Secondary structure and disorder prediction

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Sequence		M	K	L	V	T	V	I	I	K	P	F	K	L	E	D	V	R	E	A	L	S	S	I	G	I	Q	G	L	T	V	T	E	V	K	G	F	G	R	Q	K	G	H	A	E	L	Y	R	G	A	E	Y	S	V	N	F	L	P	K	V	K
Secondary structure
SS confidence
Disorder		?	?																																						?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Sequence		I	D	V	A	I	A	D	D	Q	L	D	E	V	I	D	I	V	S	K	A	A	Y	T	G	K	I	G	D	G	K	I	F	V	A	E	L	Q	R	V	I	R	I	R	T	G	E	A	D	E	A	A	L
Secondary structure
SS confidence
Disorder																											?																					?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ns1 chain B domain 1 Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 99% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 3mhy chain C Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 68% PDB header:signaling protein Chain: C: PDB Molecule:pii-like protein pz; PDBTitle: a new pii protein structure Phyre2 PDB 1qy7 chain A Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 56% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 2pii chain A Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 68% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 1vfj chain A Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 40% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 2rd5 chain D Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 45% PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana Phyre2 PDB 3ncp chain D Region: 1 - 112 Aligned: 99 Modelled: 112 Confidence: 100.0% Identity: 46% PDB header:signaling protein Chain: D: PDB Molecule:nitrogen regulatory protein p-ii (glnb-2); PDBTitle: glnk2 from archaeoglobus fulgidus Phyre2 PDB 1hwu chain A Region: 1 - 112 Aligned: 99 Modelled: 112 Confidence: 100.0% Identity: 63% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 1ul3 chain A Region: 1 - 112 Aligned: 95 Modelled: 95 Confidence: 100.0% Identity: 55% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 2j9d chain G Region: 1 - 112 Aligned: 99 Modelled: 112 Confidence: 100.0% Identity: 53% PDB header:membrane transport Chain: G: PDB Molecule:hypothetical nitrogen regulatory pii-like PDBTitle: structure of glnk1 with bound effectors indicates2 regulatory mechanism for ammonia uptake Phyre2 PDB 3bzq chain A Region: 1 - 112 Aligned: 97 Modelled: 97 Confidence: 100.0% Identity: 49% PDB header:signaling protein/transcription Chain: A: PDB Molecule:nitrogen regulatory protein p-ii; PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis Phyre2 PDB 3o8w chain A Region: 1 - 111 Aligned: 103 Modelled: 111 Confidence: 100.0% Identity: 50% PDB header:signaling protein Chain: A: PDB Molecule:nitrogen regulatory protein p-ii (glnb-1); PDBTitle: archaeoglobus fulgidus glnk1 Phyre2 PDB 3l7p chain A Region: 1 - 102 Aligned: 82 Modelled: 86 Confidence: 99.9% Identity: 48% PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans Phyre2 PDB 2cz4 chain A domain 1 Region: 1 - 107 Aligned: 93 Modelled: 107 Confidence: 99.8% Identity: 17% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 3ce8 chain A Region: 2 - 102 Aligned: 84 Modelled: 101 Confidence: 98.5% Identity: 14% PDB header:unknown function Chain: A: PDB Molecule:putative pii-like nitrogen regulatory protein; PDBTitle: crystal structure of a duf3240 family protein (sbal_0098) from2 shewanella baltica os155 at 2.40 a resolution Phyre2 PDB 3m05 chain A Region: 2 - 101 Aligned: 83 Modelled: 83 Confidence: 98.2% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pepe_1480; PDBTitle: the crystal structure of a functionally unknown protein2 pepe_1480 from pediococcus pentosaceus atcc 25745 Phyre2 PDB 1o51 chain A Region: 2 - 97 Aligned: 75 Modelled: 80 Confidence: 96.6% Identity: 21% Fold: Ferredoxin-like Superfamily: GlnB-like Family: DUF190/COG1993 Phyre2 PDB 2dcl chain B Region: 13 - 97 Aligned: 66 Modelled: 71 Confidence: 95.3% Identity: 26% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical upf0166 protein ph1503; PDBTitle: structure of ph1503 protein from pyrococcus horikoshii ot3 Phyre2 PDB 2gx8 chain B Region: 2 - 95 Aligned: 85 Modelled: 94 Confidence: 92.6% Identity: 25% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3 Phyre2 PDB 2gx8 chain A domain 1 Region: 2 - 95 Aligned: 85 Modelled: 94 Confidence: 90.7% Identity: 25% Fold: NIF3 (NGG1p interacting factor 3)-like Superfamily: NIF3 (NGG1p interacting factor 3)-like Family: NIF3 (NGG1p interacting factor 3)-like Phyre2 1 d2ns1b1 2 c3mhyC_ 3 d1qy7a_ 4 d2piia_ 5 d1vfja_ 6 c2rd5D_ 7 c3ncpD_ 8 d1hwua_ 9 d1ul3a_ 10 c2j9dG_ 11 c3bzqA_ 12 c3o8wA_ 13 c3l7pA_ 14 d2cz4a1 15 c3ce8A_ 16 c3m05A_ 17 d1o51a_ 18 c2dclB_ 19 c2gx8B_ 20 d2gx8a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ns1b1 100.0 99 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 2 c3mhyC_ 100.0 68 PDB header:signaling protein Chain: C: PDB Molecule:pii-like protein pz; PDBTitle: a new pii protein structure 3 d1qy7a_ 100.0 56 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 4 d2piia_ 100.0 68 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 5 d1vfja_ 100.0 40 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 6 c2rd5D_ 100.0 45 PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 7 c3ncpD_ 100.0 46 PDB header:signaling protein Chain: D: PDB Molecule:nitrogen regulatory protein p-ii (glnb-2); PDBTitle: glnk2 from archaeoglobus fulgidus 8 d1hwua_ 100.0 63 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 9 d1ul3a_ 100.0 55 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 10 c2j9dG_ 100.0 53 PDB header:membrane transport Chain: G: PDB Molecule:hypothetical nitrogen regulatory pii-like PDBTitle: structure of glnk1 with bound effectors indicates2 regulatory mechanism for ammonia uptake 11 c3bzqA_ 100.0 49 PDB header:signaling protein/transcription Chain: A: PDB Molecule:nitrogen regulatory protein p-ii; PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis 12 c3o8wA_ 100.0 50 PDB header:signaling protein Chain: A: PDB Molecule:nitrogen regulatory protein p-ii (glnb-1); PDBTitle: archaeoglobus fulgidus glnk1 13 c3l7pA_ 99.9 48 PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans 14 d2cz4a1 99.8 17 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 15 c3ce8A_ 98.5 14 PDB header:unknown function Chain: A: PDB Molecule:putative pii-like nitrogen regulatory protein; PDBTitle: crystal structure of a duf3240 family protein (sbal_0098) from2 shewanella baltica os155 at 2.40 a resolution 16 c3m05A_ 98.2 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pepe_1480; PDBTitle: the crystal structure of a functionally unknown protein2 pepe_1480 from pediococcus pentosaceus atcc 25745 17 d1o51a_ 96.6 21 Fold:Ferredoxin-like Superfamily:GlnB-like Family:DUF190/COG1993 18 c2dclB_ 95.3 26 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical upf0166 protein ph1503; PDBTitle: structure of ph1503 protein from pyrococcus horikoshii ot3 19 c2gx8B_ 92.6 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3 20 d2gx8a1 90.7 25 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 21 c2nydB_ not modelled 86.6 19 PDB header:unknown function Chain: B: PDB Molecule:upf0135 protein sa1388; PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388 22 d1nh8a2 not modelled 84.3 9 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 23 c3hluA_ not modelled 77.5 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf2179; PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 duf2179 from eubacterium ventriosum 24 c2vd3B_ not modelled 75.3 12 PDB header:transferase Chain: B: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: the structure of histidine inhibited hisg from2 methanobacterium thermoautotrophicum 25 c1nh7A_ not modelled 71.7 9 PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: atp phosphoribosyltransferase (atp-prtase) from mycobacterium2 tuberculosis 26 d1h3da2 not modelled 60.3 13 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 27 c3dfeA_ not modelled 59.8 25 PDB header:signaling protein Chain: A: PDB Molecule:putative pii-like signaling protein; PDBTitle: crystal structure of a putative pii-like signaling protein2 (yp_323533.1) from anabaena variabilis atcc 29413 at 2.35 a3 resolution 28 c3rrkA_ not modelled 47.1 16 PDB header:proton transport Chain: A: PDB Molecule:v-type atpase 116 kda subunit; PDBTitle: crystal structure of the cytoplasmic n-terminal domain of subunit i,2 homolog of subunit a, of v-atpase 29 c1q1kA_ not modelled 44.0 13 PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: structure of atp-phosphoribosyltransferase from e. coli complexed with2 pr-atp 30 c2f06B_ not modelled 32.5 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 31 c2cz9A_ not modelled 26.3 14 PDB header:transferase Chain: A: PDB Molecule:probable galactokinase; PDBTitle: crystal structure of galactokinase from pyrococcus horikoshi 32 d2hmfa2 not modelled 24.9 20 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 33 d1w1oa1 not modelled 24.4 16 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Cytokinin dehydrogenase 1 34 c2zvyB_ not modelled 23.5 12 PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii) 35 c2hk3A_ not modelled 22.4 10 PDB header:lyase Chain: A: PDB Molecule:diphosphomevalonate decarboxylase; PDBTitle: crystal structure of mevalonate diphosphate decarboxylase2 from staphylococcus aureus (orthorhombic form) 36 d1zhva2 not modelled 21.2 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 37 d2j0wa3 not modelled 19.3 4 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 38 c2dtjA_ not modelled 19.0 15 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: crystal structure of regulatory subunit of aspartate kinase2 from corynebacterium glutamicum 39 c3mahA_ not modelled 19.0 13 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83. 40 d2f06a2 not modelled 17.4 28 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 41 d1wjwa_ not modelled 17.2 30 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 42 c2nuxB_ not modelled 15.4 19 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution 43 d1v6za2 not modelled 15.3 23 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 44 d2cdqa3 not modelled 15.3 24 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 45 d1x8da1 not modelled 14.3 17 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like 46 c3fluD_ not modelled 13.4 19 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis 47 c2qlxA_ not modelled 13.3 11 PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose 48 c2qlwA_ not modelled 13.3 11 PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum 49 c1zr6A_ not modelled 12.4 27 PDB header:oxidoreductase Chain: A: PDB Molecule:glucooligosaccharide oxidase; PDBTitle: the crystal structure of an acremonium strictum glucooligosaccharide2 oxidase reveals a novel flavinylation 50 c3dz1A_ not modelled 12.4 14 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 1.87a resolution 51 c3nuhB_ not modelled 12.1 18 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function 52 c3n2xB_ not modelled 11.8 19 PDB header:lyase Chain: B: PDB Molecule:uncharacterized protein yage; PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate 53 d1vi2a2 not modelled 11.8 17 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 54 d2a5la1 not modelled 11.0 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 55 c3nnqA_ not modelled 11.0 12 PDB header:viral protein Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3 56 c2hfvA_ not modelled 10.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90. 57 c2yxgD_ not modelled 10.3 19 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) 58 c2re1A_ not modelled 10.2 18 PDB header:transferase Chain: A: PDB Molecule:aspartokinase, alpha and beta subunits; PDBTitle: crystal structure of aspartokinase alpha and beta subunits 59 d1v7ra_ not modelled 10.0 32 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 60 c3lerA_ not modelled 10.0 20 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168 61 d1mwza_ not modelled 9.4 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 62 c2y3rC_ not modelled 9.3 21 PDB header:oxidoreductase Chain: C: PDB Molecule:taml; PDBTitle: structure of the tirandamycin-bound fad-dependent2 tirandamycin oxidase taml in p21 space group 63 d1p77a2 not modelled 9.3 21 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 64 d1fx0a2 not modelled 9.2 25 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 65 d2i0ka2 not modelled 9.0 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 66 d1p5dx4 not modelled 9.0 23 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 67 d1nvta2 not modelled 9.0 33 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 68 c3pueA_ not modelled 8.8 15 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution 69 d1nxza2 not modelled 8.8 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 70 c2zodB_ not modelled 8.5 17 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus 71 c2gs8A_ not modelled 8.4 17 PDB header:lyase Chain: A: PDB Molecule:mevalonate pyrophosphate decarboxylase; PDBTitle: structure of mevalonate pyrophosphate decarboxylase from streptococcus2 pyogenes 72 c1wveB_ not modelled 8.4 12 PDB header:oxidoreductase Chain: B: PDB Molecule:4-cresol dehydrogenase [hydroxylating] PDBTitle: p-cresol methylhydroxylase: alteration of the structure of2 the flavoprotein subunit upon its binding to the3 cytochrome subunit 73 d1ny5a2 not modelled 8.3 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 74 c1f0xA_ not modelled 8.3 9 PDB header:oxidoreductase Chain: A: PDB Molecule:d-lactate dehydrogenase; PDBTitle: crystal structure of d-lactate dehydrogenase, a peripheral2 membrane respiratory enzyme. 75 c2ipiD_ not modelled 8.3 11 PDB header:oxidoreductase Chain: D: PDB Molecule:aclacinomycin oxidoreductase (aknox); PDBTitle: crystal structure of aclacinomycin oxidoreductase 76 d1nyta2 not modelled 8.3 25 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 77 c3b4uB_ not modelled 8.3 14 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58 78 c3lciA_ not modelled 8.1 19 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 79 d1sqsa_ not modelled 8.0 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 80 c2bvfA_ not modelled 8.0 22 PDB header:oxidase Chain: A: PDB Molecule:6-hydroxy-d-nicotine oxidase; PDBTitle: crystal structure of 6-hydoxy-d-nicotine oxidase from2 arthrobacter nicotinovorans. crystal form 3 (p1) 81 c2otnB_ not modelled 8.0 29 PDB header:isomerase Chain: B: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of the catalytically active form of diaminopimelate2 epimerase from bacillus anthracis 82 c1z85B_ not modelled 7.9 14 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution 83 c3pm9A_ not modelled 7.9 13 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution 84 c3cprB_ not modelled 7.6 17 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthetase; PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution 85 c3daqB_ not modelled 7.6 12 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus 86 c3popD_ not modelled 7.5 21 PDB header:oxidoreductase Chain: D: PDB Molecule:gilr oxidase; PDBTitle: the crystal structure of gilr, an oxidoreductase that catalyzes the2 terminal step of gilvocarcin biosynthesis 87 c2hfuB_ not modelled 7.5 21 PDB header:transferase Chain: B: PDB Molecule:mevalonate kinase, putative; PDBTitle: crystal structure of l. major mevalonate kinase in complex2 with r-mevalonate 88 d1vhka2 not modelled 7.3 17 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 89 c2zhoB_ not modelled 7.2 22 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of the regulatory subunit of aspartate2 kinase from thermus thermophilus (ligand free form) 90 c2cx8B_ not modelled 7.2 23 PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah) 91 c2wdwB_ not modelled 7.1 21 PDB header:oxidoreductase Chain: B: PDB Molecule:putative hexose oxidase; PDBTitle: the native crystal structure of the primary hexose oxidase (2 dbv29) in antibiotic a40926 biosynthesis 92 c1zhvA_ not modelled 7.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu0741; PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8. 93 c3oonA_ not modelled 7.0 20 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 94 c3fwaA_ not modelled 7.0 21 PDB header:flavoprotein Chain: A: PDB Molecule:reticuline oxidase; PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline 95 d1uxya1 not modelled 6.9 18 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain 96 d1xxxa1 not modelled 6.9 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 97 c2apnA_ not modelled 6.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hi1723; PDBTitle: hi1723 solution structure 98 c1i19B_ not modelled 6.7 13 PDB header:oxidoreductase Chain: B: PDB Molecule:cholesterol oxidase; PDBTitle: crystal structure of cholesterol oxidase from b.sterolicum 99 d1e8ga2 not modelled 6.5 18 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0