Job Description P0A959 Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012 Rank 79 Aligned Residues 330 % Identity 16% Template d2hoxa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like Resolution 1.40

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.										.	.
Query SS confidence																																	.	.	.	.	.	.										.	.
Query Sequence		G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	.	.	.	.	.	.	P	T	A	Q	G	Y	C	D	S	.	.	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G
Query Conservation																																	.	.	.	.	.	.										.	.
Alig confidence															.	.	.																.	.	.	.	.	.										.	.
Template Conservation															.	.	.
Template Sequence		Q	G	C	S	A	D	V	A	S	G	D	G	L	.	.	.	F	L	E	E	Y	W	K	Q	H	K	E	A	S	A	V	L	V	S	P	W	H	R	M	S	Y	F	F	N	P	V	S	N	F	I	S	F	E	L	E	K	T	I	K	E	L	H	E	V	V	G	N	A	A	A	K	D	R	Y	I	V	F	G	V	G
Template Known Secondary structure		T	T							S				G	.	.	.	G	G					T	T	S										T	T	T	T		S	S	S		S	S			T	T																	T		B			T	T							S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.									.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.
Query Sequence		V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	.	.	.	.	.	.	.	.	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I
Query Conservation																				.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.
Template Sequence		V	T	Q	L	I	H	G	L	V	I	S	L	S	P	N	M	T	A	T	P	D	A	P	E	S	K	V	V	A	H	A	P	F	Y	P	V	F	R	E	Q	T	K	Y	F	D	K	K	G	Y	V	W	A	G	N	A	A	N	.	.	.	.	.	.	.	.	Y	V	N	V	S	N	P	E	Q	Y	I	E	M	V	T
Template Known Secondary structure														S			T	T	T		T	T	S									S	S												S			T	T							G	G	G	.	.	.	.	.	.	.	.	G	T	T		S		G	G	G
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Sequence		S	P	N	N	P	E	G	L	L	R	H	.	.	.	.	.	.	.	.	.	.	A	V	I	K	G	C	K	S	I	Y	D	M	V	Y	Y	W	P	H	Y	T	P	I	K	Y	K	A	.	.	.	.	.	.	.	D	E	D	I	L	L	F	T	M	S	K	F	T	G	H	S	G	S	R	F	G	W	A	L	I	K
Template Known Secondary structure		S	S		T	T	T						.	.	.	.	.	.	.	.	.	.		S	S	T	T								T	T		S	T	T	T	S				S		B	.	.	.	.	.	.	.			S										T	S		G	G	G
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.											.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240								.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
			256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.										.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure		.																																						.	.	.	.	.	.	.	.	.																															.	.	.
Query SS confidence		.																																						.	.	.	.	.	.	.	.	.																															.	.	.
Query Sequence		.	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	.	.	.	.	.	.	.	.	.	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	.	.	.
Query Conservation		.																																						.	.	.	.	.	.	.	.	.																															.	.	.
Alig confidence		.													.	.	.	.	.																					.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation															.	.	.	.	.
Template Sequence		D	E	S	V	Y	N	N	L	L	N	Y	M	T	.	.	.	.	.	K	N	T	E	G	T	P	R	E	T	Q	L	R	S	L	K	V	L	K	E	V	V	A	M	V	K	T	Q	K	G	T	M	R	D	L	N	T	F	G	F	K	K	L	R	E	R	W	V	N	I	T	A	L	L	D	Q	S	D	R	F	S	Y
Template Known Secondary structure															.	.	.	.	.			T	S	S																								T	T	S	T	T	S																					T	T	S	S	S
Template Predicted Secondary structure															.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
													323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	T	L	P	R	V	D	D	I	E	L	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.																									.
Template Conservation																															.	.	.	.	.	.																									.
Template Sequence		Q	E	L	P	Q	S	E	Y	C	N	Y	F	R	R	M	R	P	P	S	P	S	Y	A	W	V	K	C	E	W	.	.	.	.	.	.	E	E	D	K	D	C	Y	Q	T	F	Q	N	G	R	I	N	T	Q	N	G	V	G	F	E	.	A	S	S	R	Y	V	R	L	S	L	I	K	T	Q	D	D	F	D	Q	L
Template Known Secondary structure						S					T	T	T	T								S								S	.	.	.	.	.	.	G	G	G		S								T	T						G	G	G	G	T	.	S		T	T							S	S
Template Predicted Secondary structure																															.	.	.	.	.	.																									.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370							.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		392	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	K	F	A	R	F	L	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Y	Y	L	K	D	M	V	K	A
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions