Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
Sequence		M	P	Q	K	Y	R	L	L	S	L	I	V	I	C	F	T	L	L	F	F	T	W	M	I	R	D	S	L	C	E	L	H	I	K	Q	E	S	Y	E	L	A	A	F	L	A	C	K	L	K	E
Secondary structure
SS confidence
Disorder		?	?																																												?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1zll chain E Region: 10 - 23 Aligned: 14 Modelled: 14 Confidence: 14.6% Identity: 43% PDB header:membrane protein/signaling protein Chain: E: PDB Molecule:cardiac phospholamban; PDBTitle: nmr structure of unphosphorylated human phospholamban2 pentamer Phyre2 PDB 3m5b chain A Region: 25 - 42 Aligned: 18 Modelled: 18 Confidence: 14.0% Identity: 39% PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: crystal structure of the btb domain from fazf/zbtb32 Phyre2 PDB 2wj8 chain N Region: 8 - 21 Aligned: 14 Modelled: 14 Confidence: 12.7% Identity: 29% PDB header:rna binding protein/rna Chain: N: PDB Molecule:nucleoprotein; PDBTitle: respiratory syncitial virus ribonucleoprotein Phyre2 PDB 2krx chain A Region: 25 - 38 Aligned: 14 Modelled: 14 Confidence: 10.9% Identity: 36% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asl3597 protein; PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244. Phyre2 1 c1zllE_ 2 c3m5bA_ 3 c2wj8N_ 4 c2krxA_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1zllE_ 14.6 43 PDB header:membrane protein/signaling protein Chain: E: PDB Molecule:cardiac phospholamban; PDBTitle: nmr structure of unphosphorylated human phospholamban2 pentamer 2 c3m5bA_ 14.0 39 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: crystal structure of the btb domain from fazf/zbtb32 3 c2wj8N_ 12.7 29 PDB header:rna binding protein/rna Chain: N: PDB Molecule:nucleoprotein; PDBTitle: respiratory syncitial virus ribonucleoprotein 4 c2krxA_ 10.9 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asl3597 protein; PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0