Email l.a.kelley@imperial.ac.uk Description P30128 Date Thu Jan 5 11:45:49 GMT 2012 Unique Job ID d4c504c095daa4f4

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2p4vA_ 100.0 99 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 2 c1grjA_ 100.0 34 PDB header:transcription regulation Chain: A: PDB Molecule:grea protein; PDBTitle: grea transcript cleavage factor from escherichia coli 3 c2etnA_ 100.0 27 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 4 c3bmbB_ 100.0 20 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 5 c2pn0D_ 100.0 24 PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea 6 d1grja1 99.9 29 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 7 d2f23a1 99.9 26 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 8 d2f23a2 99.9 32 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 9 d2etna2 99.8 33 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 10 d1grja2 99.8 39 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 11 c3gtyX_ 95.5 17 PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone 12 c1w26B_ 93.2 16 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 13 d1w26a3 91.1 14 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 14 d1t11a3 89.9 18 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 15 c1t11A_ 83.6 16 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 16 c3o0pA_ 68.8 26 PDB header:transferase , hydrolase Chain: A: PDB Molecule:sortase family protein; PDBTitle: pilus-related sortase c of group b streptococcus 17 d1ndha1 68.5 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 18 c1cz5A_ 67.9 22 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 19 c2kw8A_ 67.7 19 PDB header:protein binding Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein; PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase 20 d1t2wa_ 66.5 19 Fold:Sortase Superfamily:Sortase Family:Sortase 21 d1krha1 not modelled 66.1 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 22 d1umka1 not modelled 65.9 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 23 d2cnda1 not modelled 65.8 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 24 d1qx4a1 not modelled 65.1 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 25 c3re9A_ not modelled 62.2 23 PDB header:transferase Chain: A: PDB Molecule:sortase-like protein; PDBTitle: crystal structure of sortasec1 from streptococcus suis 26 c3fn5B_ not modelled 61.5 13 PDB header:hydrolase Chain: B: PDB Molecule:sortase a; PDBTitle: crystal structure of sortase a (spy1154) from streptococcus2 pyogenes serotype m1 strain sf370 27 d2piaa1 not modelled 60.8 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 28 c3g66A_ not modelled 60.5 26 PDB header:transferase Chain: A: PDB Molecule:sortase c; PDBTitle: the crystal structure of streptococcus pneumoniae sortase c2 provides novel insights into catalysis as well as pilin3 substrate specificity 29 c2xwgA_ not modelled 59.9 32 PDB header:hydrolase Chain: A: PDB Molecule:sortase; PDBTitle: crystal structure of sortase c-1 from actinomyces oris (formerly2 actinomyces naeslundii) 30 c2w1kB_ not modelled 59.2 19 PDB header:transferase Chain: B: PDB Molecule:putative sortase; PDBTitle: crystal structure of sortase c-3 (srtc-3) from2 streptococcus pneumoniae 31 d1fdra1 not modelled 52.5 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 32 c3rccI_ not modelled 52.4 16 PDB header:hydrolase Chain: I: PDB Molecule:sortase srta; PDBTitle: crystal structure of the streptococcus agalactiae sortase a 33 d1e32a3 not modelled 50.8 15 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 34 d1l1pa_ not modelled 49.9 5 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 35 c1zeqX_ not modelled 49.4 13 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 36 c2kfwA_ not modelled 47.8 40 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 37 c3rbjB_ not modelled 47.5 29 PDB header:hydrolase Chain: B: PDB Molecule:sortase family protein; PDBTitle: crystal structure of the lid-mutant of streptococcus agalactiae2 sortase c1 38 c2pjhB_ not modelled 44.8 19 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 39 c2w1jB_ not modelled 42.8 26 PDB header:transferase Chain: B: PDB Molecule:putative sortase; PDBTitle: crystal structure of sortase c-1 (srtc-1) from2 streptococcus pneumoniae 40 c2dq0A_ not modelled 41.4 28 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog 41 c2k8iA_ not modelled 39.8 38 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 42 c2l66B_ not modelled 39.2 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 43 c3cgnA_ not modelled 38.8 22 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 44 c3pr9A_ not modelled 38.7 25 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 45 c3shuB_ not modelled 38.3 22 PDB header:cell adhesion Chain: B: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3 46 d1hxva_ not modelled 38.2 11 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 47 c1hxvA_ not modelled 38.2 11 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor 48 c2kr7A_ not modelled 37.4 26 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 49 c2l55A_ not modelled 35.8 7 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 50 d1qfja1 not modelled 32.1 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 51 c3g5oA_ not modelled 32.0 16 PDB header:toxin/antitoxin Chain: A: PDB Molecule:uncharacterized protein rv2865; PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis 52 c3u5cG_ not modelled 31.4 18 PDB header:ribosome Chain: G: PDB Molecule:40s ribosomal protein s6-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 53 c3prdA_ not modelled 29.6 25 PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 54 d1kwaa_ not modelled 29.4 13 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 55 c2gpjA_ not modelled 29.3 17 PDB header:fad-binding protein Chain: A: PDB Molecule:siderophore-interacting protein; PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution 56 d2iv2x1 not modelled 29.0 14 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 57 c2z17A_ not modelled 28.4 35 PDB header:protein binding Chain: A: PDB Molecule:pleckstrin homology sec7 and coiled-coil domains- PDBTitle: crystal sturcture of pdz domain from human pleckstrin2 homology, sec7 58 c3shwA_ not modelled 28.3 27 PDB header:cell adhesion Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3-sh3-guk supramodule complex with2 connexin-45 peptide 59 c2xznY_ not modelled 27.9 18 PDB header:ribosome Chain: Y: PDB Molecule:rps6e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 60 d1gvha2 not modelled 27.8 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 61 c3k1rA_ not modelled 27.5 13 PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 62 c1e0tD_ not modelled 27.4 16 PDB header:phosphotransferase Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: r292d mutant of e. coli pyruvate kinase 63 d2gp4a1 not modelled 27.3 26 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like 64 c2eehA_ not modelled 27.2 24 PDB header:metal binding protein Chain: A: PDB Molecule:pdz domain-containing protein 7; PDBTitle: solution structure of first pdz domain of pdz domain2 containing protein 7 65 d1pina2 not modelled 26.9 18 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 66 c3lssA_ not modelled 26.6 7 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp 67 d1dm9a_ not modelled 26.2 23 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 68 c1dm9A_ not modelled 26.2 23 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 69 d1ix5a_ not modelled 26.1 33 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 70 d2jioa1 not modelled 26.0 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 71 c2krgA_ not modelled 24.5 11 PDB header:signaling protein Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf1; PDBTitle: solution structure of human sodium/ hydrogen exchange2 regulatory factor 1(150-358) 72 c1w9qB_ not modelled 24.4 18 PDB header:cell adhesion Chain: B: PDB Molecule:syntenin 1; PDBTitle: crystal structure of the pdz tandem of human syntenin in2 complex with tnefaf peptide 73 d1tvca1 not modelled 24.3 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 74 d1vlfm1 not modelled 24.1 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 75 d1st6a4 not modelled 23.4 22 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 76 d1h0ha1 not modelled 22.7 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 77 c2gzvA_ not modelled 22.1 17 PDB header:signaling protein Chain: A: PDB Molecule:prkca-binding protein; PDBTitle: the cystal structure of the pdz domain of human pick1 (casp target) 78 d1ep3b1 not modelled 21.7 20 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 79 d1nbwa1 not modelled 21.4 41 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit 80 c2ejyA_ not modelled 21.1 13 PDB header:membrane protein Chain: A: PDB Molecule:55 kda erythrocyte membrane protein; PDBTitle: solution structure of the p55 pdz t85c domain complexed2 with the glycophorin c f127c peptide 81 d1st6a3 not modelled 20.0 23 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 82 d2a6qa1 not modelled 19.5 18 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 83 d1ogya1 not modelled 19.3 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 84 c3e0vB_ not modelled 18.5 21 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from leishmania mexicana in2 complex with sulphate ions 85 d2d0oa1 not modelled 18.4 50 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit 86 d1wi2a_ not modelled 18.0 24 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 87 d1gawa1 not modelled 17.9 28 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 88 d1kqfa1 not modelled 17.7 22 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 89 c2ki8A_ not modelled 17.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase, PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7 90 d2bmwa1 not modelled 17.2 25 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 91 d2f5ya1 not modelled 17.1 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 92 d1seta1 not modelled 17.0 22 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Seryl-tRNA synthetase (SerRS) 93 d1eu1a1 not modelled 16.7 21 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 94 c2piaA_ not modelled 16.5 20 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 95 d1vloa1 not modelled 16.5 20 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 96 c2gp4A_ not modelled 16.1 26 PDB header:lyase Chain: A: PDB Molecule:6-phosphogluconate dehydratase; PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis 97 d1qwza_ not modelled 15.8 10 Fold:Sortase Superfamily:Sortase Family:Sortase 98 c2g16A_ not modelled 15.7 28 PDB header:luminescent protein Chain: A: PDB Molecule:green fluorescent protein; PDBTitle: structure of s65a y66s gfp variant after backbone2 fragmentation 99 c2fug4_ not modelled 15.6 12 PDB header:oxidoreductase Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus