Phyre 2 alignment of P31455 with c2pm9A

Job Description P31455
Confidence 99.88% Date Thu Jan 5 11:47:46 GMT 2012

Rank 28 Aligned Residues 345

% Identity 13% Template c2pm9A_

PDB info PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat

Resolution 3.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.														.
Query SS confidence																									.	.	.	.														.
Query Sequence	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	.	.	.	.	T	G	E	T	I	E	R	V	N	I	H	T	G	.	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T
Query Conservation																									.	.	.	.														.
Alig confidence																									.	.	.	.														.																												.
Template Conservation																																																																						.
Template Sequence	T	A	T	F	A	W	S	H	D	K	I	P	L	L	V	S	G	T	V	S	G	T	V	D	A	N	F	S	T	D	S	S	L	E	L	W	S	L	L	A	A	D	S	E	K	P	I	A	S	L	Q	V	D	S	K	F	N	D	L	D	W	S	H	N	N	K	I	I	A	.	G	A	L	D	N	G	S	L	E	L
Template Known Secondary structure	S		B			B		S	S	S	S						B		B	S	S				S	S												S	S	S	G	G	G		S		S						S	S									S	S	S	S				.				S	S	S
Template Predicted Secondary structure																																																																						.
Template SS confidence
	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.

	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L	D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	.	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G
Query Conservation																																															.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Y	S	T	N	E	A	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	N	S	M	A	R	F	S	N	H	S	S	S	V	K	T	V	K	F	N	A	K	Q	D	N	V	L	A	S	G	G	N	N	G	E	I	F	I	W	D	M	N	K	C	T	E	S	P	S	N	Y	T	P	L	T
Template Known Secondary structure				S	S	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S	S	S									S	S	S	T	T	B						S	S	S				B		B	T	T	T	T	S	S		T	T	T				B
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	89	90	.	.	.	.	.	.																	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.

	179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	V	N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K	V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	G	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	S	V	D	E	V	I	S	L	A	W	N	Q	S	L	A	H	V	F	A	S	A	G	S	S	N	F	A	S	I	W	D	L	K	A	K	K	E	V	I	H	L	S	Y	T	S	P	N	S	G	I	K	Q	Q	L	S	V
Template Known Secondary structure				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S										S	S		T	T						S	S	S	S							T	T	T	T												S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	153	.	.	.																			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.						.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																												.	.	.	.	.
Query SS confidence																												.	.	.	.	.
Query Sequence	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	.	.	.	.	.	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H	W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E
Query Conservation																												.	.	.	.	.
Alig confidence																												.	.	.	.	.																																			.	.	.
Template Conservation																																																																			.	.	.
Template Sequence	V	E	W	H	P	K	N	S	T	R	V	A	T	A	T	G	S	D	N	D	P	S	I	L	I	W	D	L	R	N	A	N	T	P	L	Q	T	L	N	Q	G	H	Q	K	G	I	L	S	L	D	W	C	H	Q	D	E	H	L	L	L	S	S	G	R	D	N	.	.	.	T	V	L	L	W	N	P	E	S	A	E
Template Known Secondary structure					S	S		T	T									S	S	S								T	T	S	T	T	S		S	B				S			S	S									S	S		S	S							S	S	S	.	.	.							S	S	S
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
	215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.	.	290	.

	334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.												.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																						.								.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.								.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	.	E	W	L	G	F	V	L	.	D	N	R	I	A	C	A	H	A	Q	S	G	E	.	.	.	.	.	.	.	.	.	.	.	V	E	Y	L	T	E	H	H	A	N	S	P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L
Query Conservation																						.								.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.								.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Q	L	S	Q	F	P	A	R	G	N	W	C	F	K	T	K	F	A	P	E	A	P	D	L	F	A	C	A	S	F	D	N	K	I	E	V	Q	T	L	Q	N	L	T	N	T	L	D	E	S	K	E	K	P	S	V	F	H	L	Q	A	P	T	W	Y	G	E	P	S	P	A	A	H	W	A	F	G	G	K	L	V
Template Known Secondary structure								S	S	S									T	T		T	T							S	S	S							S						S	S					S				S	S						S	T	T				S							T	T	T
Template Predicted Secondary structure
Template SS confidence
	292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

	401	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	W	M	E	G	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Q	I	T	P	D	G	K
Template Known Secondary structure		B		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
	394	.	.	.	.	.	400

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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