Secondary structure and disorder prediction

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Sequence		M	S	K	K	L	I	A	L	C	A	C	P	M	G	L	A	H	T	F	M	A	A	Q	A	L	E	E	A	A	V	E	A	G	Y	E	V	K	I	E	T	Q	G	A	D	G	I	Q	N	R	L	T	A	Q	D	I	A	E	A	T	I
Secondary structure
SS confidence
Disorder		?	?	?	?																																								?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Sequence		I	I	H	S	V	A	V	T	P	E	D	N	E	R	F	E	S	R	D	V	Y	E	I	T	L	Q	D	A	I	K	N	A	A	G	I	I	K	E	I	E	E	M	I	A	S	E	Q	Q
Secondary structure
SS confidence
Disorder													?	?	?	?																												?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kyr chain A Region: 1 - 108 Aligned: 108 Modelled: 108 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 Phyre2 PDB 2r48 chain A domain 1 Region: 4 - 101 Aligned: 97 Modelled: 98 Confidence: 100.0% Identity: 36% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Fructose specific IIB subunit-like Phyre2 PDB 2r4q chain A domain 1 Region: 4 - 101 Aligned: 95 Modelled: 96 Confidence: 100.0% Identity: 40% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Fructose specific IIB subunit-like Phyre2 PDB 1tvm chain A Region: 2 - 103 Aligned: 93 Modelled: 102 Confidence: 97.6% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system Phyre2 PDB 3czc chain A Region: 7 - 103 Aligned: 88 Modelled: 97 Confidence: 96.6% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans Phyre2 PDB 2l2q chain A Region: 11 - 107 Aligned: 90 Modelled: 97 Confidence: 96.5% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi Phyre2 PDB 2a5l chain A domain 1 Region: 2 - 65 Aligned: 62 Modelled: 64 Confidence: 96.5% Identity: 18% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 1iib chain A Region: 2 - 107 Aligned: 98 Modelled: 106 Confidence: 96.4% Identity: 15% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Lactose/Cellobiose specific IIB subunit Phyre2 PDB 1vkr chain A Region: 3 - 102 Aligned: 91 Modelled: 100 Confidence: 96.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii Phyre2 PDB 1vkr chain A Region: 3 - 102 Aligned: 91 Modelled: 100 Confidence: 96.0% Identity: 16% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Lactose/Cellobiose specific IIB subunit Phyre2 PDB 3nbm chain A Region: 3 - 101 Aligned: 92 Modelled: 99 Confidence: 95.8% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. Phyre2 PDB 1ydg chain A Region: 4 - 65 Aligned: 60 Modelled: 62 Confidence: 94.9% Identity: 30% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 1ycg chain A domain 1 Region: 2 - 67 Aligned: 62 Modelled: 66 Confidence: 94.3% Identity: 21% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2ark chain A domain 1 Region: 4 - 65 Aligned: 54 Modelled: 62 Confidence: 93.8% Identity: 22% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 3fni chain A Region: 2 - 65 Aligned: 61 Modelled: 63 Confidence: 90.5% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a Phyre2 PDB 3klb chain A Region: 1 - 81 Aligned: 79 Modelled: 81 Confidence: 89.7% Identity: 19% PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution Phyre2 PDB 1vme chain A domain 1 Region: 2 - 65 Aligned: 62 Modelled: 64 Confidence: 89.2% Identity: 11% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 3d7n chain A Region: 2 - 65 Aligned: 57 Modelled: 64 Confidence: 88.9% Identity: 23% PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens Phyre2 PDB 1e5d chain A domain 1 Region: 2 - 65 Aligned: 60 Modelled: 64 Confidence: 88.6% Identity: 20% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1d4a chain A Region: 1 - 65 Aligned: 65 Modelled: 65 Confidence: 86.7% Identity: 15% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Quinone reductase Phyre2 1 c2kyrA_ 2 d2r48a1 3 d2r4qa1 4 c1tvmA_ 5 c3czcA_ 6 c2l2qA_ 7 d2a5la1 8 d1iiba_ 9 c1vkrA_ 10 d1vkra_ 11 c3nbmA_ 12 d1ydga_ 13 d1ycga1 14 d2arka1 15 c3fniA_ 16 c3klbA_ 17 d1vmea1 18 c3d7nA_ 19 d1e5da1 20 d1d4aa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kyrA_ 100.0 100 PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 2 d2r48a1 100.0 36 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 3 d2r4qa1 100.0 40 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 4 c1tvmA_ 97.6 15 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 5 c3czcA_ 96.6 16 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 6 c2l2qA_ 96.5 13 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 7 d2a5la1 96.5 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 8 d1iiba_ 96.4 15 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 9 c1vkrA_ 96.0 16 PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii 10 d1vkra_ 96.0 16 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit 11 c3nbmA_ 95.8 16 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae. 12 d1ydga_ 94.9 30 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 13 d1ycga1 94.3 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 14 d2arka1 93.8 22 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 15 c3fniA_ 90.5 15 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 16 c3klbA_ 89.7 19 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 17 d1vmea1 89.2 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 18 c3d7nA_ 88.9 23 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 19 d1e5da1 88.6 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 20 d1d4aa_ 86.7 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 21 c3p0rA_ not modelled 86.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:azoreductase; PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne 22 c3b6iB_ not modelled 82.5 27 PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure 23 d1qrda_ not modelled 82.2 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 24 d2qwxa1 not modelled 80.3 22 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 25 c1zggA_ not modelled 75.9 21 PDB header:hydrolase Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine- PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis 26 c3f2vA_ not modelled 72.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:general stress protein 14; PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58. 27 c3rh0A_ not modelled 71.6 10 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2 28 d1t5ba_ not modelled 67.8 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 29 c2ohiB_ not modelled 67.7 21 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 30 c2v9cA_ not modelled 67.6 27 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1; PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red. 31 c2zkiH_ not modelled 67.1 23 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 32 c1woyA_ not modelled 66.3 25 PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of methionyl trna synthetase y225f mutant2 from thermus thermophilus 33 c3fvwA_ not modelled 65.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase; PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99. 34 d1dg9a_ not modelled 61.2 13 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 35 d1dxqa_ not modelled 60.8 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 36 c1vmeB_ not modelled 56.8 13 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 37 c2q62A_ not modelled 55.8 10 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 38 c2gi4A_ not modelled 52.5 29 PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni. 39 c3jviA_ not modelled 51.0 12 PDB header:hydrolase Chain: A: PDB Molecule:protein tyrosine phosphatase; PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica 40 d1t0ba_ not modelled 47.9 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like 41 c3snoA_ not modelled 46.9 23 PDB header:transferase Chain: A: PDB Molecule:hypothetical aminotransferase; PDBTitle: crystal structure of a hypothetical aminotransferase (ncgl2491) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.60 a resolution 42 d1oboa_ not modelled 43.7 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 43 d1sqsa_ not modelled 43.2 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 44 c3rpeA_ not modelled 41.8 22 PDB header:oxidoreductase Chain: A: PDB Molecule:modulator of drug activity b; PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92. 45 c3lcmB_ not modelled 40.9 13 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159 46 d1acoa2 not modelled 37.3 14 Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain 47 d1qzua_ not modelled 36.3 19 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 48 c3edoA_ not modelled 36.2 19 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 49 c3k9cA_ not modelled 35.6 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species. 50 d1ja1a2 not modelled 34.4 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 51 c3cgiD_ not modelled 33.5 18 PDB header:unknown function Chain: D: PDB Molecule:propanediol utilization protein pduu; PDBTitle: crystal structure of the pduu shell protein from the pdu2 microcompartment 52 c2wc1A_ not modelled 32.2 18 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a 53 d2z98a1 not modelled 31.6 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 54 d1rtta_ not modelled 31.3 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 55 c5acnA_ not modelled 31.2 14 PDB header:lyase(carbon-oxygen) Chain: A: PDB Molecule:aconitase; PDBTitle: structure of activated aconitase. formation of the (4fe-4s)2 cluster in the crystal 56 d1s1ma1 not modelled 31.1 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 57 c2q9uB_ not modelled 30.6 20 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 58 c2hpvA_ not modelled 29.6 21 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase; PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis 59 d1iloa_ not modelled 27.5 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 60 d1t9ba1 not modelled 27.2 19 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 61 c3hrlA_ not modelled 26.2 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:endonuclease-like protein; PDBTitle: crystal structure of a putative endonuclease-like protein (ngo0050)2 from neisseria gonorrhoeae 62 d1tjya_ not modelled 25.7 14 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 63 d1rlia_ not modelled 22.9 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 64 c3h9gA_ not modelled 22.2 11 PDB header:transferase/antibiotic Chain: A: PDB Molecule:mccb protein; PDBTitle: crystal structure of e. coli mccb + mcca-n7isoasn 65 c3f6sI_ not modelled 22.2 24 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 66 c3ia0c_ not modelled 22.1 8 PDB header:structural protein Chain: C: PDB Molecule:ethanolamine utilization protein euts; PDBTitle: ethanolamine utilization microcompartment shell subunit,2 euts-g39v mutant 67 d1b1ca_ not modelled 21.7 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 68 c2fzvC_ not modelled 21.2 10 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 69 d1d1qa_ not modelled 21.2 19 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 70 d1gsaa1 not modelled 20.8 28 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Prokaryotic glutathione synthetase, N-terminal domain 71 c3cswB_ not modelled 20.8 9 PDB header:transferase Chain: B: PDB Molecule:putative branched-chain-amino-acid aminotransferase; PDBTitle: crystal structure of a putative branched-chain amino acid2 aminotransferase (tm0831) from thermotoga maritima at 2.15 a3 resolution 72 c2hjrK_ not modelled 20.3 22 PDB header:oxidoreductase Chain: K: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of cryptosporidium parvum malate2 dehydrogenase 73 d2b3ya2 not modelled 20.3 30 Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain 74 d5nula_ not modelled 20.2 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 75 c3djeA_ not modelled 20.2 17 PDB header:oxidoreductase Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase; PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa 76 d1h05a_ not modelled 20.0 18 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 77 d1gqoa_ not modelled 19.3 13 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 78 c3chgB_ not modelled 19.1 36 PDB header:ligand binding protein Chain: B: PDB Molecule:glycine betaine-binding protein; PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa 79 d1vkna1 not modelled 18.9 0 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 80 c3t38B_ not modelled 18.4 16 PDB header:oxidoreductase Chain: B: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum thioredoxin-dependent arsenate reductase2 cg_arsc1' 81 c3kydB_ not modelled 18.3 8 PDB header:ligase Chain: B: PDB Molecule:sumo-activating enzyme subunit 2; PDBTitle: human sumo e1~sumo1-amp tetrahedral intermediate mimic 82 c2b3yB_ not modelled 17.9 27 PDB header:lyase Chain: B: PDB Molecule:iron-responsive element binding protein 1; PDBTitle: structure of a monoclinic crystal form of human cytosolic aconitase2 (irp1) 83 d1jw9b_ not modelled 17.9 14 Fold:Activating enzymes of the ubiquitin-like proteins Superfamily:Activating enzymes of the ubiquitin-like proteins Family:Molybdenum cofactor biosynthesis protein MoeB 84 d1gtza_ not modelled 17.8 16 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 85 d1jf8a_ not modelled 17.6 8 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 86 c1ychD_ not modelled 17.5 20 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 87 d2f1da1 not modelled 17.5 28 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Imidazole glycerol phosphate dehydratase 88 c3k1yE_ not modelled 17.1 19 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 89 d1rqga2 not modelled 17.0 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 90 c1y8qD_ not modelled 16.5 8 PDB header:ligase Chain: D: PDB Molecule:ubiquitin-like 2 activating enzyme e1b; PDBTitle: sumo e1 activating enzyme sae1-sae2-mg-atp complex 91 d2fz5a1 not modelled 16.2 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 92 c3lwzC_ not modelled 16.1 16 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis 93 c1zj8B_ not modelled 15.7 25 PDB header:oxidoreductase Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira; PDBTitle: structure of mycobacterium tuberculosis nira protein 94 c3kzqE_ not modelled 15.6 17 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:putative uncharacterized protein vp2116; PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633 95 d2fzva1 not modelled 15.4 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 96 d1uqra_ not modelled 15.1 21 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 97 c3n8kG_ not modelled 15.1 18 PDB header:lyase Chain: G: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid 98 c3sp1B_ not modelled 14.9 27 PDB header:ligase Chain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: crystal structure of cysteinyl-trna synthetase (cyss) from borrelia2 burgdorferi 99 d5pnta_ not modelled 14.8 15 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0