Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	H	I	R	I	E	K	G	T	G	G	W	G	G	P	L	E	L	K	A	T	P	G	K	K	I	V	Y	I	T	A	G	T	R	P	A	I	V	D	K	L	A	Q	L	T	G	W	Q	A	I	D	G	F	K	E	G	E	P	A
Secondary structure
SS confidence
Disorder		?	?	?					?	?																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	A	E	I	G	V	A	V	I	D	C	G	G	T	L	R	C	G	I	Y	P	K	R	R	I	P	T	I	N	I	H	S	T	G	K	S	G	P	L	A	Q	Y	I	V	E	D	I	Y	V	S	G	V	K	E	E	N	I	T	V	V
Secondary structure
SS confidence
Disorder																																?	?	?		?																								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	D	A	T	P	Q	P	S	S	V	G	R	D	Y	D	T	S	K	K	I	T	E	Q	S	D	G	L	L	A	K	V	G	M	G	M	G	S	T	V	A	V	L	F	Q	S	G	R	D	T	I	D	T	V	L	K	T	I	L	P	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	A	F	V	S	A	L	I	G	I	I	M	A	S	G	L	G	D	W	I	A	H	G	L	A	P	L	A	S	H	P	L	G	L	V	M	L	A	L	I	C	S	F	P	L	L	S	P	F	L	G	P	G	A	V	I	A	Q	V	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	V	L	I	G	V	Q	I	G	L	G	N	I	P	P	H	L	A	L	P	A	L	F	A	I	N	A	Q	A	A	C	D	F	I	P	V	G	L	S	L	A	E	A	R	Q	D	T	V	R	V	G	V	P	S	V	L	V	S	R	F
Secondary structure
SS confidence
Disorder									?																																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Sequence		L	T	G	A	P	T	V	L	I	A	W	F	V	S	G	F	I	Y	Q
Secondary structure
SS confidence
Disorder															?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2hrv chain A Region: 70 - 77 Aligned: 8 Modelled: 8 Confidence: 47.0% Identity: 75% Fold: Trypsin-like serine proteases Superfamily: Trypsin-like serine proteases Family: Viral cysteine protease of trypsin fold Phyre2 PDB 1z8r chain A Region: 70 - 77 Aligned: 8 Modelled: 8 Confidence: 43.3% Identity: 75% PDB header:hydrolase Chain: A: PDB Molecule:coxsackievirus b4 polyprotein; PDBTitle: 2a cysteine proteinase from human coxsackievirus b4 (strain2 jvb / benschoten / new york / 51) Phyre2 PDB 1bup chain A domain 2 Region: 61 - 100 Aligned: 39 Modelled: 40 Confidence: 34.2% Identity: 31% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 1jce chain A domain 2 Region: 59 - 94 Aligned: 36 Modelled: 36 Confidence: 23.3% Identity: 28% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 2he4 chain A Region: 3 - 83 Aligned: 78 Modelled: 81 Confidence: 23.3% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf2; PDBTitle: the crystal structure of the second pdz domain of human2 nherf-2 (slc9a3r2) interacting with a mode 1 pdz binding3 motif Phyre2 PDB 3dgs chain A Region: 266 - 284 Aligned: 19 Modelled: 19 Confidence: 21.5% Identity: 32% PDB header:viral protein Chain: A: PDB Molecule:coat protein a; PDBTitle: changing the determinants of protein stability from2 covalent to non-covalent interactions by in-vitro3 evolution: a structural and energetic analysis Phyre2 PDB 3nvb chain A Region: 66 - 105 Aligned: 40 Modelled: 40 Confidence: 21.0% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate Phyre2 PDB 2hf3 chain A domain 1 Region: 61 - 78 Aligned: 18 Modelled: 18 Confidence: 16.8% Identity: 33% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 1bxl chain A Region: 152 - 202 Aligned: 51 Modelled: 51 Confidence: 16.1% Identity: 22% Fold: Toxins' membrane translocation domains Superfamily: Bcl-2 inhibitors of programmed cell death Family: Bcl-2 inhibitors of programmed cell death Phyre2 PDB 2v90 chain E Region: 4 - 83 Aligned: 79 Modelled: 80 Confidence: 15.6% Identity: 15% PDB header:protein-binding Chain: E: PDB Molecule:pdz domain-containing protein 3; PDBTitle: crystal structure of the 3rd pdz domain of intestine- and2 kidney-enriched pdz domain ikepp (pdzd3) Phyre2 PDB 1ysg chain A domain 1 Region: 152 - 202 Aligned: 51 Modelled: 51 Confidence: 14.6% Identity: 22% Fold: Toxins' membrane translocation domains Superfamily: Bcl-2 inhibitors of programmed cell death Family: Bcl-2 inhibitors of programmed cell death Phyre2 PDB 1be9 chain A Region: 3 - 82 Aligned: 78 Modelled: 80 Confidence: 14.3% Identity: 18% Fold: PDZ domain-like Superfamily: PDZ domain-like Family: PDZ domain Phyre2 PDB 2c4k chain A domain 1 Region: 24 - 68 Aligned: 44 Modelled: 45 Confidence: 14.3% Identity: 11% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosylpyrophosphate synthetase-like Phyre2 PDB 2jr3 chain A Region: 9 - 19 Aligned: 11 Modelled: 11 Confidence: 13.6% Identity: 55% PDB header:antimicrobial protein Chain: A: PDB Molecule:pelovaterin; PDBTitle: antibacterial peptide from eggshell matrix: structure and2 self-assembly of beta-defensin like peptide from the3 chinese soft-shelled turtle eggshell Phyre2 PDB 1t95 chain A domain 3 Region: 27 - 50 Aligned: 24 Modelled: 22 Confidence: 13.6% Identity: 21% Fold: Ferredoxin-like Superfamily: EF-G C-terminal domain-like Family: Hypothetical protein AF0491, C-terminal domain Phyre2 PDB 2nac chain A domain 2 Region: 62 - 98 Aligned: 37 Modelled: 37 Confidence: 13.3% Identity: 19% Fold: Flavodoxin-like Superfamily: Formate/glycerate dehydrogenase catalytic domain-like Family: Formate/glycerate dehydrogenases, substrate-binding domain Phyre2 PDB 1p9q chain C domain 3 Region: 27 - 50 Aligned: 24 Modelled: 24 Confidence: 12.9% Identity: 21% Fold: Ferredoxin-like Superfamily: EF-G C-terminal domain-like Family: Hypothetical protein AF0491, C-terminal domain Phyre2 PDB 2e8a chain A domain 2 Region: 61 - 74 Aligned: 14 Modelled: 14 Confidence: 12.9% Identity: 36% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 2vya chain B Region: 70 - 103 Aligned: 34 Modelled: 34 Confidence: 12.8% Identity: 35% PDB header:hydrolase Chain: B: PDB Molecule:fatty-acid amide hydrolase 1; PDBTitle: crystal structure of fatty acid amide hydrolase conjugated2 with the drug-like inhibitor pf-750 Phyre2 PDB 1g0d chain A Region: 47 - 86 Aligned: 28 Modelled: 40 Confidence: 12.2% Identity: 39% PDB header:transferase Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: crystal structure of red sea bream transglutaminase Phyre2 1 d2hrva_ 2 c1z8rA_ 3 d1bupa2 4 d1jcea2 5 c2he4A_ 6 c3dgsA_ 7 c3nvbA_ 8 d2hf3a1 9 d1bxla_ 10 c2v90E_ 11 d1ysga1 12 d1be9a_ 13 d2c4ka1 14 c2jr3A_ 15 d1t95a3 16 d2naca2 17 d1p9qc3 18 d2e8aa2 19 c2vyaB_ 20 c1g0dA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2hrva_ 47.0 75 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold 2 c1z8rA_ 43.3 75 PDB header:hydrolase Chain: A: PDB Molecule:coxsackievirus b4 polyprotein; PDBTitle: 2a cysteine proteinase from human coxsackievirus b4 (strain2 jvb / benschoten / new york / 51) 3 d1bupa2 34.2 31 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 4 d1jcea2 23.3 28 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 5 c2he4A_ 23.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf2; PDBTitle: the crystal structure of the second pdz domain of human2 nherf-2 (slc9a3r2) interacting with a mode 1 pdz binding3 motif 6 c3dgsA_ 21.5 32 PDB header:viral protein Chain: A: PDB Molecule:coat protein a; PDBTitle: changing the determinants of protein stability from2 covalent to non-covalent interactions by in-vitro3 evolution: a structural and energetic analysis 7 c3nvbA_ 21.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate 8 d2hf3a1 16.8 33 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 9 d1bxla_ 16.1 22 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 10 c2v90E_ 15.6 15 PDB header:protein-binding Chain: E: PDB Molecule:pdz domain-containing protein 3; PDBTitle: crystal structure of the 3rd pdz domain of intestine- and2 kidney-enriched pdz domain ikepp (pdzd3) 11 d1ysga1 14.6 22 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 12 d1be9a_ 14.3 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 13 d2c4ka1 14.3 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 14 c2jr3A_ 13.6 55 PDB header:antimicrobial protein Chain: A: PDB Molecule:pelovaterin; PDBTitle: antibacterial peptide from eggshell matrix: structure and2 self-assembly of beta-defensin like peptide from the3 chinese soft-shelled turtle eggshell 15 d1t95a3 13.6 21 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 16 d2naca2 13.3 19 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 17 d1p9qc3 12.9 21 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 18 d2e8aa2 12.9 36 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 19 c2vyaB_ 12.8 35 PDB header:hydrolase Chain: B: PDB Molecule:fatty-acid amide hydrolase 1; PDBTitle: crystal structure of fatty acid amide hydrolase conjugated2 with the drug-like inhibitor pf-750 20 c1g0dA_ 12.2 39 PDB header:transferase Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: crystal structure of red sea bream transglutaminase 21 d1q59a_ not modelled 11.4 20 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 22 d1dkua1 not modelled 11.3 12 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 23 d1x6ma_ not modelled 11.1 44 Fold:Mss4-like Superfamily:Mss4-like Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa 24 c2d90A_ not modelled 10.9 22 PDB header:protein binding Chain: A: PDB Molecule:pdz domain containing protein 1; PDBTitle: solution structure of the third pdz domain of pdz domain2 containing protein 1 25 c1dkrB_ not modelled 10.8 13 PDB header:transferase Chain: B: PDB Molecule:phosphoribosyl pyrophosphate synthetase; PDBTitle: crystal structures of bacillus subtilis phosphoribosylpyrophosphate2 synthetase: molecular basis of allosteric inhibition and activation. 26 d1pbya2 not modelled 10.5 29 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 27 c1l9mB_ not modelled 10.5 32 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 28 c3g9bA_ not modelled 10.5 11 PDB header:transferase Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide-protein PDBTitle: crystal structure of reduced ost6l 29 c3pk1A_ not modelled 10.5 11 PDB header:apoptosis/apoptosis regulator Chain: A: PDB Molecule:induced myeloid leukemia cell differentiation protein mcl- PDBTitle: crystal structure of mcl-1 in complex with the baxbh3 domain 30 d3eeqa2 not modelled 10.1 11 Fold:CbiG N-terminal domain-like Superfamily:CbiG N-terminal domain-like Family:CbiG N-terminal domain-like 31 d1g5ma_ not modelled 9.9 20 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 32 d1zy3a1 not modelled 9.9 22 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 33 d2ponb1 not modelled 9.9 22 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 34 c2k2wA_ not modelled 9.5 46 PDB header:cell cycle Chain: A: PDB Molecule:recombination and dna repair protein; PDBTitle: second brct domain of nbs1 35 c2dazA_ not modelled 9.5 12 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the 7th pdz domain of inad-like2 protein 36 d1wmaa1 not modelled 9.4 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 37 c2yv6A_ not modelled 9.4 22 PDB header:apoptosis Chain: A: PDB Molecule:bcl-2 homologous antagonist/killer; PDBTitle: crystal structure of human bcl-2 family protein bak 38 d1o0la_ not modelled 9.1 24 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 39 d1f16a_ not modelled 9.0 13 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 40 d1q5xa_ not modelled 9.0 40 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 41 c3qbrA_ not modelled 8.8 13 PDB header:apoptosis Chain: A: PDB Molecule:sjchgc06286 protein; PDBTitle: bakbh3 in complex with sja 42 d1ln4a_ not modelled 8.8 29 Fold:IF3-like Superfamily:YhbY-like Family:YhbY-like 43 d1ul1x1 not modelled 8.6 11 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 44 d1n7ea_ not modelled 8.5 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 45 c3q87A_ not modelled 8.3 67 PDB header:transferase activator/transferase Chain: A: PDB Molecule:putative uncharacterized protein ecu08_1170; PDBTitle: structure of eukaryotic translation termination complex2 methyltransferase mtq2-trm112 46 d1l0wa2 not modelled 8.1 15 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 47 d2i7pa2 not modelled 8.1 8 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 48 d1k8ka1 not modelled 8.0 33 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 49 d1q18a1 not modelled 8.0 25 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 50 d1jmxa2 not modelled 8.0 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 51 d1l8wa_ not modelled 7.7 8 Fold:Variable surface antigen VlsE Superfamily:Variable surface antigen VlsE Family:Variable surface antigen VlsE 52 c1l8wA_ not modelled 7.7 8 PDB header:immune system Chain: A: PDB Molecule:vlse1; PDBTitle: crystal structure of lyme disease variable surface antigen2 vlse of borrelia burgdorferi 53 c2nacA_ not modelled 7.6 19 PDB header:oxidoreductase(aldehyde(d),nad+(a)) Chain: A: PDB Molecule:nad-dependent formate dehydrogenase; PDBTitle: high resolution structures of holo and apo formate dehydrogenase 54 d1roda_ not modelled 7.6 24 Fold:IL8-like Superfamily:Interleukin 8-like chemokines Family:Interleukin 8-like chemokines 55 d1mt5a_ not modelled 7.4 41 Fold:Amidase signature (AS) enzymes Superfamily:Amidase signature (AS) enzymes Family:Amidase signature (AS) enzymes 56 c2egkC_ not modelled 7.4 13 PDB header:protein binding Chain: C: PDB Molecule:general receptor for phosphoinositides 1- PDBTitle: crystal structure of tamalin pdz-intrinsic ligand fusion2 protein 57 d1dkgd2 not modelled 7.3 56 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 58 d1c0aa2 not modelled 7.3 19 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 59 c2ph7B_ not modelled 7.2 33 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein af_2093; PDBTitle: crystal structure of af2093 from archaeoglobus fulgidus 60 d1u9ya1 not modelled 7.2 18 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 61 c3hfwA_ not modelled 7.1 27 PDB header:hydrolase Chain: A: PDB Molecule:protein adp-ribosylarginine hydrolase; PDBTitle: crystal structure of human adp-ribosylhydrolase 1 (harh1) 62 d1v4va_ not modelled 7.1 21 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 63 d1vpra1 not modelled 6.8 75 Fold:Lipocalins Superfamily:Lipocalins Family:Dinoflagellate luciferase repeat 64 c2xa0A_ not modelled 6.8 19 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis regulator bcl-2; PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide 65 c2nrhA_ not modelled 6.5 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:transcriptional activator, putative, baf family; PDBTitle: crystal structure of conserved putative baf family2 transcriptional activator from campylobacter jejuni 66 c2jkzB_ not modelled 6.5 17 PDB header:transferase Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: saccharomyces cerevisiae hypoxanthine-guanine2 phosphoribosyltransferase in complex with gmp (guanosine 5'3 -monophosphate) (orthorhombic crystal form) 67 c3eeqB_ not modelled 6.3 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative cobalamin biosynthesis protein g PDBTitle: crystal structure of a putative cobalamin biosynthesis2 protein g homolog from sulfolobus solfataricus 68 c3c8oB_ not modelled 6.1 47 PDB header:hydrolase regulator Chain: B: PDB Molecule:regulator of ribonuclease activity a; PDBTitle: the crystal structure of rraa from pao1 69 d1bwva2 not modelled 6.0 22 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 70 c2o2fA_ not modelled 6.0 20 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis regulator bcl-2; PDBTitle: solution structure of the anti-apoptotic protein bcl-2 in2 complex with an acyl-sulfonamide-based ligand 71 c3lnoA_ not modelled 6.0 33 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis 72 c1kv3F_ not modelled 5.9 50 PDB header:transferase Chain: F: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: human tissue transglutaminase in gdp bound form 73 c2yuyA_ not modelled 5.8 14 PDB header:signaling protein Chain: A: PDB Molecule:rho gtpase activating protein 21; PDBTitle: solution structure of pdz domain of rho gtpase activating2 protein 21 74 c3iraA_ not modelled 5.5 46 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1 75 c2dc0A_ not modelled 5.4 34 PDB header:hydrolase Chain: A: PDB Molecule:probable amidase; PDBTitle: crystal structure of amidase 76 d1rxwa1 not modelled 5.4 14 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 77 d1j9ba_ not modelled 5.4 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 78 d8ruca2 not modelled 5.3 7 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 79 d1ee8a1 not modelled 5.3 33 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 80 d1ujva_ not modelled 5.3 36 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 81 d1svda2 not modelled 5.1 13 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 82 c2gx5B_ not modelled 5.1 5 PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody 83 d1vi4a_ not modelled 5.1 27 Fold:The "swivelling" beta/beta/alpha domain Superfamily:RraA-like Family:RraA-like 84 d1pq1a_ not modelled 5.0 20 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 85 d2jm6b1 not modelled 5.0 13 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 86 d1wjpa2 not modelled 5.0 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0