52 d1brfa_ not modelled 7.3 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 53 d1ijwc_ not modelled 7.3 32 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 54 d2craa1 not modelled 7.3 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 55 d1rb9a_ not modelled 7.2 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 56 c2kp6A_ not modelled 7.1 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cv0237 from2 chromobacterium violaceum. northeast structural genomics3 consortium (nesg) target cvt1 57 d1iu5a_ not modelled 7.1 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 58 c2da1A_ not modelled 7.0 31 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1) 59 d1iroa_ not modelled 7.0 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 60 c1s24A_ not modelled 6.9 33 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin 2; PDBTitle: rubredoxin domain ii from pseudomonas oleovorans 61 d1s24a_ not modelled 6.9 33 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 62 c1x93B_ not modelled 6.9 40 PDB header:transcription Chain: B: PDB Molecule:hypothetical protein hp0222; PDBTitle: nmr structure of helicobacter pylori hp0222 63 d1x93a1 not modelled 6.9 40 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 64 d1fjla_ not modelled 6.8 38 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 65 c2dmuA_ not modelled 6.8 31 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein goosecoid; PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid 66 d4rxna_ not modelled 6.7 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 67 c2v3bB_ not modelled 6.7 33 PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa. 68 c3fhkF_ not modelled 6.7 25 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:upf0403 protein yphp; PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide2 isomerase 69 d1dx8a_ not modelled 6.6 50 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 70 c2da4A_ not modelled 6.6 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 71 c2l9rA_ not modelled 6.5 19 PDB header:transcription Chain: A: PDB Molecule:homeobox protein nkx-3.1; PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a 72 d1b8ia_ not modelled 6.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 73 d1b72a_ not modelled 6.3 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 74 d1hcra_ not modelled 6.3 38 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 75 c2djnA_ not modelled 6.1 25 PDB header:transcription Chain: A: PDB Molecule:homeobox protein dlx-5; PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5 76 d1qasa3 not modelled 6.0 50 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Mammalian PLC 77 d1zl8a1 not modelled 5.9 21 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 78 d1vnda_ not modelled 5.9 44 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 79 c2dmsA_ not modelled 5.9 31 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein otx2; PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2 80 c3eq1A_ not modelled 5.8 28 PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution 81 c2dmtA_ not modelled 5.7 25 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein barh-like 1; PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1 82 d2vzsa1 not modelled 5.6 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 83 d1ztra1 not modelled 5.6 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 84 c1a31A_ not modelled 5.6 24 PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex 85 c2kn9A_ not modelled 5.5 33 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a 86 d1gvda_ not modelled 5.5 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 87 c1zcjA_ not modelled 5.5 25 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal bifunctional enzyme; PDBTitle: crystal structure of 3-hydroxyacyl-coa dehydrogenase 88 c2da2A_ not modelled 5.5 31 PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; PDBTitle: solution structure of the second homeobox domain of at-2 binding transcription factor 1 (atbf1) 89 d1nk3p_ not modelled 5.4 38 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 90 d1uhsa_ not modelled 5.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 91 d2cufa1 not modelled 5.4 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 92 c2hfpB_ not modelled 5.4 83 PDB header:transcription Chain: B: PDB Molecule:src peptide fragment; PDBTitle: crystal structure of ppar gamma with n-sulfonyl-2-indole2 carboxamide ligands 93 c3a01A_ not modelled 5.3 25 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeodomain-containing protein; PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna 94 c1k74E_ not modelled 5.3 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.3 angstrom resolution crystal structure of the2 heterodimer of the human ppargamma and rxralpha ligand3 binding domains respectively bound with gw409544 and 9-cis4 retinoic acid and co-activator peptides. 95 c1fm9E_ not modelled 5.3 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and gi262570 and co-activator peptides. 96 c1fm6E_ not modelled 5.3 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides. 97 c3kmgE_ not modelled 5.3 83 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator-1; PDBTitle: the x-ray crystal structure of ppar-gamma in complex with an indole2 derivative modulator, gsk538, and an src-1 peptide 98 c1fm6V_ not modelled 5.3 83 PDB header:transcription Chain: V: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides. 99 d1hdpa_ not modelled 5.3 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0