Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	K	V	L	D	S	A	L	L	S	S	A	N	K	R	K	G	I	L	A	I	G	A	H	P	D	D	I	E	L	G	C	G	A	S	L	A	R	L	A	Q	K	G	I	Y	I	A	A	V	V	M	T	T	G	N	S	G	T	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																																										?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	I	I	D	R	H	E	E	S	R	N	A	L	K	I	L	G	C	H	Q	T	I	H	L	N	F	A	D	T	R	A	H	L	Q	L	N	D	M	I	S	A	L	E	D	I	I	K	N	Q	I	P	S	D	V	E	I	M	R	V	Y
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	M	H	D	A	D	R	H	Q	D	H	L	A	V	Y	Q	A	S	M	V	A	C	R	T	I	P	Q	I	L	G	Y	E	T	P	S	T	W	L	S	F	M	P	Q	V	F	E	S	V	K	E	E	Y	F	T	V	K	L	A	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.
Sequence		K	K	H	K	S
Secondary structure
SS confidence
Disorder			?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ixd chain B Region: 18 - 185 Aligned: 161 Modelled: 163 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: B: PDB Molecule:lmbe-related protein; PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus Phyre2 PDB 1uan chain A Region: 18 - 185 Aligned: 161 Modelled: 168 Confidence: 100.0% Identity: 27% Fold: LmbE-like Superfamily: LmbE-like Family: LmbE-like Phyre2 PDB 3dfi chain A Region: 15 - 185 Aligned: 164 Modelled: 166 Confidence: 100.0% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:pseudoaglycone deacetylase dbv21; PDBTitle: the crystal structure of antimicrobial reagent a40926 pseudoaglycone2 deacetylase dbv21 Phyre2 PDB 1q7t chain A Region: 9 - 185 Aligned: 174 Modelled: 177 Confidence: 100.0% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein rv1170; PDBTitle: rv1170 (mshb) from mycobacterium tuberculosis Phyre2 PDB 3dfm chain A Region: 17 - 185 Aligned: 163 Modelled: 164 Confidence: 100.0% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:teicoplanin pseudoaglycone deacetylase orf2; PDBTitle: the crystal structure of the zinc inhibited form of2 teicoplanin deacetylase orf2 Phyre2 PDB 1q74 chain A Region: 15 - 185 Aligned: 168 Modelled: 171 Confidence: 100.0% Identity: 27% Fold: LmbE-like Superfamily: LmbE-like Family: LmbE-like Phyre2 PDB 1t9g chain R Region: 17 - 123 Aligned: 92 Modelled: 107 Confidence: 91.6% Identity: 13% PDB header:oxidoreductase, electron transport Chain: R: PDB Molecule:electron transfer flavoprotein alpha-subunit, PDBTitle: structure of the human mcad:etf complex Phyre2 PDB 3eyw chain A Region: 6 - 76 Aligned: 71 Modelled: 71 Confidence: 91.0% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff Phyre2 PDB 1efv chain A domain 1 Region: 17 - 123 Aligned: 92 Modelled: 107 Confidence: 90.9% Identity: 13% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: ETFP subunits Phyre2 PDB 1qrd chain A Region: 17 - 52 Aligned: 36 Modelled: 36 Confidence: 84.6% Identity: 19% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 1dxq chain A Region: 16 - 52 Aligned: 37 Modelled: 37 Confidence: 84.4% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 1d4a chain A Region: 16 - 52 Aligned: 37 Modelled: 37 Confidence: 81.5% Identity: 22% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 2qwx chain A domain 1 Region: 17 - 54 Aligned: 38 Modelled: 38 Confidence: 81.4% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 PDB 2r60 chain A Region: 17 - 60 Aligned: 39 Modelled: 44 Confidence: 80.7% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii Phyre2 PDB 1f8s chain A Region: 1 - 50 Aligned: 43 Modelled: 50 Confidence: 75.0% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate. Phyre2 PDB 3f2v chain A Region: 18 - 76 Aligned: 59 Modelled: 59 Confidence: 72.2% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. Phyre2 PDB 3ha2 chain B Region: 17 - 76 Aligned: 55 Modelled: 59 Confidence: 71.9% Identity: 11% PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a Phyre2 PDB 1o94 chain D Region: 18 - 123 Aligned: 89 Modelled: 104 Confidence: 71.9% Identity: 19% PDB header:electron transport Chain: D: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: ternary complex between trimethylamine dehydrogenase and2 electron transferring flavoprotein Phyre2 PDB 3ih5 chain A Region: 17 - 123 Aligned: 89 Modelled: 104 Confidence: 70.4% Identity: 19% PDB header:electron transport Chain: A: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: crystal structure of electron transfer flavoprotein alpha-2 subunit from bacteroides thetaiotaomicron Phyre2 PDB 1efp chain B Region: 38 - 114 Aligned: 70 Modelled: 77 Confidence: 70.4% Identity: 19% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: ETFP subunits Phyre2 1 c2ixdB_ 2 d1uana_ 3 c3dfiA_ 4 c1q7tA_ 5 c3dfmA_ 6 d1q74a_ 7 c1t9gR_ 8 c3eywA_ 9 d1efva1 10 d1qrda_ 11 d1dxqa_ 12 d1d4aa_ 13 d2qwxa1 14 c2r60A_ 15 c1f8sA_ 16 c3f2vA_ 17 c3ha2B_ 18 c1o94D_ 19 c3ih5A_ 20 d1efpb_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ixdB_ 100.0 26 PDB header:hydrolase Chain: B: PDB Molecule:lmbe-related protein; PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus 2 d1uana_ 100.0 27 Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like 3 c3dfiA_ 100.0 29 PDB header:hydrolase Chain: A: PDB Molecule:pseudoaglycone deacetylase dbv21; PDBTitle: the crystal structure of antimicrobial reagent a40926 pseudoaglycone2 deacetylase dbv21 4 c1q7tA_ 100.0 25 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein rv1170; PDBTitle: rv1170 (mshb) from mycobacterium tuberculosis 5 c3dfmA_ 100.0 29 PDB header:hydrolase Chain: A: PDB Molecule:teicoplanin pseudoaglycone deacetylase orf2; PDBTitle: the crystal structure of the zinc inhibited form of2 teicoplanin deacetylase orf2 6 d1q74a_ 100.0 27 Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like 7 c1t9gR_ 91.6 13 PDB header:oxidoreductase, electron transport Chain: R: PDB Molecule:electron transfer flavoprotein alpha-subunit, PDBTitle: structure of the human mcad:etf complex 8 c3eywA_ 91.0 13 PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff 9 d1efva1 90.9 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 10 d1qrda_ 84.6 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 11 d1dxqa_ 84.4 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 12 d1d4aa_ 81.5 22 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 13 d2qwxa1 81.4 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 14 c2r60A_ 80.7 26 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 15 c1f8sA_ 75.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate. 16 c3f2vA_ 72.2 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. 17 c3ha2B_ 71.9 11 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-quinone reductase; PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a 18 c1o94D_ 71.9 19 PDB header:electron transport Chain: D: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: ternary complex between trimethylamine dehydrogenase and2 electron transferring flavoprotein 19 c3ih5A_ 70.4 19 PDB header:electron transport Chain: A: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: crystal structure of electron transfer flavoprotein alpha-2 subunit from bacteroides thetaiotaomicron 20 d1efpb_ 70.4 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 21 c2e1mA_ not modelled 64.5 29 PDB header:oxidoreductase Chain: A: PDB Molecule:l-glutamate oxidase; PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6 22 d1v4va_ not modelled 58.8 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 23 c3dzcA_ not modelled 58.2 15 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 24 d3clsc1 not modelled 58.0 23 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 25 c3ot5D_ not modelled 56.2 15 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes 26 d1f0ka_ not modelled 55.8 25 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 27 d3clsd1 not modelled 54.1 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 28 d1reoa1 not modelled 42.8 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 29 d1vb3a1 not modelled 40.6 16 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 30 c3jx9B_ not modelled 40.1 14 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of putative phosphoheptose isomerase2 (yp_001815198.1) from exiguobacterium sp. 255-15 at 1.95 a resolution 31 c3iuuA_ not modelled 39.5 12 PDB header:hydrolase Chain: A: PDB Molecule:putative metallopeptidase; PDBTitle: crystal structure of putative metallopeptidase (yp_676511.1) from2 mesorhizobium sp. bnc1 at 2.13 a resolution 32 d1o94c_ not modelled 38.3 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 33 c2b9yA_ not modelled 35.3 34 PDB header:isomerase Chain: A: PDB Molecule:putative aminooxidase; PDBTitle: crystal structure of cla-producing fatty acid isomerase2 from p. acnes 34 c2cmgA_ not modelled 34.9 20 PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori 35 c3lteH_ not modelled 32.9 23 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 36 d1gph11 not modelled 31.8 14 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 37 d1ecfa1 not modelled 31.4 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 38 c3qi7A_ not modelled 30.9 19 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 39 c2iyaB_ not modelled 29.4 8 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 40 d2d59a1 not modelled 28.0 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 41 c3dezA_ not modelled 27.0 19 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 streptococcus mutans 42 c3c4vB_ not modelled 27.0 23 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 43 d2acva1 not modelled 26.0 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 44 c1ps9A_ not modelled 25.5 20 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 45 c3ia7A_ not modelled 25.3 18 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 46 d1fmfa_ not modelled 24.6 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 47 c2jb1B_ not modelled 23.8 17 PDB header:oxidoreductase Chain: B: PDB Molecule:l-amino acid oxidase; PDBTitle: the l-amino acid oxidase from rhodococcus opacus in complex2 with l-alanine 48 d1k68a_ not modelled 22.9 19 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 49 c2xagA_ not modelled 22.4 27 PDB header:transcription Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine 50 c2v1dA_ not modelled 22.4 27 PDB header:oxidoreductase/repressor Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition 51 c3rpeA_ not modelled 22.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 52 c2hkoA_ not modelled 22.2 27 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1 53 c3d0qB_ not modelled 22.1 8 PDB header:transferase Chain: B: PDB Molecule:protein calg3; PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222 54 c2hmaA_ not modelled 21.5 8 PDB header:transferase Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)- PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae 55 c3q9cF_ not modelled 21.5 8 PDB header:hydrolase Chain: F: PDB Molecule:acetylpolyamine amidohydrolase; PDBTitle: crystal structure of h159a apah complexed with n8-acetylspermidine 56 d1a9xa3 not modelled 21.4 24 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 57 d2aeea1 not modelled 21.2 24 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 58 c3menC_ not modelled 20.9 8 PDB header:hydrolase Chain: C: PDB Molecule:acetylpolyamine aminohydrolase; PDBTitle: crystal structure of acetylpolyamine aminohydrolase from burkholderia2 pseudomallei, iodide soak 59 c1k97A_ not modelled 20.8 15 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline 60 d1k66a_ not modelled 19.4 18 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 61 c3devB_ not modelled 19.1 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:sh1221; PDBTitle: crystal structure of sh1221 protein from staphylococcus haemolyticus,2 northeast structural genomics consortium target shr87 62 c2yxbA_ not modelled 19.0 12 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 63 c2bi8A_ not modelled 18.9 38 PDB header:isomerase Chain: A: PDB Molecule:udp-galactopyranose mutase; PDBTitle: udp-galactopyranose mutase from klebsiella pneumoniae with2 reduced fad 64 c3m3hA_ not modelled 17.4 18 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.75 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase from bacillus anthracis str. 'ames3 ancestor' 65 d2iida1 not modelled 17.4 30 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 66 d1ir6a_ not modelled 17.3 21 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Exonuclease RecJ 67 c1ir6A_ not modelled 17.3 21 PDB header:hydrolase Chain: A: PDB Molecule:exonuclease recj; PDBTitle: crystal structure of exonuclease recj bound to manganese 68 d1ybha3 not modelled 17.2 14 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 69 d1p3da1 not modelled 17.2 23 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 70 c2gwrA_ not modelled 16.8 24 PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis 71 d2ji7a3 not modelled 16.8 19 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 72 d2c1ha1 not modelled 16.7 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 73 d1y0ba1 not modelled 16.7 26 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 74 c3enkB_ not modelled 16.6 15 PDB header:isomerase Chain: B: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: 1.9a crystal structure of udp-glucose 4-epimerase from2 burkholderia pseudomallei 75 c3q9sA_ not modelled 16.2 19 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans 76 c2xhyD_ not modelled 16.2 8 PDB header:hydrolase Chain: D: PDB Molecule:6-phospho-beta-glucosidase bgla; PDBTitle: crystal structure of e.coli bgla 77 d2pw6a1 not modelled 16.1 20 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 78 c3iaaB_ not modelled 15.8 15 PDB header:transferase Chain: B: PDB Molecule:calg2; PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form 79 d1k92a1 not modelled 15.6 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 80 c3qomA_ not modelled 15.4 8 PDB header:hydrolase Chain: A: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: crystal structure of 6-phospho-beta-glucosidase from lactobacillus2 plantarum 81 d1mzva_ not modelled 15.4 24 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 82 c2dy0A_ not modelled 14.8 19 PDB header:transferase Chain: A: PDB Molecule:adenine phosphoribosyltransferase; PDBTitle: crystal structure of project jw0458 from escherichia coli 83 d2afwa1 not modelled 14.6 21 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Glutaminyl-peptide cyclotransferase-like 84 d1seza1 not modelled 14.3 33 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 85 c3ai0A_ not modelled 14.0 18 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: crystal structure of beta-glucosidase from termite neotermes2 koshunensis in complex with para-nitrophenyl-beta-d-glucopyranoside 86 d1o57a2 not modelled 13.9 18 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 87 d1xlma_ not modelled 13.8 10 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 88 c1jscA_ not modelled 13.7 13 PDB header:lyase Chain: A: PDB Molecule:acetohydroxy-acid synthase; PDBTitle: crystal structure of the catalytic subunit of yeast2 acetohydroxyacid synthase: a target for herbicidal3 inhibitors 89 c2p6pB_ not modelled 13.6 21 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 90 c1ecjB_ not modelled 13.6 17 PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer 91 d1efpa1 not modelled 13.4 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 92 d1e4mm_ not modelled 13.3 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 93 c3khtA_ not modelled 12.8 20 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator from hahella chejuensis 94 d1c0pa1 not modelled 12.7 24 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:D-aminoacid oxidase, N-terminal domain 95 c2c4kD_ not modelled 12.5 30 PDB header:regulatory protein Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase- PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39) 96 c2jf7B_ not modelled 12.4 15 PDB header:hydrolase Chain: B: PDB Molecule:strictosidine-o-beta-d-glucosidase; PDBTitle: structure of strictosidine glucosidase 97 c1c0iA_ not modelled 12.3 27 PDB header:oxidoreductase Chain: A: PDB Molecule:d-amino acid oxidase; PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules 98 d1bxca_ not modelled 12.1 13 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 99 d1dkua2 not modelled 12.0 24 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0