Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	F	D	L	L	T	V	L	F	T	R	L	D	V	E	V	N	G	F	N	G	G	V	L	N	G	V	P	S	A	Y	H	W	Y	T	E	Q	Y	G	V	K	G	P	C	G	Y	E	V	N	I	S	S	Q	G	D	N	F	I	Q
Secondary structure
SS confidence
Disorder		?	?	?	?					?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	D	F	D	T	P	W	C	Q	P	E	S	D	V	I	A	V	L	S	R	R	F	S	C	T	L	E	H	W	Y	A	E	Q	G	C	N	F	C	G	W	Q	R	Y	E	R	G	E	L	V	D	V	L	W	G	E	L	E	W	S	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Sequence		P	T	D	D	D	E	L	P	E	V	T	A	P	E	W	I	V	D	K	V	A	H	Y	G	G
Secondary structure
SS confidence
Disorder		?	?	?																			?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ijr chain A domain 1 Region: 1 - 111 Aligned: 110 Modelled: 111 Confidence: 100.0% Identity: 34% Fold: Api92-like Superfamily: Api92-like Family: Api92-like Phyre2 PDB 1ypz chain F domain 2 Region: 43 - 88 Aligned: 46 Modelled: 46 Confidence: 30.7% Identity: 15% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1v98 chain A Region: 55 - 78 Aligned: 24 Modelled: 24 Confidence: 28.8% Identity: 42% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure analysis of thioredoxin from thermus thermophilus Phyre2 PDB 1psk chain H domain 2 Region: 43 - 88 Aligned: 46 Modelled: 46 Confidence: 27.5% Identity: 17% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 2jv4 chain A Region: 44 - 78 Aligned: 35 Modelled: 35 Confidence: 25.1% Identity: 23% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis/trans isomerase; PDBTitle: structure characterisation of pina ww domain and comparison2 with other group iv ww domains, pin1 and ess1 Phyre2 PDB 3it8 chain E Region: 41 - 88 Aligned: 42 Modelled: 48 Confidence: 24.6% Identity: 24% PDB header:immune system Chain: E: PDB Molecule:2l protein; PDBTitle: crystal structure of tnf alpha complexed with a poxvirus mhc-related2 tnf binding protein Phyre2 PDB 1es0 chain B domain 1 Region: 43 - 88 Aligned: 46 Modelled: 46 Confidence: 21.6% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1xbs chain A Region: 53 - 80 Aligned: 28 Modelled: 28 Confidence: 21.6% Identity: 14% PDB header:transcription, cell cycle Chain: A: PDB Molecule:dim1-like protein; PDBTitle: crystal structure of human dim2: a dim1-like protein Phyre2 PDB 1clz chain H domain 2 Region: 43 - 88 Aligned: 46 Modelled: 46 Confidence: 19.9% Identity: 11% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1mh5 chain H domain 2 Region: 43 - 88 Aligned: 45 Modelled: 46 Confidence: 19.6% Identity: 11% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 3fon chain D Region: 43 - 88 Aligned: 46 Modelled: 46 Confidence: 19.0% Identity: 15% PDB header:immune system Chain: D: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of the class i mhc molecule h-2kwm7 with a single2 self peptide vndifeai Phyre2 PDB 2ifq chain A domain 1 Region: 54 - 80 Aligned: 27 Modelled: 27 Confidence: 18.9% Identity: 30% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Thioltransferase Phyre2 PDB 2fat chain H domain 2 Region: 43 - 88 Aligned: 46 Modelled: 46 Confidence: 18.7% Identity: 15% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1s9v chain A Region: 43 - 88 Aligned: 45 Modelled: 46 Confidence: 18.3% Identity: 18% PDB header:immune system Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dq(3) PDBTitle: crystal structure of hla-dq2 complexed with deamidated2 gliadin peptide Phyre2 PDB 3fom chain B Region: 43 - 88 Aligned: 46 Modelled: 46 Confidence: 18.0% Identity: 15% PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of the class i mhc molecule h-2kwm7 with a single2 self peptide iqqsierl Phyre2 PDB 1xwa chain A Region: 59 - 80 Aligned: 22 Modelled: 22 Confidence: 17.9% Identity: 27% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Thioltransferase Phyre2 PDB 1u58 chain A domain 1 Region: 43 - 88 Aligned: 46 Modelled: 46 Confidence: 17.7% Identity: 13% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1hxm chain B domain 2 Region: 80 - 88 Aligned: 9 Modelled: 9 Confidence: 17.3% Identity: 22% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 2vm2 chain C Region: 59 - 80 Aligned: 22 Modelled: 22 Confidence: 17.2% Identity: 27% PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin h isoform 1.; PDBTitle: crystal structure of barley thioredoxin h isoform 12 crystallized using peg as precipitant Phyre2 PDB 1tno chain I Region: 61 - 73 Aligned: 13 Modelled: 13 Confidence: 16.8% Identity: 23% PDB header:transferase Chain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b Phyre2 1 d2ijra1 2 d1ypzf2 3 c1v98A_ 4 d1pskh2 5 c2jv4A_ 6 c3it8E_ 7 d1es0b1 8 c1xbsA_ 9 d1clzh2 10 d1mh5h2 11 c3fonD_ 12 d2ifqa1 13 d2fath2 14 c1s9vA_ 15 c3fomB_ 16 d1xwaa_ 17 d1u58a1 18 d1hxmb2 19 c2vm2C_ 20 c1tnoI_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ijra1 100.0 34 Fold:Api92-like Superfamily:Api92-like Family:Api92-like 2 d1ypzf2 30.7 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 3 c1v98A_ 28.8 42 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure analysis of thioredoxin from thermus thermophilus 4 d1pskh2 27.5 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 5 c2jv4A_ 25.1 23 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis/trans isomerase; PDBTitle: structure characterisation of pina ww domain and comparison2 with other group iv ww domains, pin1 and ess1 6 c3it8E_ 24.6 24 PDB header:immune system Chain: E: PDB Molecule:2l protein; PDBTitle: crystal structure of tnf alpha complexed with a poxvirus mhc-related2 tnf binding protein 7 d1es0b1 21.6 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 8 c1xbsA_ 21.6 14 PDB header:transcription, cell cycle Chain: A: PDB Molecule:dim1-like protein; PDBTitle: crystal structure of human dim2: a dim1-like protein 9 d1clzh2 19.9 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 10 d1mh5h2 19.6 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 11 c3fonD_ 19.0 15 PDB header:immune system Chain: D: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of the class i mhc molecule h-2kwm7 with a single2 self peptide vndifeai 12 d2ifqa1 18.9 30 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 13 d2fath2 18.7 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 14 c1s9vA_ 18.3 18 PDB header:immune system Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dq(3) PDBTitle: crystal structure of hla-dq2 complexed with deamidated2 gliadin peptide 15 c3fomB_ 18.0 15 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of the class i mhc molecule h-2kwm7 with a single2 self peptide iqqsierl 16 d1xwaa_ 17.9 27 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 17 d1u58a1 17.7 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 18 d1hxmb2 17.3 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 19 c2vm2C_ 17.2 27 PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin h isoform 1.; PDBTitle: crystal structure of barley thioredoxin h isoform 12 crystallized using peg as precipitant 20 c1tnoI_ 16.8 23 PDB header:transferase Chain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b 21 c3ardB_ not modelled 16.4 24 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: ternary crystal structure of the mouse nkt tcr-cd1d-3'deoxy-alpha-2 galactosylceramide 22 c3areB_ not modelled 16.4 24 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: ternary crystal structure of the mouse nkt tcr-cd1d-4'deoxy-alpha-2 galactosylceramide 23 c3tcoA_ not modelled 16.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin (trxa-1); PDBTitle: crystallographic and spectroscopic characterization of sulfolobus2 solfataricus trxa1 provide insights into the determinants of3 thioredoxin fold stability 24 d1qgva_ not modelled 16.0 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:spliceosomal protein U5-15Kd 25 d1ep7a_ not modelled 15.8 32 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 26 d1l0ba2 not modelled 15.6 20 Fold:BRCT domain Superfamily:BRCT domain Family:BRCT domain 27 c3cxgA_ not modelled 15.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: crystal structure of plasmodium falciparum thioredoxin, pfi0790w 28 d1i5ga_ not modelled 15.5 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 29 c3na4A_ not modelled 15.2 19 PDB header:immune system Chain: A: PDB Molecule:beta-2-microglobulin; PDBTitle: d53p beta-2 microglobulin mutant 30 d1iqdb2 not modelled 15.1 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 31 c2l5lA_ not modelled 15.1 28 PDB header:transport protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of thioredoxin from bacteroides vulgatus 32 d1o8xa_ not modelled 14.9 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 33 c3ilqD_ not modelled 14.9 15 PDB header:immune system Chain: D: PDB Molecule:beta-2 microglobulin; PDBTitle: structure of mcd1d with bound glycolipid bbgl-2c from2 borrelia burgdorferi 34 c2dbcA_ not modelled 14.8 14 PDB header:signaling protein Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of the thioredoxin-like domain of2 phosducin-like protein 2(pdcl2) 35 c2f51B_ not modelled 14.6 32 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: structure of trichomonas vaginalis thioredoxin 36 d1fnga1 not modelled 14.5 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 37 d1ogae2 not modelled 14.3 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 38 c3o9wB_ not modelled 14.1 15 PDB header:immune system Chain: B: PDB Molecule:beta-2 microglobulin; PDBTitle: recognition of a glycolipid antigen by the inkt cell tcr 39 d1thxa_ not modelled 13.9 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 40 c2dj0A_ not modelled 13.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thioredoxin-related transmembrane protein 2; PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-related transmembrane protein 2 41 d2trxa_ not modelled 13.6 33 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 42 d1ro0a_ not modelled 13.6 20 Fold:Prim-pol domain Superfamily:Prim-pol domain Family:Bifunctional DNA primase/polymerase N-terminal domain 43 c3gblA_ not modelled 13.5 40 PDB header:immune system Chain: A: PDB Molecule:beta2-microglobulin; PDBTitle: crystal structure of grass carp beta2-microglobulin 44 c3pqyG_ not modelled 13.4 24 PDB header:immune system Chain: G: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of 6218 tcr in complex with the h2db-pa224 45 c3pqyB_ not modelled 13.4 24 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of 6218 tcr in complex with the h2db-pa224 46 d1gh2a_ not modelled 13.3 23 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 47 c3ul3A_ not modelled 13.3 23 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: structural insights into thioredoxin-2: a component of malaria2 parasite protein secretion machinery 48 d1i4fa1 not modelled 13.2 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 49 d1fo5a_ not modelled 12.9 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 50 c2j23A_ not modelled 12.7 30 PDB header:immune protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: cross-reactivity and crystal structure of malassezia2 sympodialis thioredoxin (mala s 13), a member of a new pan-3 allergen family 51 c2x89G_ not modelled 12.6 22 PDB header:immune system Chain: G: PDB Molecule:beta-2-microglobulin; PDBTitle: structure of the beta2_microglobulin involved in2 amyloidogenesis 52 d1c1eh2 not modelled 12.5 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 53 c2q6wD_ not modelled 12.4 17 PDB header:immune system Chain: D: PDB Molecule:hla class ii histocompatibility antigen, dr PDBTitle: the structure of hla-dra, drb3*0101 (dr52a) with bound2 platelet integrin peptide associated with fetal and3 neonatal alloimmune thrombocytopenia 54 c2vlvA_ not modelled 12.4 27 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h isoform 2.; PDBTitle: crystal structure of barley thioredoxin h isoform 2 in2 partially radiation-reduced state 55 c2i9hA_ not modelled 12.3 27 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin i; PDBTitle: nmr solution structure of the reduced form of thioredoxin 12 from yeast (trx1) 56 d1xfla_ not modelled 11.7 27 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 57 c1d9kD_ not modelled 11.4 18 PDB header:immune system Chain: D: PDB Molecule:mhc i-ak b chain (beta chain); PDBTitle: crystal structure of complex between d10 tcr and pmhc i-ak/ca 58 d1dn0b2 not modelled 11.3 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 59 c2bc4C_ not modelled 11.2 50 PDB header:immune system Chain: C: PDB Molecule:hla class ii histocompatibility antigen, dm PDBTitle: crystal structure of hla-dm 60 d2nnab1 not modelled 11.2 33 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 61 d2fwha1 not modelled 11.2 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 62 d1bfob2 not modelled 11.2 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 63 d1teth2 not modelled 11.0 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 64 d2fbjh2 not modelled 10.9 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 65 c2albA_ not modelled 10.8 23 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3; PDBTitle: nmr structure of the n-terminal domain a of the2 glycoprotein chaperone erp57 66 c2e0qA_ not modelled 10.8 25 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of k53e thioredoxin from sulfolobus2 tokodaii strain7 67 d1s9va1 not modelled 10.8 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 68 c1p4lB_ not modelled 10.7 15 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of nk receptor ly49c mutant with its mhc2 class i ligand h-2kb 69 d1je6a1 not modelled 10.6 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 70 c3d22A_ not modelled 10.6 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h-type; PDBTitle: crystal structure of a poplar thioredoxin h mutant,2 pttrxh4c61s 71 d1hyrc1 not modelled 10.5 50 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 72 c2qc7A_ not modelled 10.5 29 PDB header:chaperone Chain: A: PDB Molecule:endoplasmic reticulum protein erp29; PDBTitle: crystal structure of the protein-disulfide isomerase related chaperone2 erp29 73 c2fgxA_ not modelled 10.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3. 74 d1k8ib1 not modelled 10.4 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 75 d1kjvb_ not modelled 10.4 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 76 c3e6fB_ not modelled 10.4 15 PDB header:immune system Chain: B: PDB Molecule:beta-2 microglobulin; PDBTitle: mhc class i h-2dd heavy chain complexed with beta-22 microglobulin and a variant peptide, pa9, from the human3 immunodeficiency virus (bal) envelope glycoprotein 120 77 c2xbqB_ not modelled 10.4 27 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of reduced schistosoma mansoni2 thioredoxin pre-protein at 1.7 angstrom 78 c3hypB_ not modelled 10.3 25 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant 79 d1lk3h2 not modelled 10.3 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 80 d1kcuh2 not modelled 10.2 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 81 d1fe8h2 not modelled 10.2 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 82 d1uvqb1 not modelled 10.1 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 83 d1c12b2 not modelled 10.1 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 84 c1k8iB_ not modelled 10.1 22 PDB header:immune system Chain: B: PDB Molecule:mhc class ii h2-m beta 2 chain; PDBTitle: crystal structure of mouse h2-dm 85 c3p2aB_ not modelled 10.0 27 PDB header:oxidoreductase Chain: B: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis 86 c2pptA_ not modelled 10.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 87 d1sm3h2 not modelled 10.0 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 88 d2k4xa1 not modelled 10.0 18 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 89 d1f9ma_ not modelled 10.0 26 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 90 d1m7ta_ not modelled 9.9 27 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 91 d2h26a1 not modelled 9.9 33 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 92 d1muja1 not modelled 9.9 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 93 c3mrkB_ not modelled 9.9 20 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with afp1372 nonapeptide 94 d1u8ib2 not modelled 9.9 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 95 d1wbxa1 not modelled 9.8 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 96 c1f3jD_ not modelled 9.8 13 PDB header:immune system Chain: D: PDB Molecule:h-2 class ii histocompatibility antigen; PDBTitle: histocompatibility antigen i-ag7 97 d1de4a1 not modelled 9.8 40 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 98 c2xpgB_ not modelled 9.8 22 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of a mhc class i-peptide complex 99 c2vocA_ not modelled 9.8 35 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: thioredoxin a active site mutants form mixed disulfide2 dimers that resemble enzyme-substrate reaction3 intermediate

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0