Job Description Q46915 Confidence 100.00% Date Thu Jan 5 12:35:49 GMT 2012 Rank 35 Aligned Residues 360 % Identity 19% Template c3sqsA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing protein from dinoroseobacter shibae dfl 12 Resolution 1.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.										.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.																												.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.																												.	.
Query Sequence		S	S	P	V	I	T	D	M	K	V	I	P	V	A	G	H	D	S	M	L	L	N	I	G	G	A	H	N	A	Y	F	T	R	.	.	.	.	.	.	.	.	.	N	I	V	V	L	T	D	N	A	G	H	T	G	I	G	E	A	P	G	G	D	V	I	Y	Q	T	L	.	.	V	D	A	I	P	M	V	L	G
Query Conservation																																			.	.	.	.	.	.	.	.	.																												.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.																												.	.
Template Conservation
Template Sequence		T	K	I	K	S	V	R	T	R	V	W	N	W	T	G	P	T	V	P	P	Q	G	N	F	C	T	N	A	S	D	A	L	W	I	A	S	F	R	F	H	Q	W	L	T	C	E	V	E	T	E	D	G	T	I	G	I	G	N	A	A	L	A	P	N	V	V	K	Q	A	I	D	E	W	Y	A	P	L	V	I	G
Template Known Secondary structure																S						S	S		B				G	G	G	G	S								S										T	T	S									S	S											T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	V	A	R	L	N	K	V	V	Q	Q	V	H	K	G	N	Q	A	A	D	F	D	T	F	G	K	G	A	W	T	F	E	L	R	V	N	A	V	A	A	L	E	A	A	L	L	D	L	L	G	K	A	L	N	V	P	V	C	E	L	L	G	P	G	K	Q	R	E	A	I	T	V	L	G	Y	L	F	Y	I
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.																													.
Template Conservation																												.	.	.	.	.	.	.	.	.																													.
Template Sequence		E	D	P	F	D	Y	A	Y	L	W	E	K	M	Y	R	R	T	H	A	W	G	R	K	G	I	G	.	.	.	.	.	.	.	.	.	M	T	A	I	S	A	I	D	I	A	I	W	D	L	M	G	K	L	V	G	K	P	V	F	K	L	L	G	.	G	R	T	K	E	K	I	P	V	Y	Y	S	K	L	Y	A
Template Known Secondary structure		S		G	G	G												T					S	S	T			.	.	.	.	.	.	.	.	.																				T		B						T	.				S	S	S										B
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.										.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.																	.
Query SS confidence																																																											.	.	.	.	.	.																	.
Query Sequence		G	D	R	T	K	T	D	L	P	Y	V	E	N	T	P	G	N	H	E	W	Y	Q	L	R	H	Q	K	A	M	N	S	E	A	V	V	R	L	A	E	A	S	Q	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	.	.	.	.	.	.	P	G	E	Q	E	I	D	T	V	R	A	L	K	K	R	F	.
Query Conservation																																																											.	.	.	.	.	.																	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.													.	.	.	.	.	.																	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	P	A	M	Q	A	E	A	E	E	A	Q	K	H	.	G	Y	Q	G	Y	K	T	R	F	G	Y	G	P	K	D	G	P	A	G	M	R	E	N	L	K	R	V	E	A	L	R	E	V	L	G
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	.	T		S										G	G	G
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		179																													180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		P	D	A	R	I	T	V	D	P	N	G	A	W	L	L	D	E	A	I	S	L	C	K	G	L	N	D	V	.	L	T	Y	A	E	D	P	C	G	A	E	Q	G	F	S	G	R	E	V	M	A	E	F	R	R	A	T	G	L	P	V	A	T	N	M	I	A	T	N	W	R	E	M	G	H	A	V	M	L	N	A
Query Conservation																														.
Alig confidence																														.													.	.	.	.
Template Conservation																																											.	.	.	.
Template Sequence		Y	D	V	D	L	M	L	E	C	Y	M	G	W	N	L	D	Y	T	K	R	M	L	P	K	L	E	R	F	E	P	R	W	L	E	E	P	V	I	A	D	D	.	.	.	.	V	A	G	Y	A	E	L	N	A	M	G	I	V	P	I	S	G	G	E	H	E	F	S	V	M	G	C	A	E	L	I	N	R	K	A
Template Known Secondary structure		S	S	S							T	T		S													G	G	G			S						S		T	T		.	.	.	.										T		S	S						T	T			S										T	T
Template Predicted Secondary structure																																											.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270					.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		306	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		V	D	I	P	L	A	D	P	.	H	F	W	T	L	S	G	A	V	R	V	A	Q	L	C	D	D	W	G	L	T	W	G	C	H	S	N	N	H	F	D	I	S	L	A	M	F	T	H	V	G	A	A	A	P	G	N	P	T	A	I	D	T	H	W	I	W	Q	E	G	D	C	R	L	T	Q	N	P	L	E	I
Query Conservation										.
Alig confidence										.																																																		.	.
Template Conservation																																																												.	.
Template Sequence		V	S	V	L	Q	Y	D	T	N	R	V	G	G	I	T	A	A	Q	K	I	N	A	I	A	E	A	A	Q	I	I	V	I	P	H	A	G	Q	M	H	N	Y	H	L	T	M	A	N	M	N	C	P	I	S	E	Y	F	P	V	.	.	F	D	V	E	V	G	N	E	L	F	Y	Y	I	F	D	G	D	P	E	A
Template Known Secondary structure			S										T																T						S	S		S									T		T	T									S	.	.			S	S	S	S	T	T	T
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		385	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		K	N	G	K	I	A	V	.	P	D	A	P	G	L	G	V	E	L	D	W	E	Q	V	Q	K	A
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		V	D	G	Y	L	Q	L	D	D	D	T	P	G	L	G	I	T	I	S	D	A	H	L	K	H	F
Template Known Secondary structure		B	T	T						S	S	S		B	T	S					S	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions