Job Description P0AEI1 Confidence 99.83% Date Thu Jan 5 11:23:24 GMT 2012 Rank 7 Aligned Residues 211 % Identity 13% Template c3rfaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Resolution 2.05 Å

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		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.											.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	A	E	G	P	T	A	F	V	S	I	M	E	G	C	N	K	Y	C	T	Y	C	V	V	P	Y	T	R	G	E	E	V	S	R	P	S	D	D	I	L	F	E	I	A	Q	L	A	A	Q	.	.	.	.	.	.	.	.	.	.	G	V	R	E	V	N	L	L	G	Q	N	V	N	A	W	R	G	E	N	Y
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																														.																						.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Conservation																														.																																								.	.	.	.	.	.	.
Template Sequence		P	E	D	D	R	A	T	L	C	V	S	S	Q	V	G	C	A	L	E	C	K	F	C	S	T	A	Q	Q	.	G	F	N	R	N	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	K	I	V	G	A	A	K	V	T	G	Q	R	P	I	T	N	V	V	M	M	.	.	.	.	.	.	.	G	M	G	E	P
Template Known Secondary structure				S	S													S	S			T	T		G	G	G	T	T	.																													S	S		S		S						.	.	.	.	.	.	.	S	S	S		G
Template Predicted Secondary structure																														.																																								.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.								.	.	.	180	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.
Query SS confidence																																																																			.	.	.
Query Sequence		D	G	T	T	G	S	F	A	D	L	L	R	L	V	A	A	I	D	G	I	D	R	I	R	F	T	T	S	H	P	I	E	F	T	D	D	I	I	E	V	Y	R	D	T	P	E	L	V	S	F	L	H	L	P	V	Q	S	G	S	D	R	I	L	N	L	.	.	.	M	G	R	T	H	T	A	L	E	Y	K	A
Query Conservation																																																																			.	.	.
Alig confidence																																															.	.																			.	.	.
Template Conservation																																															.	.
Template Sequence		L	L	N	L	N	N	V	V	P	A	M	E	I	M	L	D	D	F	G	F	G	L	S	K	R	R	V	T	L	S	T	S	G	V	V	P	A	L	D	K	L	G	D	M	I	.	.	D	V	A	L	A	I	S	L	H	A	P	N	D	E	I	R	D	E	I	V	P	I	N	K	K	Y	N	I	E	T	F	L	A
Template Known Secondary structure		G	G														S	T	T	T	T				G	G	G						S														.	.											S	S								S	G	G	G	G	T	S
Template Predicted Secondary structure																																															.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		I	I	R	K	L	R	A	A	R	P	D	.	.	.	I	Q	I	S	S	D	F	I	V	G	F	P	G	E	T	T	E	D	F	E	K	T	M	K	L	I	A	D	V	N	F	D	M	S	Y	S	F	I	F	S	A	R	P	G	T	P	A	A	D	M	V	D	D	V	P	E	E	E	K	K	Q	R	L	Y	I	L
Query Conservation													.	.	.
Alig confidence													.	.	.																																.															.	.	.	.
Template Conservation																																															.															.	.	.	.
Template Sequence		A	V	R	R	Y	L	E	K	S	N	A	N	Q	G	R	V	T	I	E	Y	V	M	L	D	H	V	N	D	G	T	E	H	A	H	Q	L	A	E	L	L	K	D	T	P	C	.	K	I	N	L	I	P	W	N	P	F	P	G	A	P	.	.	.	.	Y	G	R	S	S	N	S	R	I	D	R	F	S	K	V	L
Template Known Secondary structure											T	T	T	T	T									B	T	T	T	T		S											T	T	T	S			.											T	T			.	.	.	.			B
Template Predicted Secondary structure																																															.															.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.					.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		366	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		335	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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