Email l.a.kelley@imperial.ac.uk Description P24082 Date Thu Jan 5 11:40:43 GMT 2012 Unique Job ID c4293149cc0b3a3a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2r09A_ 70.9 11 PDB header:signaling protein Chain: A: PDB Molecule:cytohesin-3; PDBTitle: crystal structure of autoinhibited form of grp1 arf gtpase exchange2 factor 2 d1nxha_ 69.1 23 Fold:Hypothetical protein MTH393 Superfamily:Hypothetical protein MTH393 Family:Hypothetical protein MTH393 3 d1re0b_ 67.6 11 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain 4 d1xsza1 67.1 13 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain 5 d1pbva_ 66.6 11 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain 6 d1ku1a_ 65.9 12 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain 7 d2r09a1 65.3 11 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain 8 d1r8se_ 63.7 11 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain 9 c2bkxB_ 58.3 24 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily 10 c1xszA_ 56.5 13 PDB header:signaling protein Chain: A: PDB Molecule:guanine nucleotide exchange protein; PDBTitle: the structure of ralf 11 d1a8ra_ 51.9 30 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 12 d1bc9a_ 43.4 13 Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain 13 c2plyB_ 43.2 19 PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. 14 c1is7F_ 43.0 50 PDB header:hydrolase/protein binding Chain: F: PDB Molecule:gtp cyclohydrolase i; PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex 15 d1wpla_ 43.0 50 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 16 c1wm9D_ 42.4 44 PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase i; PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8 17 d1wura1 42.4 44 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 18 c2kriB_ 35.8 32 PDB header:protein binding/endocytosis Chain: B: PDB Molecule:low-density lipoprotein receptor; PDBTitle: structure of a complex between domain v of beta2-2 glycoprotein i and the fourth ligand-binding module from3 ldlr determined with haddock 19 d2fcwb2 35.7 32 Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module 20 d2fcwb1 33.0 32 Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module 21 c3a7qB_ not modelled 32.9 28 PDB header:signaling protein Chain: B: PDB Molecule:low-density lipoprotein receptor-related protein 8; PDBTitle: structural basis for specific recognition of reelin by its receptors 22 c1wloA_ not modelled 30.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sufe protein; PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8 23 d1ni7a_ not modelled 30.3 20 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 24 c1f8zA_ not modelled 29.7 16 PDB header:lipid binding protein Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: nmr structure of the sixth ligand-binding module of the ldl2 receptor 25 d1f8za_ not modelled 29.7 16 Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module 26 c1d2jA_ not modelled 28.9 16 PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: ldl receptor ligand-binding module 6 27 d1ajja_ not modelled 28.3 24 Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module 28 d1n7da7 not modelled 28.1 32 Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module 29 c3a23A_ not modelled 23.2 13 PDB header:hydrolase Chain: A: PDB Molecule:putative secreted alpha-galactosidase; PDBTitle: crystal structure of beta-l-arabinopyranosidase complexed with d-2 galactose 30 c2ekwC_ not modelled 23.1 21 PDB header:contractile protein Chain: C: PDB Molecule:myosin catalytic light chain lc-1, mantle muscle; PDBTitle: the crystal structure of squid myosin s1 in the presence of2 so4 2- 31 d1j8ea_ not modelled 23.1 28 Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module 32 c4a18U_ not modelled 22.8 33 PDB header:ribosome Chain: U: PDB Molecule:rpl13; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1 33 c3u5eL_ not modelled 22.2 27 PDB header:ribosome Chain: L: PDB Molecule:60s ribosomal protein l13-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 resolution 34 d2enda_ not modelled 22.1 13 Fold:T4 endonuclease V Superfamily:T4 endonuclease V Family:T4 endonuclease V 35 c2eboB_ not modelled 21.6 14 PDB header:envelope glycoprotein Chain: B: PDB Molecule:ebola virus envelope glycoprotein; PDBTitle: core structure of gp2 from ebola virus 36 d1e7la1 not modelled 21.4 12 Fold:LEM/SAP HeH motif Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains Family:Recombination endonuclease VII, C-terminal and dimerization domains 37 d2gtln2 not modelled 21.0 24 Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module 38 c1tpgA_ not modelled 20.1 12 PDB header:plasminogen activation Chain: A: PDB Molecule:t-plasminogen activator f1-g; PDBTitle: f1-g module pair residues 1-91 (c83s) of tissue-type2 plasminogen activator (t-pa) (nmr, 298k, ph2.95,3 representative structure) 39 d2gtlm2 not modelled 18.9 24 Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module 40 c3fwcO_ not modelled 18.6 18 PDB header:cell cycle, transcription Chain: O: PDB Molecule:protein sus1; PDBTitle: sac3:sus1:cdc31 complex 41 c1ponB_ not modelled 16.1 33 PDB header:calcium-binding protein Chain: B: PDB Molecule:troponin c; PDBTitle: site iii-site iv troponin c heterodimer, nmr 42 c3qfwB_ not modelled 16.0 27 PDB header:lyase Chain: B: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase large PDBTitle: crystal structure of rubisco-like protein from rhodopseudomonas2 palustris 43 d1qwoa_ not modelled 16.0 23 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Histidine acid phosphatase 44 d1bjfa_ not modelled 15.9 18 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 45 d2gtlo2 not modelled 15.7 32 Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module 46 c1mgpA_ not modelled 15.6 12 PDB header:lipid binding protein Chain: A: PDB Molecule:hypothetical protein tm841; PDBTitle: hypothetical protein tm841 from thermotoga maritima reveals2 fatty acid binding function 47 d1mgpa_ not modelled 15.6 12 Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DegV-like 48 d1f7ea_ not modelled 15.4 13 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module 49 c1tt3A_ not modelled 15.2 39 PDB header:toxin Chain: A: PDB Molecule:omega-conotoxin mviia; PDBTitle: nmr soulution structure of omega-conotoxin [k10]mviia 50 d1g8ia_ not modelled 15.1 23 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 51 d1mzga_ not modelled 14.8 8 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 52 c3h5cB_ not modelled 14.8 28 PDB header:hydrolase inhibitor/blood clotting Chain: B: PDB Molecule:vitamin k-dependent protein z; PDBTitle: x-ray structure of protein z-protein z inhibitor complex 53 c2xzmS_ not modelled 14.6 17 PDB header:ribosome Chain: S: PDB Molecule:rps15e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 54 d1wdcc_ not modelled 14.5 12 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 55 c2xgvA_ not modelled 13.9 11 PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik) 56 c2lgpA_ not modelled 13.4 33 PDB header:protein binding Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: solution structure of la45 from ldlr 57 c3gmxB_ not modelled 13.3 35 PDB header:protein binding Chain: B: PDB Molecule:blp; PDBTitle: crystal structure of beta-lactamse inhibitory protein-like2 protein (blp) at 1.05 angstrom resolution 58 d2bbga_ not modelled 13.2 27 Fold:Amb V allergen Superfamily:Amb V allergen Family:Amb V allergen 59 d1cixa_ not modelled 12.6 46 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 60 c1g6uB_ not modelled 12.3 27 PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer 61 c3gmvX_ not modelled 12.3 26 PDB header:protein binding Chain: X: PDB Molecule:beta-lactamase inhibitory protein blip-i; PDBTitle: crystal structure of beta-lactamse inhibitory protein-i2 (blip-i) in apo form 62 c2i1pA_ not modelled 12.2 21 PDB header:ligand binding protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein PDBTitle: solution structure of the twelfth cysteine-rich ligand-2 binding repeat in rat megalin 63 c2jm4A_ not modelled 12.1 16 PDB header:signaling protein Chain: A: PDB Molecule:relaxin receptor 1; PDBTitle: the solution nmr structure of the relaxin (rxfp1) receptor2 ldla module. 64 c3pbiA_ not modelled 12.1 23 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 65 d2o8ra1 not modelled 12.0 13 Fold:Spectrin repeat-like Superfamily:PPK N-terminal domain-like Family:PPK N-terminal domain-like 66 d1whra_ not modelled 11.9 15 Fold:IF3-like Superfamily:R3H domain Family:R3H domain 67 c2k1gA_ not modelled 11.8 27 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 68 c2on3A_ not modelled 11.6 14 PDB header:lyase Chain: A: PDB Molecule:ornithine decarboxylase; PDBTitle: a structural insight into the inhibition of human and2 leishmania donovani ornithine decarboxylases by 3-aminooxy-3 1-aminopropane 69 c2fcdA_ not modelled 11.5 22 PDB header:cell cycle Chain: A: PDB Molecule:myosin light chain 1; PDBTitle: solution structure of n-lobe myosin light chain from2 saccharomices cerevisiae 70 c2xivA_ not modelled 11.3 21 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 71 c2knyA_ not modelled 11.1 32 PDB header:metal binding protein Chain: A: PDB Molecule:lrp-1, linker, apo-e; PDBTitle: fusion construct of cr17 from lrp-1 and apoe residues 130-149 72 d1bpoa1 not modelled 10.9 29 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Clathrin heavy-chain linker domain 73 c2fylB_ not modelled 10.9 23 PDB header:surface active protein Chain: B: PDB Molecule:low-density lipoprotein receptor-related protein PDBTitle: haddock model of the complex between double module of lrp,2 cr56, and first domain of receptor associated protein, rap-3 d1. 74 c2fcwB_ not modelled 10.1 32 PDB header:lipid transport/endocytosis/chaperone Chain: B: PDB Molecule:low-density lipoprotein receptor; PDBTitle: structure of a complex between the pair of the ldl receptor2 ligand-binding modules 3-4 and the receptor associated3 protein (rap). 75 d1o66a_ not modelled 9.7 28 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 76 d1odha_ not modelled 9.6 37 Fold:GCM domain Superfamily:GCM domain Family:GCM domain 77 c2iswB_ not modelled 9.5 9 PDB header:lyase Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase; PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate 78 d1dval1 not modelled 9.5 19 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module 79 d1r75a_ not modelled 9.4 26 Fold:Smp-1-like Superfamily:Smp-1-like Family:Smp-1-like 80 c2kvcA_ not modelled 9.2 23 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 81 d1k7ba_ not modelled 9.1 24 Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module 82 c3gt2A_ not modelled 9.1 13 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 83 c3i86A_ not modelled 9.1 21 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 84 d1k4ta3 not modelled 9.0 17 Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 85 c2rpbA_ not modelled 8.9 6 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical membrane protein; PDBTitle: the solution structure of membrane protein 86 d3by5a1 not modelled 8.8 12 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 87 c3by5A_ not modelled 8.8 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:cobalamin biosynthesis protein; PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58 88 c3si5X_ not modelled 8.8 38 PDB header:cell cycle Chain: X: PDB Molecule:protein casc5; PDBTitle: kinetochore-bubr1 kinase complex 89 d1ay7b_ not modelled 8.7 13 Fold:Barstar-like Superfamily:Barstar-related Family:Barstar-related 90 c2knxA_ not modelled 8.2 32 PDB header:protein binding Chain: A: PDB Molecule:prolow-density lipoprotein receptor-related protein 1; PDBTitle: solution structure of complement repeat cr17 from lrp-1 91 c2ojlB_ not modelled 8.2 27 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of q7waf1_borpa from bordetella parapertussis.2 northeast structural genomics target bpr68. 92 c3n2bD_ not modelled 7.5 17 PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. 93 c2ri0B_ not modelled 7.5 10 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans 94 c2xr9A_ not modelled 7.4 31 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) 95 d2v9va1 not modelled 7.4 71 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 96 c2npbA_ not modelled 7.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:selenoprotein w; PDBTitle: nmr solution structure of mouse selw 97 d2j8ba1 not modelled 7.2 18 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Extracellular domain of cell surface receptors 98 c1y89B_ not modelled 7.1 38 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:devb protein; PDBTitle: crystal structure of devb protein 99 c2p0gB_ not modelled 7.1 30 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:selenoprotein w-related protein; PDBTitle: crystal structure of selenoprotein w-related protein from2 vibrio cholerae. northeast structural genomics target vcr75