Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	I	W	L	A	L	A	G	L	V	L	A	F	S	A	S	A	A	Q	Y	E	D	G	K	Q	Y	T	T	L	E	K	P	V	A	G	A	P	Q	V	L	E	F	F	S	F	F	C	P	H	C	Y	Q	F	E	E	V	L	H
Secondary structure
SS confidence
Disorder		?	?													?	?	?	?	?	?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	S	D	N	V	K	K	K	L	P	E	G	V	K	M	T	K	Y	H	V	N	F	M	G	G	D	L	G	K	D	L	T	Q	A	W	A	V	A	M	A	L	G	V	E	D	K	V	T	V	P	L	F	E	G	V	Q	K	T	Q	T
Secondary structure
SS confidence
Disorder																											?	?																														?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	R	S	A	S	D	I	R	D	V	F	I	N	A	G	I	K	G	E	E	Y	D	A	A	W	N	S	F	V	V	K	S	L	V	A	Q	Q	E	K	A	A	A	D	V	Q	L	R	G	V	P	A	M	F	V	N	G	K	Y	Q	L
Secondary structure
SS confidence
Disorder		?	?																																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Sequence		N	P	Q	G	M	D	T	S	N	M	D	V	F	V	Q	Q	Y	A	D	T	V	K	Y	L	S	E	K	K
Secondary structure
SS confidence
Disorder		?		?	?	?	?	?	?	?	?																?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1fvk chain A Region: 20 - 207 Aligned: 188 Modelled: 188 Confidence: 100.0% Identity: 100% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbA-like Phyre2 PDB 3l9v chain E Region: 27 - 205 Aligned: 178 Modelled: 179 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga Phyre2 PDB 3h93 chain A Region: 17 - 208 Aligned: 181 Modelled: 186 Confidence: 100.0% Identity: 31% PDB header:transcription regulator Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of pseudomonas aeruginosa dsba Phyre2 PDB 1bed chain A Region: 20 - 208 Aligned: 180 Modelled: 189 Confidence: 100.0% Identity: 41% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbA-like Phyre2 PDB 3dvw chain A Region: 19 - 207 Aligned: 177 Modelled: 177 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis Phyre2 PDB 3hd5 chain A Region: 23 - 207 Aligned: 175 Modelled: 182 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis Phyre2 PDB 2rem chain B Region: 21 - 207 Aligned: 173 Modelled: 178 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: B: PDB Molecule:disulfide oxidoreductase; PDBTitle: crystal structure of oxidoreductase dsba from xylella2 fastidiosa Phyre2 PDB 3feu chain A Region: 20 - 207 Aligned: 178 Modelled: 182 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri Phyre2 PDB 3c7m chain B Region: 22 - 207 Aligned: 177 Modelled: 185 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like; PDBTitle: crystal structure of reduced dsbl Phyre2 PDB 2znm chain A Region: 22 - 207 Aligned: 173 Modelled: 186 Confidence: 100.0% Identity: 25% PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: oxidoreductase nmdsba3 from neisseria meningitidis Phyre2 PDB 3f4t chain A Region: 33 - 207 Aligned: 173 Modelled: 175 Confidence: 100.0% Identity: 10% PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of wolbachia pipientis alpha-dsba1 c97a/c146a Phyre2 PDB 3gha chain A Region: 16 - 208 Aligned: 181 Modelled: 193 Confidence: 99.9% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond formation protein d; PDBTitle: crystal structure of etda-treated bdbd (reduced) Phyre2 PDB 3bci chain A Region: 37 - 202 Aligned: 157 Modelled: 157 Confidence: 99.9% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond protein a; PDBTitle: crystal structure of staphylococcus aureus dsba Phyre2 PDB 3gyk chain C Region: 33 - 207 Aligned: 157 Modelled: 162 Confidence: 99.9% Identity: 17% PDB header:oxidoreductase Chain: C: PDB Molecule:27kda outer membrane protein; PDBTitle: the crystal structure of a thioredoxin-like oxidoreductase from2 silicibacter pomeroyi dss-3 Phyre2 PDB 3gmf chain A Region: 33 - 207 Aligned: 163 Modelled: 163 Confidence: 99.9% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:protein-disulfide isomerase; PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans Phyre2 PDB 3kzq chain E Region: 38 - 205 Aligned: 163 Modelled: 168 Confidence: 99.9% Identity: 10% PDB header:structural genomics, unknown function Chain: E: PDB Molecule:putative uncharacterized protein vp2116; PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633 Phyre2 PDB 3gn3 chain B Region: 36 - 201 Aligned: 158 Modelled: 166 Confidence: 99.9% Identity: 14% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative protein-disulfide isomerase; PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution. Phyre2 PDB 2in3 chain A Region: 37 - 207 Aligned: 162 Modelled: 171 Confidence: 99.9% Identity: 13% PDB header:isomerase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative protein disulfide isomerase from2 nitrosomonas europaea Phyre2 PDB 1z6m chain A domain 1 Region: 15 - 202 Aligned: 169 Modelled: 179 Confidence: 99.9% Identity: 11% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbA-like Phyre2 PDB 3gl5 chain A Region: 39 - 202 Aligned: 159 Modelled: 163 Confidence: 99.8% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dsba oxidoreductase sco1869; PDBTitle: crystal structure of probable dsba oxidoreductase sco1869 from2 streptomyces coelicolor Phyre2 1 d1fvka_ 2 c3l9vE_ 3 c3h93A_ 4 d1beda_ 5 c3dvwA_ 6 c3hd5A_ 7 c2remB_ 8 c3feuA_ 9 c3c7mB_ 10 c2znmA_ 11 c3f4tA_ 12 c3ghaA_ 13 c3bciA_ 14 c3gykC_ 15 c3gmfA_ 16 c3kzqE_ 17 c3gn3B_ 18 c2in3A_ 19 d1z6ma1 20 c3gl5A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1fvka_ 100.0 100 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 2 c3l9vE_ 100.0 32 PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga 3 c3h93A_ 100.0 31 PDB header:transcription regulator Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of pseudomonas aeruginosa dsba 4 d1beda_ 100.0 41 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 5 c3dvwA_ 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis 6 c3hd5A_ 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis 7 c2remB_ 100.0 24 PDB header:oxidoreductase Chain: B: PDB Molecule:disulfide oxidoreductase; PDBTitle: crystal structure of oxidoreductase dsba from xylella2 fastidiosa 8 c3feuA_ 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri 9 c3c7mB_ 100.0 27 PDB header:oxidoreductase Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like; PDBTitle: crystal structure of reduced dsbl 10 c2znmA_ 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: oxidoreductase nmdsba3 from neisseria meningitidis 11 c3f4tA_ 100.0 10 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of wolbachia pipientis alpha-dsba1 c97a/c146a 12 c3ghaA_ 99.9 22 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond formation protein d; PDBTitle: crystal structure of etda-treated bdbd (reduced) 13 c3bciA_ 99.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond protein a; PDBTitle: crystal structure of staphylococcus aureus dsba 14 c3gykC_ 99.9 17 PDB header:oxidoreductase Chain: C: PDB Molecule:27kda outer membrane protein; PDBTitle: the crystal structure of a thioredoxin-like oxidoreductase from2 silicibacter pomeroyi dss-3 15 c3gmfA_ 99.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:protein-disulfide isomerase; PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans 16 c3kzqE_ 99.9 10 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:putative uncharacterized protein vp2116; PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633 17 c3gn3B_ 99.9 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative protein-disulfide isomerase; PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution. 18 c2in3A_ 99.9 13 PDB header:isomerase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative protein disulfide isomerase from2 nitrosomonas europaea 19 d1z6ma1 99.9 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 20 c3gl5A_ 99.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dsba oxidoreductase sco1869; PDBTitle: crystal structure of probable dsba oxidoreductase sco1869 from2 streptomyces coelicolor 21 d1un2a_ not modelled 99.8 97 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 22 c2imeA_ not modelled 99.8 17 PDB header:transferase Chain: A: PDB Molecule:2-hydroxychromene-2-carboxylate isomerase; PDBTitle: 2-hydroxychromene-2-carboxylate isomerase: a kappa class glutathione-2 s-transferase from pseudomonas putida 23 c3fz5C_ not modelled 99.8 13 PDB header:isomerase Chain: C: PDB Molecule:possible 2-hydroxychromene-2-carboxylate isomerase; PDBTitle: crystal structure of possible 2-hydroxychromene-2-carboxylate2 isomerase from rhodobacter sphaeroides 24 d1r4wa_ not modelled 99.7 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 25 d1v58a1 not modelled 99.7 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 26 d1eeja1 not modelled 99.7 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 27 c1yzxB_ not modelled 99.7 16 PDB header:transferase Chain: B: PDB Molecule:glutathione s-transferase kappa 1; PDBTitle: crystal structure of human kappa class glutathione2 transferase 28 d1t3ba1 not modelled 99.7 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 29 c3gv1A_ not modelled 99.6 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae 30 c1v57A_ not modelled 99.6 17 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg; PDBTitle: crystal structure of the disulfide bond isomerase dsbg 31 c1jzdA_ not modelled 99.6 14 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex 32 c1t3bA_ not modelled 99.6 13 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 33 c2l57A_ not modelled 98.4 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of an uncharacterized thioredoin-like protein from2 clostridium perfringens 34 d1j08a2 not modelled 98.3 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 35 c1v98A_ not modelled 98.2 21 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure analysis of thioredoxin from thermus thermophilus 36 c3emxB_ not modelled 98.2 18 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from aeropyrum pernix 37 c3p2aB_ not modelled 98.2 20 PDB header:oxidoreductase Chain: B: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis 38 c2l5lA_ not modelled 98.2 21 PDB header:transport protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of thioredoxin from bacteroides vulgatus 39 c2pptA_ not modelled 98.1 24 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 40 d1v9wa_ not modelled 98.1 23 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Txnl5-like 41 c3hypB_ not modelled 98.1 29 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant 42 c1zypB_ not modelled 98.1 31 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: synchrotron reduced form of the n-terminal domain of2 salmonella typhimurium ahpf 43 c2ju5A_ not modelled 98.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin disulfide isomerase; PDBTitle: dsbh oxidoreductase 44 d1a8la2 not modelled 98.1 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 45 c2l6dA_ not modelled 98.1 24 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form 46 c3p2aA_ not modelled 98.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis 47 c3dxbE_ not modelled 98.0 25 PDB header:splicing, transcription Chain: E: PDB Molecule:thioredoxin n-terminally fused to puf60(uhm); PDBTitle: structure of the uhm domain of puf60 fused to thioredoxin 48 d1dbya_ not modelled 98.0 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 49 d1zmaa1 not modelled 98.0 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 50 c3gnjD_ not modelled 98.0 25 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:thioredoxin domain protein; PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb 51 c3ul3A_ not modelled 98.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: structural insights into thioredoxin-2: a component of malaria2 parasite protein secretion machinery 52 d2fwha1 not modelled 98.0 23 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 53 d1nhoa_ not modelled 97.9 27 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 54 d1thxa_ not modelled 97.9 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 55 c1t00A_ not modelled 97.9 21 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: the structure of thioredoxin from s. coelicolor 56 c2hyxA_ not modelled 97.9 17 PDB header:unknown function Chain: A: PDB Molecule:protein dipz; PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis 57 c2r2jA_ not modelled 97.9 16 PDB header:chaperone Chain: A: PDB Molecule:thioredoxin domain-containing protein 4; PDBTitle: crystal structure of human erp44 58 c2hlsB_ not modelled 97.9 26 PDB header:oxidoreductase Chain: B: PDB Molecule:protein disulfide oxidoreductase; PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aeropyrum pernix k1 59 c2i4aA_ not modelled 97.9 24 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from the acidophile2 acetobacter aceti 60 d1hyua4 not modelled 97.9 26 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 61 d1woua_ not modelled 97.8 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Txnl5-like 62 d1ep7a_ not modelled 97.8 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 63 c1xbsA_ not modelled 97.8 27 PDB header:transcription, cell cycle Chain: A: PDB Molecule:dim1-like protein; PDBTitle: crystal structure of human dim2: a dim1-like protein 64 c3tcoA_ not modelled 97.8 24 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin (trxa-1); PDBTitle: crystallographic and spectroscopic characterization of sulfolobus2 solfataricus trxa1 provide insights into the determinants of3 thioredoxin fold stability 65 c2i1uA_ not modelled 97.8 22 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: mycobacterium tuberculosis thioredoxin c 66 d1gh2a_ not modelled 97.8 26 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 67 c2dj1A_ not modelled 97.8 21 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a4 68 d1xwaa_ not modelled 97.8 26 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 69 d1f9ma_ not modelled 97.8 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 70 c3hz4A_ not modelled 97.8 22 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from methanosarcina mazei 71 c2kucA_ not modelled 97.7 24 PDB header:isomerase Chain: A: PDB Molecule:putative disulphide-isomerase; PDBTitle: solution structure of a putative disulphide-isomerase from bacteroides2 thetaiotaomicron 72 c2e0qA_ not modelled 97.7 22 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of k53e thioredoxin from sulfolobus2 tokodaii strain7 73 c2vocA_ not modelled 97.7 20 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: thioredoxin a active site mutants form mixed disulfide2 dimers that resemble enzyme-substrate reaction3 intermediate 74 c1w89E_ not modelled 97.7 30 PDB header:electron transport Chain: E: PDB Molecule:thioredoxin; PDBTitle: structure of the reduced form of human thioredoxin 2 75 d1ti3a_ not modelled 97.7 27 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 76 d1r26a_ not modelled 97.7 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 77 c2yzuA_ not modelled 97.7 26 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of oxidized thioredoxin from thermus thermophilus2 hb8 78 c3dmlA_ not modelled 97.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the periplasmic thioredoxin soxs from2 paracoccus pantotrophus (reduced form) 79 c2diyA_ not modelled 97.6 33 PDB header:protein binding Chain: A: PDB Molecule:thioredoxin-like protein 2; PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-like protein 2 80 c1x5dA_ not modelled 97.6 24 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the second thioredoxin-like2 domain of human protein disulfide-isomerase a6 81 c2o7kA_ not modelled 97.6 25 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: s. aureus thioredoxin 82 d1qgva_ not modelled 97.6 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:spliceosomal protein U5-15Kd 83 c2aytB_ not modelled 97.6 14 PDB header:oxidoreductase Chain: B: PDB Molecule:glutaredoxin-like protein; PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aquifex aeolicus 84 d1j08a1 not modelled 97.6 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 85 c3qdnA_ not modelled 97.6 29 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin protein; PDBTitle: putative thioredoxin protein from salmonella typhimurium 86 d1syra_ not modelled 97.6 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 87 d1a8la1 not modelled 97.5 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 88 d1fo5a_ not modelled 97.5 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 89 c3d22A_ not modelled 97.5 20 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h-type; PDBTitle: crystal structure of a poplar thioredoxin h mutant,2 pttrxh4c61s 90 d2trxa_ not modelled 97.5 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 91 c2wz9A_ not modelled 97.5 27 PDB header:protein binding Chain: A: PDB Molecule:glutaredoxin-3; PDBTitle: crystal structure of the thioredoxin domain of human txnl2 92 d1nw2a_ not modelled 97.5 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 93 c2dizA_ not modelled 97.5 21 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin domain-containing protein 5; PDBTitle: the solution structure of the third thioredoxin domain of2 human thioredoxin domain-containing protein 5 94 c2dj2A_ not modelled 97.4 22 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a4; PDBTitle: the solution structure of the second thioredoxin domain of2 mouse protein disulfide-isomerase a4 95 d1m7ta_ not modelled 97.4 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 96 c2xbqB_ not modelled 97.4 19 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of reduced schistosoma mansoni2 thioredoxin pre-protein at 1.7 angstrom 97 c3apsA_ not modelled 97.4 20 PDB header:oxidoreductase Chain: A: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of trx4 domain of erdj5 98 d2b5xa1 not modelled 97.4 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 99 c2vlvA_ not modelled 97.4 24 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h isoform 2.; PDBTitle: crystal structure of barley thioredoxin h isoform 2 in2 partially radiation-reduced state 100 d1xfla_ not modelled 97.4 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 101 d1i5ga_ not modelled 97.3 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 102 c2f51B_ not modelled 97.3 23 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: structure of trichomonas vaginalis thioredoxin 103 c3f9uA_ not modelled 97.3 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein; PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis 104 c3cxgA_ not modelled 97.3 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: crystal structure of plasmodium falciparum thioredoxin, pfi0790w 105 c3f8uA_ not modelled 97.3 19 PDB header:immune system/isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3erp57; PDBTitle: tapasin/erp57 heterodimer 106 c2vimA_ not modelled 97.3 26 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: x-ray structure of fasciola hepatica thioredoxin 107 c2oe0B_ not modelled 97.2 22 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin-3; PDBTitle: crystal structure of mitochondrial thioredoxin 3 from2 saccharomyces cerevisiae 108 c2vm2C_ not modelled 97.2 24 PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin h isoform 1.; PDBTitle: crystal structure of barley thioredoxin h isoform 12 crystallized using peg as precipitant 109 d2cvba1 not modelled 97.2 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 110 c2j23A_ not modelled 97.2 26 PDB header:immune protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: cross-reactivity and crystal structure of malassezia2 sympodialis thioredoxin (mala s 13), a member of a new pan-3 allergen family 111 d1o73a_ not modelled 97.2 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 112 c1j08A_ not modelled 97.2 18 PDB header:isomerase Chain: A: PDB Molecule:glutaredoxin-like protein; PDBTitle: crystal structure of glutaredoxin-like protein from2 pyrococcus horikoshii 113 c3kh7A_ not modelled 97.2 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of the periplasmic soluble domain of reduced ccmg2 from pseudomonas aeruginosa 114 c2ywiA_ not modelled 97.2 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of uncharacterized conserved protein from2 geobacillus kaustophilus 115 d1knga_ not modelled 97.2 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 116 d1z5ye1 not modelled 97.1 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 117 d1fb6a_ not modelled 97.1 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 118 c2b1kA_ not modelled 97.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of e. coli ccmg protein 119 c2qsiB_ not modelled 97.1 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg; PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009 120 c2fgxA_ not modelled 97.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0