79 d2hoxa1 Probab=100.00  E-value=2.7e-40  Score=279.20  Aligned_columns=330  Identities=16%

Q ss_pred             CCCEEECCCCCCCCCCCCCCHHHHHHHHHHH------HHHCCCCCC--CCCHHHHHHHHHHHHHHCCCCCCHHHEEEECC
Q ss_conf             9967986689988344789789999999988------741289987--68989999999999986189999767788088
Q batch____        32 GNKVLKLNIGNPAPFGFDAPDEILVDVIRNL------PTAQGYCDS--KGLYSARKAIMQHYQARGMRDVTVEDIYIGNG  103 (405)
Q Consensus        32 ~~~ii~l~~G~p~~~~~~~~~~~~~a~~~~l------~~~~~Y~~~--~G~~~lreaia~~~~~~~~~~~~p~~I~~t~G  103 (405)
                      ...++|++.|+|.   |..+-....+...++      .....|.+.  .+.++|++.|++.+....+..+++++|++|+|
T Consensus        55 ~~~~~~~~~gdp~---~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G  131 (425)
T d2hoxa1          55 QGCSADVASGDGL---FLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVG  131 (425)
T ss_dssp             TTCCEECCSCCCG---GGHHHHTTSHHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESH
T ss_pred             CCCCCCCCCCCCC---CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf             6554346678855---4636641142100011245554565456643445289999999998850886788776999468


Q ss_pred             HHHHHHHHHHHHCCCCCE--------EEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEECC
Q ss_conf             389999999972048989--------998389708999999962986999984147886759799886248776033034
Q batch____       104 VSELIVQAMQALLNSGDE--------MLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVII  175 (405)
Q Consensus       104 ~t~~i~~~~~~l~~~Gd~--------Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (405)
                      ++++|..++++|+++||.        |+++.|+|+.|...+...|.+...++.|.+.        +.....+.+.+++++
T Consensus       132 ~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~~~~~~i~  203 (425)
T d2hoxa1         132 VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAAN--------YVNVSNPEQYIEMVT  203 (425)
T ss_dssp             HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEEEEEGGG--------GTTCSCGGGEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHH--------HHHHCCCCCEEEEEC
T ss_conf             899999999986488861235677435730023778999998559974442479889--------997248885799981


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEECCCCHHHHHCCCCCCEEEEC
Q ss_conf             77876532378899999999998679889852765644468877884355202555411011101111012466068855
Q batch____       176 NPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLN  255 (405)
Q Consensus       176 ~~~nptg~~~~~~~~~~l~~~a~~~~~~ii~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~g~~~~~  255 (405)
                      +|+||||.+++          |.++++++|+||+|....+.+.....       ++.+.+.|+||.++++|+|+||++.+
T Consensus       204 ~P~NPtG~v~~----------a~~~~~~~i~De~y~~~~~~~~~~~~-------~~~i~~~S~SK~~g~~GlRiG~~i~~  266 (425)
T d2hoxa1         204 SPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPIKYKA-------DEDILLFTMSKFTGHSGSRFGWALIK  266 (425)
T ss_dssp             SSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSCCCSCB-------CCSEEEEEHHHHTSCGGGCCEEEEEC
T ss_pred             CCCCCCCEEEE----------EEECCCEEEEECCCCCCCCCCCCCCC-------CCEEEEEECCCCCCCCCCCEEEEEEC
T ss_conf             78888560654----------23239689971432343323333456-------85499981551012332310189968


Q ss_pred             -HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---
Q ss_conf             -2577889987666541246765025899999999818---------102467899999999999999996430498---
Q batch____       256 -GPKKHAKGYIEGLEMLASMRLCANVPAQHAIQTALGG---------YQSISEFITPGGRLYEQRNRAWELINDIPG---  322 (405)
Q Consensus       256 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  322 (405)
                       ............     ....+++.+.|.++..++.+         ..........++.+.+++..+.+.+.....   
T Consensus       267 ~~~i~~~l~~~~~-----~~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l  341 (425)
T d2hoxa1         267 DESVYNNLLNYMT-----KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSY  341 (425)
T ss_dssp             CHHHHHHHHHHHH-----HHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEEC
T ss_pred             CHHHHHHHHHHHH-----CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9899999998641-----05777368999999999602013456555548999999999999999999999863576300


Q ss_pred             -----------CEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHH
Q ss_conf             -----------289268873389997465557878879999999984692998062318899977999904998999999
Q batch____       323 -----------VSCVKPRGALYMFPKIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPRVDDIELS  391 (405)
Q Consensus       323 -----------~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~~~l~~~gV~v~pG~~f~~~~~~~iRis~~~~~e~l~~a  391 (405)
                                 +....|.+++|+|++++.      ++.+++.++|+++||.++||+.|| .+++|+|||++.++|+++++
T Consensus       342 ~~~p~~~~~~~~~~~~~~~~~f~w~~~~~------~~~~~~~~lL~e~GI~v~pGs~FG-~~~~~vRiSl~~~~e~ld~~  414 (425)
T d2hoxa1         342 QELPQSEYCNYFRRMRPPSPSYAWVKCEW------EEDKDCYQTFQNGRINTQNGVGFE-ASSRYVRLSLIKTQDDFDQL  414 (425)
T ss_dssp             CCCCSCEEETTTTEEECCCCSEEEEEECS------GGGCSHHHHHHHTTEECEEGGGGT-SCTTEEEEECSSCHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEECCC------CCHHHHHHHHHHCCEEEECCCCCC-CCCCEEEEEECCCHHHHHHH
T ss_conf             34565543221001377876169986789------808999999996694997170238-98865999913998999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999986
Q batch____       392 LSKFARFLSG  401 (405)
Q Consensus       392 l~rL~~~l~~  401 (405)
                      ++||+++++.
T Consensus       415 l~rL~~~v~~  424 (425)
T d2hoxa1         415 MYYLKDMVKA  424 (425)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHC
T ss_conf             9999998726