Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	N	F	A	V	S	R	E	S	L	L	S	G	F	Q	W	F	F	F	I	F	C	N	T	V	V	V	P	P	T	L	L	S	A	F	Q	L	P	Q	S	S	L	L	T	L	T	Q	Y	A	F	L	A	T	A	L	A	C	F	A
Secondary structure
SS confidence
Disorder		?	?	?	?																																?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	A	F	C	G	H	R	R	A	I	M	E	G	P	G	G	L	W	W	G	T	I	L	T	I	T	L	G	E	A	S	R	G	T	P	I	N	D	I	A	T	S	L	A	V	G	I	A	L	S	G	V	L	T	M	L	I	G	F	S
Secondary structure
SS confidence
Disorder															?														?	?	?	?	?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	L	G	H	R	L	A	R	L	F	T	P	S	V	M	V	L	F	M	L	M	L	G	A	Q	L	T	T	I	F	F	K	G	M	L	G	L	P	F	G	I	A	D	P	N	F	K	I	Q	L	P	P	F	A	L	S	V	A	V	M
Secondary structure
SS confidence
Disorder																																										?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	L	V	L	A	M	I	I	F	L	P	Q	R	F	A	R	Y	G	L	L	V	G	T	I	T	G	W	L	L	W	Y	F	C	F	P	S	S	H	S	L	S	G	E	L	H	W	Q	W	F	P	L	G	S	G	G	A	L	S	P	G
Secondary structure
SS confidence
Disorder										?		?	?	?																							?	?	?	?	?	?	?	?	?	?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	I	L	T	A	V	I	T	G	L	V	N	I	S	N	T	Y	G	A	I	R	G	T	D	V	F	Y	P	Q	Q	G	A	G	N	T	R	Y	R	R	S	F	V	A	T	G	F	M	T	L	I	T	V	P	L	A	V	I	P	F	S
Secondary structure
SS confidence
Disorder																												?	?	?	?	?	?	?	?																					?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		P	F	V	S	S	I	G	L	L	T	Q	T	G	D	Y	T	R	R	S	F	I	Y	G	S	V	I	C	L	L	V	A	L	V	P	A	L	T	R	L	F	C	S	I	P	L	P	V	S	S	A	V	M	L	V	S	Y	L	P	L	L
Secondary structure
SS confidence
Disorder		?											?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		F	S	A	L	V	F	S	Q	Q	I	T	F	T	A	R	N	I	Y	R	L	A	L	P	L	F	V	G	I	F	L	M	A	L	P	P	V	Y	L	Q	D	L	P	L	T	L	R	P	L	L	S	N	G	L	L	V	G	I	L	L	A
Secondary structure
SS confidence
Disorder																																																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.
Sequence		V	L	M	D	N	L	I	P	W	E	R	I	E
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qe7 chain A Region: 4 - 428 Aligned: 393 Modelled: 414 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa Phyre2 PDB 2a65 chain A domain 1 Region: 152 - 421 Aligned: 263 Modelled: 270 Confidence: 29.6% Identity: 7% Fold: SNF-like Superfamily: SNF-like Family: SNF-like Phyre2 PDB 3org chain B Region: 262 - 429 Aligned: 168 Modelled: 168 Confidence: 23.7% Identity: 14% PDB header:transport protein Chain: B: PDB Molecule:cmclc; PDBTitle: crystal structure of a eukaryotic clc transporter Phyre2 PDB 3lpz chain A Region: 285 - 301 Aligned: 17 Modelled: 17 Confidence: 22.4% Identity: 0% PDB header:protein transport Chain: A: PDB Molecule:get4 (yor164c homolog); PDBTitle: crystal structure of c. therm. get4 Phyre2 PDB 1unh chain D Region: 4 - 70 Aligned: 65 Modelled: 67 Confidence: 17.1% Identity: 23% PDB header:cell cycle Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1; PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin. Phyre2 PDB 1unl chain D Region: 4 - 70 Aligned: 65 Modelled: 67 Confidence: 16.4% Identity: 23% Fold: Cyclin-like Superfamily: Cyclin-like Family: Cyclin Phyre2 PDB 3nd0 chain A Region: 262 - 423 Aligned: 161 Modelled: 162 Confidence: 15.9% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter Phyre2 PDB 1bzk chain A Region: 15 - 37 Aligned: 23 Modelled: 23 Confidence: 11.6% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:protein (band 3 anion transport protein); PDBTitle: structural studies on the effects of the deletion in the2 red cell anion exchanger (band3, ae1) associated with3 south east asian ovalocytosis. Phyre2 PDB 2d4v chain D Region: 261 - 328 Aligned: 68 Modelled: 68 Confidence: 11.1% Identity: 12% PDB header:oxidoreductase Chain: D: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of nad dependent isocitrate dehydrogenase2 from acidithiobacillus thiooxidans Phyre2 PDB 2bbj chain B Region: 18 - 68 Aligned: 50 Modelled: 51 Confidence: 10.4% Identity: 4% PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter Phyre2 PDB 2kpe chain A Region: 41 - 69 Aligned: 29 Modelled: 29 Confidence: 9.8% Identity: 21% PDB header:membrane protein Chain: A: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles Phyre2 PDB 2kpe chain B Region: 41 - 69 Aligned: 29 Modelled: 29 Confidence: 9.8% Identity: 21% PDB header:membrane protein Chain: B: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles Phyre2 PDB 2ht2 chain B Region: 260 - 423 Aligned: 164 Modelled: 164 Confidence: 9.7% Identity: 9% PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex Phyre2 PDB 2xte chain H Region: 3 - 51 Aligned: 49 Modelled: 49 Confidence: 9.1% Identity: 24% PDB header:transcription Chain: H: PDB Molecule:f-box-like/wd repeat-containing protein tbl1x; PDBTitle: structure of the tbl1 tetramerisation domain Phyre2 PDB 3fgx chain A Region: 417 - 433 Aligned: 17 Modelled: 17 Confidence: 8.6% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:rbstp2171; PDBTitle: structure of uncharacterised protein rbstp2171 from bacillus2 stearothermophilus Phyre2 PDB 2xtd chain B Region: 3 - 52 Aligned: 50 Modelled: 50 Confidence: 8.5% Identity: 24% PDB header:transcription Chain: B: PDB Molecule:tbl1 f-box-like/wd repeat-containing protein tbl1x; PDBTitle: structure of the tbl1 tetramerisation domain Phyre2 PDB 1btt chain A Region: 47 - 68 Aligned: 22 Modelled: 20 Confidence: 8.1% Identity: 18% PDB header:transmembrane protein Chain: A: PDB Molecule:band 3 anion transport protein; PDBTitle: the solution structures of the first and second2 transmembrane-spanning segments of band 3 Phyre2 PDB 1bts chain A Region: 47 - 68 Aligned: 22 Modelled: 20 Confidence: 8.1% Identity: 18% PDB header:transmembrane protein Chain: A: PDB Molecule:band 3 anion transport protein; PDBTitle: the solution structures of the first and second2 transmembrane-spanning segments of band 3 Phyre2 PDB 1v53 chain A domain 1 Region: 261 - 302 Aligned: 42 Modelled: 42 Confidence: 7.9% Identity: 7% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 PDB 1g2u chain A Region: 261 - 302 Aligned: 42 Modelled: 42 Confidence: 7.8% Identity: 7% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Dimeric isocitrate & isopropylmalate dehydrogenases Phyre2 1 c3qe7A_ 2 d2a65a1 3 c3orgB_ 4 c3lpzA_ 5 c1unhD_ 6 d1unld_ 7 c3nd0A_ 8 c1bzkA_ 9 c2d4vD_ 10 c2bbjB_ 11 c2kpeA_ 12 c2kpeB_ 13 c2ht2B_ 14 c2xteH_ 15 c3fgxA_ 16 c2xtdB_ 17 c1bttA_ 18 c1btsA_ 19 d1v53a1 20 d1g2ua_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qe7A_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa 2 d2a65a1 29.6 7 Fold:SNF-like Superfamily:SNF-like Family:SNF-like 3 c3orgB_ 23.7 14 PDB header:transport protein Chain: B: PDB Molecule:cmclc; PDBTitle: crystal structure of a eukaryotic clc transporter 4 c3lpzA_ 22.4 0 PDB header:protein transport Chain: A: PDB Molecule:get4 (yor164c homolog); PDBTitle: crystal structure of c. therm. get4 5 c1unhD_ 17.1 23 PDB header:cell cycle Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1; PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin. 6 d1unld_ 16.4 23 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 7 c3nd0A_ 15.9 16 PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter 8 c1bzkA_ 11.6 13 PDB header:transport protein Chain: A: PDB Molecule:protein (band 3 anion transport protein); PDBTitle: structural studies on the effects of the deletion in the2 red cell anion exchanger (band3, ae1) associated with3 south east asian ovalocytosis. 9 c2d4vD_ 11.1 12 PDB header:oxidoreductase Chain: D: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of nad dependent isocitrate dehydrogenase2 from acidithiobacillus thiooxidans 10 c2bbjB_ 10.4 4 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 11 c2kpeA_ 9.8 21 PDB header:membrane protein Chain: A: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles 12 c2kpeB_ 9.8 21 PDB header:membrane protein Chain: B: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles 13 c2ht2B_ 9.7 9 PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex 14 c2xteH_ 9.1 24 PDB header:transcription Chain: H: PDB Molecule:f-box-like/wd repeat-containing protein tbl1x; PDBTitle: structure of the tbl1 tetramerisation domain 15 c3fgxA_ 8.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:rbstp2171; PDBTitle: structure of uncharacterised protein rbstp2171 from bacillus2 stearothermophilus 16 c2xtdB_ 8.5 24 PDB header:transcription Chain: B: PDB Molecule:tbl1 f-box-like/wd repeat-containing protein tbl1x; PDBTitle: structure of the tbl1 tetramerisation domain 17 c1bttA_ 8.1 18 PDB header:transmembrane protein Chain: A: PDB Molecule:band 3 anion transport protein; PDBTitle: the solution structures of the first and second2 transmembrane-spanning segments of band 3 18 c1btsA_ 8.1 18 PDB header:transmembrane protein Chain: A: PDB Molecule:band 3 anion transport protein; PDBTitle: the solution structures of the first and second2 transmembrane-spanning segments of band 3 19 d1v53a1 7.9 7 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 20 d1g2ua_ 7.8 7 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 21 c2e0cA_ not modelled 7.4 4 PDB header:oxidoreductase Chain: A: PDB Molecule:409aa long hypothetical nadp-dependent isocitrate PDBTitle: crystal structure of isocitrate dehydrogenase from sulfolobus tokodaii2 strain7 at 2.0 a resolution 22 d1rutx4 not modelled 7.3 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 23 c1x0lB_ not modelled 7.2 5 PDB header:oxidoreductase Chain: B: PDB Molecule:homoisocitrate dehydrogenase; PDBTitle: crystal structure of tetrameric homoisocitrate dehydrogenase from an2 extreme thermophile, thermus thermophilus 24 c3u1hA_ not modelled 7.2 2 PDB header:oxidoreductase Chain: A: PDB Molecule:3-isopropylmalate dehydrogenase; PDBTitle: crystal structure of ipmdh from the last common ancestor of bacillus 25 d1xaca_ not modelled 7.1 7 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 26 d1cnza_ not modelled 7.1 5 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 27 c3a0bt_ not modelled 6.3 21 PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of br-substituted photosystem ii complex 28 d2axtt1 not modelled 6.3 21 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein T, PsbT Family:PsbT-like 29 c2axtt_ not modelled 6.3 21 PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center t protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 30 c3a0ht_ not modelled 6.3 21 PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of i-substituted photosystem ii complex 31 c3a0hT_ not modelled 6.3 21 PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of i-substituted photosystem ii complex 32 c3kziT_ not modelled 6.3 21 PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 33 c2axtT_ not modelled 6.3 21 PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center t protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 34 c3arcT_ not modelled 6.3 21 PDB header:electron transport, photosynthesis Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 35 c1svfB_ not modelled 6.3 31 PDB header:viral protein Chain: B: PDB Molecule:protein (fusion glycoprotein); PDBTitle: paramyxovirus sv5 fusion protein core 36 c1s5lT_ not modelled 6.3 21 PDB header:photosynthesis Chain: T: PDB Molecule:photosystem ii psbt protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 37 c1s5lt_ not modelled 6.3 21 PDB header:photosynthesis Chain: T: PDB Molecule:photosystem ii psbt protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 38 d1mswd_ not modelled 6.3 44 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:T7 RNA polymerase 39 c3prrT_ not modelled 6.3 21 PDB header:photosynthesis Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 40 c3bz1T_ not modelled 6.3 21 PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 41 c3prqT_ not modelled 6.3 21 PDB header:photosynthesis Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 42 c3bz2T_ not modelled 6.3 21 PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 43 c2qeuA_ not modelled 6.2 7 PDB header:lyase Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase; PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution 44 c1wazA_ not modelled 6.2 5 PDB header:transport protein Chain: A: PDB Molecule:merf; PDBTitle: nmr structure determination of the bacterial mercury2 transporter, merf, in micelles 45 d1cm7a_ not modelled 6.2 5 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 46 c2pjvA_ not modelled 6.0 22 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein; PDBTitle: solution structure of hiv-1 gp41 fusion domain bound to dpc2 micelle 47 d1vlca_ not modelled 6.0 2 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 48 d1wpwa_ not modelled 5.9 2 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 49 d2pnga1 not modelled 5.9 10 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 50 c3s0xB_ not modelled 5.8 13 PDB header:hydrolase Chain: B: PDB Molecule:peptidase a24b, flak domain protein; PDBTitle: the crystal structure of gxgd membrane protease flak 51 c1erfA_ not modelled 5.8 22 PDB header:viral protein Chain: A: PDB Molecule:transmembrane glycoprotein; PDBTitle: conformational mapping of the n-terminal fusion peptide of2 hiv-1 gp41 using 13c-enhanced fourier transform infrared3 spectroscopy (ftir) 52 d1hqsa_ not modelled 5.7 5 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 53 c2gfpA_ not modelled 5.7 14 PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli 54 c3r8wC_ not modelled 5.6 7 PDB header:oxidoreductase Chain: C: PDB Molecule:3-isopropylmalate dehydrogenase 2, chloroplastic; PDBTitle: structure of 3-isopropylmalate dehydrogenase isoform 2 from2 arabidopsis thaliana at 2.2 angstrom resolution 55 d1w0da_ not modelled 5.6 10 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 56 c1mxeE_ not modelled 5.5 57 PDB header:metal binding protein Chain: E: PDB Molecule:target sequence of rat calmodulin-dependent PDBTitle: structure of the complex of calmodulin with the target2 sequence of camki 57 c1mxeF_ not modelled 5.5 57 PDB header:metal binding protein Chain: F: PDB Molecule:target sequence of rat calmodulin-dependent PDBTitle: structure of the complex of calmodulin with the target2 sequence of camki 58 c3spaA_ not modelled 5.5 22 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase, mitochondrial; PDBTitle: crystal structure of human mitochondrial rna polymerase 59 c2jd3B_ not modelled 5.4 7 PDB header:dna binding protein Chain: B: PDB Molecule:stbb protein; PDBTitle: parr from plasmid pb171 60 d1gr0a1 not modelled 5.4 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 61 c1afoB_ not modelled 5.4 23 PDB header:integral membrane protein Chain: B: PDB Molecule:glycophorin a; PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures 62 d1a05a_ not modelled 5.4 5 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 63 d2vzsa2 not modelled 5.4 38 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 64 d1pb1a_ not modelled 5.4 5 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases 65 c3neyC_ not modelled 5.3 23 PDB header:membrane protein Chain: C: PDB Molecule:55 kda erythrocyte membrane protein; PDBTitle: crystal structure of the kinase domain of mpp1/p55 66 c2qfyE_ not modelled 5.3 2 PDB header:oxidoreductase Chain: E: PDB Molecule:isocitrate dehydrogenase [nadp]; PDBTitle: crystal structure of saccharomyces cerevesiae mitochondrial nadp(+)-2 dependent isocitrate dehydrogenase in complex with a-ketoglutarate 67 d3e46a1 not modelled 5.3 40 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 68 d1q90r_ not modelled 5.3 26 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 69 c1q90R_ not modelled 5.3 26 PDB header:photosynthesis Chain: R: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 70 c2kncA_ not modelled 5.2 17 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 71 c2d1cB_ not modelled 5.2 7 PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: crystal structure of tt0538 protein from thermus thermophilus hb8 72 c2kjfA_ not modelled 5.2 23 PDB header:antimicrobial protein Chain: A: PDB Molecule:carnocyclin-a; PDBTitle: the solution structure of the circular bacteriocin2 carnocyclin a (ccla) 73 c2l9xA_ not modelled 5.2 14 PDB header:antimicrobial protein Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: trn- peptide of the two-component bacteriocin thuricin cd 74 c1b9uA_ not modelled 5.2 14 PDB header:hydrolase Chain: A: PDB Molecule:protein (atp synthase); PDBTitle: membrane domain of the subunit b of the e.coli atp synthase 75 c1btrA_ not modelled 5.2 16 PDB header:anion transport Chain: A: PDB Molecule:band 3 anion transport protein; PDBTitle: the solution structures of the first and second2 transmembrane-spanning segments of band 3 76 c1btqA_ not modelled 5.2 16 PDB header:anion transport Chain: A: PDB Molecule:band 3 anion transport protein; PDBTitle: the solution structures of the first and second2 transmembrane-spanning segments of band 3 77 c3p5nA_ not modelled 5.2 11 PDB header:transport protein Chain: A: PDB Molecule:riboflavin uptake protein; PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0