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Job DescriptionP10902
Confidence99.25%DateThu Jan 5 11:32:21 GMT 2012
Rank163Aligned Residues196
% Identity12%Templatec1ltxR_
PDB info PDB header:transferase/protein bindingChain: R: PDB Molecule:rab escort protein 1; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30. ........40........
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Query Sequence  PEHSCDVLIIGSGAAGLSLALRLADQH. QVIVLSKGPVTEGSTFY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENTENSMWQEQILENEEAIPL
Template Known Secondary structure 

SB
S

STT


SSSSS
GGG

TTT






GGGGS
TTB
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   4950.........60.........70....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AQGGIAAVFDETDSIDSHVEDTLIAG. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SSKDKTIQHVEVFCYASQDKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVE
Template Known Secondary structure 
SS



STT





TGGG

SS


TTSTGGGG

TT
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   8990.........100.........110.........120.........130.........140.........150.........160........
 
   75....80.........90.........100.........110.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPN
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Template Sequence  QVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTFSEYLKTQK. LTPNLQYFVLHSIAMTSTSCTVD
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S
SSS
TTGGG
GGGTGGGTTSBSS.

TTTS




B
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   270.........280.........290.........300.........310.........320..... ....330.........340........
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
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Query Sequence  GEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERSNAVDLIVSDKIGLPGTRRVVGAWVWNRNKET
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Template Sequence  GLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKE. . . . . . . . . . SRKCKAVIDQF
Template Known Secondary structure  TTTTSSSSSSTT
TTTT
TT

TT..........T

TT
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   351........360.........370.........380.........390.........400......... 410.........420
 
   192.......200.........210.
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Query Sequence  VETCHAKAVVLATGGASKVY
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Template Sequence  GQRIISKHFIIEDSYLSENT
Template Known Secondary structure 


SGGGB
TTT
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   421........430.........440
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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