Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	Q	R	H	I	T	G	K	S	H	W	Y	H	E	T	Q	S	S	T	T	E	Y	D	V	L	P	L	V	P	E	A	A	K	V	S	D	P	F	L	L	D	V	I	L	E	K	E	T	L	A	P	F	L	S	W	L	D	P	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?									?	?	?	?	?	?						?	?																									?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	V	L	A	V	D	L	F	P	D	Q	L	T	V	T	R	S	Q	T	F	T	A	Y	E	R	L	S	T	A	L	T	V	A	Q	V	C	G	V	Q	R	L	C	N	Y	Y	S	A	R	L	T	P	L	P	G	P	D	S	T	R	E
Secondary structure
SS confidence
Disorder														?	?	?	?	?	?	?		?														?																?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	N	H	R	L	A	Q	I	T	Q	Y	A	R	Q	L	A	S	S	P	S	I	I	D	N	R	S	R	Q	H	L	N	D	V	G	L	T	A	W	D	C	V	I	I	S	Q	I	I	G	F	I	G	F	Q	A	R	T	I	A	T	F
Secondary structure
SS confidence
Disorder		?	?	?																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	A	Y	L	G	H	P	V	R	W	L	P	G	L	E	I	Q	N	Y	A	D	A	S	L	F	A	D	E	S	L	R	W	R	S	S	Y	E	V	E	K	L	P	E	E	H	T	K	S	S	T	A	E	L	C	Q	L	A	E	I	L
Secondary structure
SS confidence
Disorder						?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?				?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	L	H	P	I	S	L	S	L	L	E	K	L	L	N	S	T	R	G	N	T	Q	P	D	N	Q	L	A	A	L	L	C	A	R	I	N	G	S	P	A	C	F	A	T	C	M	D	S	S	N	E	Y	K	K	I	S	T	L	M	R
Secondary structure
SS confidence
Disorder																?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		K	G	E	N	E	I	N	Q	W	A	D	R	H	S	V	E	R	A	T	V	Q	A	I	Q	W	L	T	R	A	P	D	R	F	S	A	A	Q	F	S	P	L	L	E	H	E	K	S	S	T	Q	I	I	N	L	L	V	W	S	G	L
Secondary structure
SS confidence
Disorder								?	?		?	?																		?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Sequence		C	G	W	I	N	R	L	K	I	A	L	G	E	T	Y
Secondary structure
SS confidence
Disorder												?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2prr chain A domain 1 Region: 214 - 374 Aligned: 160 Modelled: 159 Confidence: 100.0% Identity: 16% Fold: AhpD-like Superfamily: AhpD-like Family: Atu0492-like Phyre2 PDB 2pfx chain A domain 1 Region: 214 - 373 Aligned: 159 Modelled: 159 Confidence: 100.0% Identity: 13% Fold: AhpD-like Superfamily: AhpD-like Family: Atu0492-like Phyre2 PDB 3c1l chain B Region: 227 - 374 Aligned: 147 Modelled: 148 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105; PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution Phyre2 PDB 3lvy chain B Region: 213 - 374 Aligned: 161 Modelled: 161 Confidence: 100.0% Identity: 14% PDB header:lyase Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family; PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans Phyre2 PDB 2oyo chain A domain 1 Region: 214 - 374 Aligned: 160 Modelled: 161 Confidence: 100.0% Identity: 19% Fold: AhpD-like Superfamily: AhpD-like Family: Atu0492-like Phyre2 PDB 2o4d chain A domain 1 Region: 234 - 373 Aligned: 139 Modelled: 137 Confidence: 100.0% Identity: 16% Fold: AhpD-like Superfamily: AhpD-like Family: Atu0492-like Phyre2 PDB 2gmy chain A domain 1 Region: 237 - 375 Aligned: 138 Modelled: 139 Confidence: 100.0% Identity: 16% Fold: AhpD-like Superfamily: AhpD-like Family: Atu0492-like Phyre2 PDB 2ouw chain A domain 1 Region: 213 - 374 Aligned: 110 Modelled: 109 Confidence: 99.7% Identity: 18% Fold: AhpD-like Superfamily: AhpD-like Family: TTHA0727-like Phyre2 PDB 3bey chain C Region: 236 - 303 Aligned: 68 Modelled: 68 Confidence: 99.0% Identity: 12% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:conserved protein o27018; PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217 Phyre2 PDB 1vke chain A Region: 227 - 328 Aligned: 102 Modelled: 102 Confidence: 98.9% Identity: 11% Fold: AhpD-like Superfamily: AhpD-like Family: CMD-like Phyre2 PDB 1p8c chain D Region: 238 - 328 Aligned: 91 Modelled: 91 Confidence: 98.9% Identity: 10% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima Phyre2 PDB 2qeu chain A Region: 227 - 303 Aligned: 77 Modelled: 77 Confidence: 98.9% Identity: 12% PDB header:lyase Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase; PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution Phyre2 PDB 1knc chain A Region: 258 - 304 Aligned: 47 Modelled: 47 Confidence: 98.8% Identity: 13% Fold: AhpD-like Superfamily: AhpD-like Family: AhpD Phyre2 PDB 3d7i chain B Region: 236 - 304 Aligned: 69 Modelled: 68 Confidence: 98.6% Identity: 12% PDB header:lyase Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein; PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution Phyre2 PDB 2q0t chain A domain 1 Region: 227 - 363 Aligned: 137 Modelled: 137 Confidence: 98.5% Identity: 12% Fold: AhpD-like Superfamily: AhpD-like Family: AhpD Phyre2 PDB 2cwq chain A domain 1 Region: 227 - 303 Aligned: 77 Modelled: 77 Confidence: 98.4% Identity: 16% Fold: AhpD-like Superfamily: AhpD-like Family: TTHA0727-like Phyre2 PDB 1vke chain B Region: 246 - 303 Aligned: 58 Modelled: 58 Confidence: 98.3% Identity: 7% Fold: AhpD-like Superfamily: AhpD-like Family: CMD-like Phyre2 PDB 2af7 chain A domain 1 Region: 236 - 303 Aligned: 68 Modelled: 67 Confidence: 96.6% Identity: 7% Fold: AhpD-like Superfamily: AhpD-like Family: CMD-like Phyre2 PDB 1a9x chain A domain 1 Region: 287 - 355 Aligned: 66 Modelled: 69 Confidence: 92.1% Identity: 9% Fold: Carbamoyl phosphate synthetase, large subunit connection domain Superfamily: Carbamoyl phosphate synthetase, large subunit connection domain Family: Carbamoyl phosphate synthetase, large subunit connection domain Phyre2 PDB 3bjx chain B Region: 317 - 369 Aligned: 53 Modelled: 53 Confidence: 68.5% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi; PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3 Phyre2 1 d2prra1 2 d2pfxa1 3 c3c1lB_ 4 c3lvyB_ 5 d2oyoa1 6 d2o4da1 7 d2gmya1 8 d2ouwa1 9 c3beyC_ 10 d1vkea_ 11 c1p8cD_ 12 c2qeuA_ 13 d1knca_ 14 c3d7iB_ 15 d2q0ta1 16 d2cwqa1 17 d1vkeb_ 18 d2af7a1 19 d1a9xa1 20 c3bjxB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2prra1 100.0 16 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 2 d2pfxa1 100.0 13 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 3 c3c1lB_ 100.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105; PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution 4 c3lvyB_ 100.0 14 PDB header:lyase Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family; PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans 5 d2oyoa1 100.0 19 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 6 d2o4da1 100.0 16 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 7 d2gmya1 100.0 16 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 8 d2ouwa1 99.7 18 Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like 9 c3beyC_ 99.0 12 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:conserved protein o27018; PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217 10 d1vkea_ 98.9 11 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 11 c1p8cD_ 98.9 10 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima 12 c2qeuA_ 98.9 12 PDB header:lyase Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase; PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution 13 d1knca_ 98.8 13 Fold:AhpD-like Superfamily:AhpD-like Family:AhpD 14 c3d7iB_ 98.6 12 PDB header:lyase Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein; PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution 15 d2q0ta1 98.5 12 Fold:AhpD-like Superfamily:AhpD-like Family:AhpD 16 d2cwqa1 98.4 16 Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like 17 d1vkeb_ 98.3 7 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 18 d2af7a1 96.6 7 Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like 19 d1a9xa1 92.1 9 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 20 c3bjxB_ 68.5 13 PDB header:hydrolase Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi; PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3 21 c3cixA_ not modelled 54.4 11 PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate 22 c3iwfA_ not modelled 41.4 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcription regulator rpir family; PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a 23 d2a1ka1 not modelled 39.9 43 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Phage ssDNA-binding proteins 24 c3omdB_ not modelled 39.4 7 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum 25 d1bkra_ not modelled 38.9 25 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 26 c2d87A_ not modelled 38.2 15 PDB header:structural protein, protein binding Chain: A: PDB Molecule:smoothelin splice isoform l2; PDBTitle: solution structure of the ch domain from human smoothelin2 splice isoform l2 27 c1m6vE_ not modelled 36.3 9 PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase 28 c2vn2B_ not modelled 35.9 20 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 29 d1gpca_ not modelled 33.7 43 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Phage ssDNA-binding proteins 30 c2d89A_ not modelled 31.6 18 PDB header:structural protein, protein binding Chain: A: PDB Molecule:ehbp1 protein; PDBTitle: solution structure of the ch domain from human eh domain2 binding protein 1 31 c2krkA_ not modelled 31.4 16 PDB header:protein binding Chain: A: PDB Molecule:26s protease regulatory subunit 8; PDBTitle: solution nmr structure of 26s protease regulatory subunit 82 from h.sapiens, northeast structural genomics consortium3 target target hr3102a 32 c1wylA_ not modelled 30.5 30 PDB header:signaling protein Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: solution structure of the ch domain of human nedd92 interacting protein with calponin homology and lim domains 33 c3mhvC_ not modelled 28.6 13 PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of vps4 and vta1 34 c3rmsA_ not modelled 26.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein svir_20580 from2 saccharomonospora viridis 35 d1t3wa_ not modelled 24.7 15 Fold:DNA primase DnaG, C-terminal domain Superfamily:DNA primase DnaG, C-terminal domain Family:DNA primase DnaG, C-terminal domain 36 d2csba4 not modelled 23.0 29 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 37 d1t33a2 not modelled 22.9 10 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 38 c1wr1B_ not modelled 22.7 20 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 39 c2dt7A_ not modelled 20.5 36 PDB header:rna binding protein Chain: A: PDB Molecule:splicing factor 3a subunit 3; PDBTitle: solution structure of the second surp domain of human2 splicing factor sf3a120 in complex with a fragment of3 human splicing factor sf3a60 40 c2v79B_ not modelled 20.3 20 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 41 c1t3bA_ not modelled 20.2 11 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 42 c3n7qA_ not modelled 19.1 19 PDB header:transcription, replication/dna Chain: A: PDB Molecule:transcription termination factor, mitochondrial; PDBTitle: crystal structure of human mitochondrial mterf fragment (aa 99-399) in2 complex with a 12-mer dna encompassing the trnaleu(uur) binding3 sequence 43 d1sh5a2 not modelled 18.8 28 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 44 c3l9vE_ not modelled 18.7 33 PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga 45 c3dvwA_ not modelled 18.5 22 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis 46 c2rcyB_ not modelled 18.1 12 PDB header:oxidoreductase Chain: B: PDB Molecule:pyrroline carboxylate reductase; PDBTitle: crystal structure of plasmodium falciparum pyrroline carboxylate2 reductase (mal13p1.284) with nadp bound 47 c2d88A_ not modelled 18.0 13 PDB header:signaling protein, protein binding Chain: A: PDB Molecule:protein mical-3; PDBTitle: solution structure of the ch domain from human mical-32 protein 48 d1bhda_ not modelled 17.5 25 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 49 c3bj4B_ not modelled 17.0 41 PDB header:signaling protein Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt PDBTitle: the kcnq1 (kv7.1) c-terminus, a multi-tiered scaffold for2 subunit assembly and protein interaction 50 c3lgcA_ not modelled 16.9 25 PDB header:unknown function Chain: A: PDB Molecule:glutaredoxin 1; PDBTitle: crystal structure of glutaredoxin 1 from francisella2 tularensis 51 d1sxjd1 not modelled 15.8 11 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 52 c1v57A_ not modelled 15.8 18 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg; PDBTitle: crystal structure of the disulfide bond isomerase dsbg 53 c3hd5A_ not modelled 15.1 11 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis 54 c3gv1A_ not modelled 15.0 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae 55 c2jy5A_ not modelled 14.7 13 PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain 56 d2ccaa1 not modelled 14.5 11 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 57 d1xcca_ not modelled 14.5 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 58 d1t3ba1 not modelled 14.3 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 59 c2remB_ not modelled 13.8 22 PDB header:oxidoreductase Chain: B: PDB Molecule:disulfide oxidoreductase; PDBTitle: crystal structure of oxidoreductase dsba from xylella2 fastidiosa 60 d1m3va1 not modelled 13.7 56 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 61 d1rt8a_ not modelled 13.7 23 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 62 c3hi2D_ not modelled 13.6 11 PDB header:dna binding protein/toxin Chain: D: PDB Molecule:motility quorum-sensing regulator mqsr; PDBTitle: structure of the n-terminal domain of the e. coli antitoxin mqsa2 (ygit/b3021) in complex with the e. coli toxin mqsr (ygiu/b3022) 63 c3gykC_ not modelled 13.1 14 PDB header:oxidoreductase Chain: C: PDB Molecule:27kda outer membrane protein; PDBTitle: the crystal structure of a thioredoxin-like oxidoreductase from2 silicibacter pomeroyi dss-3 64 c1jzdA_ not modelled 13.0 0 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex 65 c3riwA_ not modelled 12.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:ascorbate peroxidase; PDBTitle: the crystal structure of leishmania major peroxidase mutant c197t 66 d1eeja1 not modelled 12.3 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 67 c2k9hA_ not modelled 12.1 35 PDB header:metal binding protein Chain: A: PDB Molecule:glycoprotein; PDBTitle: the hantavirus glycoprotein g1 tail contains a dual cchc-2 type classical zinc fingers 68 d2vkva2 not modelled 11.8 10 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 69 c3ghaA_ not modelled 11.7 19 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond formation protein d; PDBTitle: crystal structure of etda-treated bdbd (reduced) 70 c3c7mB_ not modelled 11.6 13 PDB header:oxidoreductase Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like; PDBTitle: crystal structure of reduced dsbl 71 d1prxa_ not modelled 11.4 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 72 d2o3fa1 not modelled 11.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:RpiR-like 73 c3feuA_ not modelled 11.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri 74 d2euta1 not modelled 11.2 7 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:CCP-like 75 c2v2gC_ not modelled 11.2 29 PDB header:oxidoreductase Chain: C: PDB Molecule:peroxiredoxin 6; PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form 76 c2qjxA_ not modelled 11.0 18 PDB header:protein binding Chain: A: PDB Molecule:protein bim1; PDBTitle: structural basis of microtubule plus end tracking by2 xmap215, clip-170 and eb1 77 d1repc1 not modelled 10.7 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Replication initiation protein 78 d1pxya_ not modelled 10.6 19 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 79 d1j2oa1 not modelled 10.5 22 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 80 c3mk7B_ not modelled 10.5 33 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o; PDBTitle: the structure of cbb3 cytochrome oxidase 81 c3bciA_ not modelled 10.5 13 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond protein a; PDBTitle: crystal structure of staphylococcus aureus dsba 82 d2zcta1 not modelled 10.3 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 83 c2o3fC_ not modelled 10.1 17 PDB header:transcription Chain: C: PDB Molecule:putative hth-type transcriptional regulator ybbh; PDBTitle: structural genomics, the crystal structure of the n-2 terminal domain of the putative transcriptional regulator3 ybbh from bacillus subtilis subsp. subtilis str. 168. 84 d1un2a_ not modelled 10.1 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 85 d1ehsa_ not modelled 10.0 50 Fold:Toxic hairpin Superfamily:Heat-stable enterotoxin B Family:Heat-stable enterotoxin B 86 d1dxxa2 not modelled 9.8 25 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 87 c3gmfA_ not modelled 9.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:protein-disulfide isomerase; PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans 88 d2daha1 not modelled 9.1 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 89 d2e39a1 not modelled 9.0 15 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:CCP-like 90 d1oqya2 not modelled 8.9 9 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 91 d1rutx1 not modelled 8.9 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 92 d2bwba1 not modelled 8.9 14 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 93 d1h75a_ not modelled 8.7 31 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 94 c1g6uB_ not modelled 8.7 15 PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer 95 d1mwva1 not modelled 8.7 15 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 96 d1fova_ not modelled 8.6 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 97 c3nznA_ not modelled 8.5 13 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1 98 c1nm3B_ not modelled 8.4 23 PDB header:electron transport Chain: B: PDB Molecule:protein hi0572; PDBTitle: crystal structure of heamophilus influenza hybrid-prx5 99 c2agaA_ not modelled 8.3 33 PDB header:transcription Chain: A: PDB Molecule:machado-joseph disease protein 1; PDBTitle: de-ubiquitinating function of ataxin-3: insights from the2 solution structure of the josephin domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0