Email l.a.kelley@imperial.ac.uk Description P52123 Date Thu Jan 5 12:05:26 GMT 2012 Unique Job ID b91fbfabd36fc25f

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2k19A_ 29.8 22 PDB header:antimicrobial protein Chain: A: PDB Molecule:putative piscicolin 126 immunity protein; PDBTitle: nmr solution structure of pisi 2 c3rruA_ 27.0 16 PDB header:signaling protein Chain: A: PDB Molecule:tom1l1 protein; PDBTitle: x-ray crystal structure of the vhs domain of human tom1-like protein,2 northeast structural genomics consortium target hr3050e 3 d1mhqa_ 26.9 18 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 4 d1ujka_ 26.1 20 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 5 d1wh4a_ 24.3 27 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 6 d1dvpa1 23.7 8 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 7 c1iqrA_ 23.7 17 PDB header:lyase Chain: A: PDB Molecule:photolyase; PDBTitle: crystal structure of dna photolyase from thermus2 thermophilus 8 d1elka_ 21.4 21 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 9 c1x5bA_ 19.7 25 PDB header:protein binding Chain: A: PDB Molecule:signal transducing adaptor molecule 2; PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2 10 d1u3da1 18.6 12 Fold:Cryptochrome/photolyase FAD-binding domain Superfamily:Cryptochrome/photolyase FAD-binding domain Family:Cryptochrome/photolyase FAD-binding domain 11 d1dnpa1 18.2 12 Fold:Cryptochrome/photolyase FAD-binding domain Superfamily:Cryptochrome/photolyase FAD-binding domain Family:Cryptochrome/photolyase FAD-binding domain 12 c3fefB_ 17.1 21 PDB header:hydrolase Chain: B: PDB Molecule:putative glucosidase lpld; PDBTitle: crystal structure of putative glucosidase lpld from2 bacillus subtilis 13 d2bvca2 16.4 43 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Glutamine synthetase catalytic domain 14 c3lo0A_ 15.5 20 PDB header:hydrolase Chain: A: PDB Molecule:inorganic pyrophosphatase; PDBTitle: crystal structure of inorganic pyrophosphatase from2 ehrlichia chaffeensis 15 c3nj2B_ 15.5 6 PDB header:unknown function Chain: B: PDB Molecule:duf269-containing protein; PDBTitle: crystal structure of cce_0566 from the cyanobacterium cyanothece2 51142, a protein associated with nitrogen fixation from the duf2693 family 16 c2jqeA_ 15.3 56 PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain 17 d2ffha2 15.1 56 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 18 d1qb2a_ 14.8 56 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 19 c2j4dA_ 12.7 16 PDB header:dna-binding protein Chain: A: PDB Molecule:cryptochrome dash; PDBTitle: cryptochrome 3 from arabidopsis thaliana 20 c3fvyA_ 12.1 24 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl-peptidase 3; PDBTitle: crystal structure of human dipeptidyl peptidase iii 21 d1w7pd1 not modelled 12.1 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 22 d1v66a_ not modelled 12.1 20 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 23 d2ebfx1 not modelled 11.5 7 Fold:PMT central region-like Superfamily:PMT central region-like Family:PMT central region-like 24 c2gjhA_ not modelled 11.4 50 PDB header:de novo protein Chain: A: PDB Molecule:designed protein; PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7) 25 c1dvpA_ not modelled 11.3 8 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 26 c1u3cA_ not modelled 11.1 11 PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome 1 apoprotein; PDBTitle: crystal structure of the phr domain of cryptochrome 1 from2 arabidopsis thaliana 27 d1r76a_ not modelled 11.0 26 Fold:alpha/alpha toroid Superfamily:Family 10 polysaccharide lyase Family:Family 10 polysaccharide lyase 28 c1oefA_ not modelled 10.8 33 PDB header:apolipoprotein Chain: A: PDB Molecule:apolipoprotein e; PDBTitle: peptide of human apoe residues 263-286, nmr, 5 structures2 at ph 4.8, 37 degrees celsius and peptide:sds mole ratio3 of 1:90 29 d2h80a1 not modelled 10.5 22 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Variant SAM domain 30 d2dkya1 not modelled 10.5 33 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Variant SAM domain 31 c1dnpA_ not modelled 10.4 12 PDB header:lyase (carbon-carbon) Chain: A: PDB Molecule:dna photolyase; PDBTitle: structure of deoxyribodipyrimidine photolyase 32 d1u5tb1 not modelled 10.3 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 33 c2qqoB_ not modelled 10.1 44 PDB header:signaling protein Chain: B: PDB Molecule:neuropilin-2; PDBTitle: crystal structure of the a2b1b2 domains from human neuropilin-2 34 d1vyva2 not modelled 9.8 37 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 35 d1qzxa2 not modelled 9.3 50 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 36 d2sh1a_ not modelled 9.0 42 Fold:Defensin-like Superfamily:Defensin-like Family:Defensin 37 c3s90D_ not modelled 8.9 55 PDB header:cell adhesion Chain: D: PDB Molecule:talin-1; PDBTitle: human vinculin head domain vh1 (residues 1-252) in complex with murine2 talin (vbs33; residues 1512-1546) 38 c1htoB_ not modelled 8.6 43 PDB header:ligase Chain: B: PDB Molecule:glutamine synthetase; PDBTitle: crystallographic structure of a relaxed glutamine synthetase from2 mycobacterium tuberculosis 39 c3g7pA_ not modelled 8.4 17 PDB header:unknown function Chain: A: PDB Molecule:nitrogen fixation protein; PDBTitle: crystal structure of a nifx-associated protein of unknown function2 (afe_1514) from acidithiobacillus ferrooxidans atcc at 2.00 a3 resolution 40 d1f52a2 not modelled 8.2 33 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Glutamine synthetase catalytic domain 41 c1s6yA_ not modelled 8.1 19 PDB header:hydrolase Chain: A: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: 2.3a crystal structure of phospho-beta-glucosidase 42 c2qqmA_ not modelled 8.1 29 PDB header:signaling protein Chain: A: PDB Molecule:neuropilin-1; PDBTitle: crystal structure of the a2b1b2 domains from human neuropilin-1 43 c2jxfA_ not modelled 8.0 27 PDB header:viral protein, membrane protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: the solution structure of hcv ns4b(40-69) 44 c1np7A_ not modelled 7.9 14 PDB header:lyase Chain: A: PDB Molecule:dna photolyase; PDBTitle: crystal structure analysis of synechocystis sp. pcc6803 cryptochrome 45 c1u8xX_ not modelled 7.8 15 PDB header:hydrolase Chain: X: PDB Molecule:maltose-6'-phosphate glucosidase; PDBTitle: crystal structure of glva from bacillus subtilis, a metal-requiring,2 nad-dependent 6-phospho-alpha-glucosidase 46 c2iunD_ not modelled 7.8 30 PDB header:viral protein Chain: D: PDB Molecule:avian adenovirus celo long fibre; PDBTitle: structure of the c-terminal head domain of the avian2 adenovirus celo long fibre (p21 crystal form) 47 c3c8zB_ not modelled 7.7 23 PDB header:ligase Chain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: the 1.6 a crystal structure of mshc: the rate limiting2 enzyme in the mycothiol biosynthetic pathway 48 c1fpyE_ not modelled 7.5 33 PDB header:ligase Chain: E: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of glutamine synthetase from salmonella2 typhimurium with inhibitor phosphinothricin 49 c2hfzA_ not modelled 7.4 16 PDB header:transferase Chain: A: PDB Molecule:rna-directed rna polymerase(ns5); PDBTitle: crystal structure of rna dependent rna polymerase domain2 from west nile virus 50 c1zzpA_ not modelled 7.4 11 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase abl1; PDBTitle: solution structure of the f-actin binding domain of bcr-2 abl/c-abl 51 c1vjtA_ not modelled 7.4 12 PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution 52 d1np7a1 not modelled 7.1 14 Fold:Cryptochrome/photolyase FAD-binding domain Superfamily:Cryptochrome/photolyase FAD-binding domain Family:Cryptochrome/photolyase FAD-binding domain 53 c2eodA_ not modelled 7.0 38 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor-associated factor 4; PDBTitle: solution structure of traf-type zinc finger domains (190-2 248) from human tnf receptor-associated factor 4 54 c3zxpC_ not modelled 6.9 15 PDB header:protein transport Chain: C: PDB Molecule:bro1 domain-containing protein brox; PDBTitle: structural and functional analyses of the bro1 domain protein brox 55 d1enwa_ not modelled 6.8 10 Fold:RuvA C-terminal domain-like Superfamily:Elongation factor TFIIS domain 2 Family:Elongation factor TFIIS domain 2 56 c3r9mA_ not modelled 6.8 15 PDB header:protein binding Chain: A: PDB Molecule:bro1 domain-containing protein brox; PDBTitle: crystal structure of the brox bro1 domain 57 c1tezB_ not modelled 6.8 11 PDB header:lyase/dna Chain: B: PDB Molecule:deoxyribodipyrimidine photolyase; PDBTitle: complex between dna and the dna photolyase from anacystis nidulans 58 c1oegA_ not modelled 6.7 37 PDB header:apolipoprotein Chain: A: PDB Molecule:apolipoprotein e; PDBTitle: peptide of human apoe residues 267-289, nmr, 5 structures2 at ph 6.0, 37 degrees celsius and peptide:sds mole ratio3 of 1:90 59 d1t3la2 not modelled 6.6 53 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 60 d1t0hb_ not modelled 6.5 47 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 61 d1vyua2 not modelled 6.5 47 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 62 d1aq0a_ not modelled 6.4 33 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 63 c3juaB_ not modelled 6.3 16 PDB header:transcription Chain: B: PDB Molecule:65 kda yes-associated protein; PDBTitle: structural basis of yap recognition by tead4 in the hippo pathway 64 c2entA_ not modelled 6.0 35 PDB header:transcription Chain: A: PDB Molecule:krueppel-like factor 15; PDBTitle: solution structure of the second c2h2-type zinc finger2 domain from human krueppel-like factor 15 65 d1bvp11 not modelled 5.9 23 Fold:A virus capsid protein alpha-helical domain Superfamily:A virus capsid protein alpha-helical domain Family:Orbivirus capsid 66 c1up6F_ not modelled 5.9 22 PDB header:hydrolase Chain: F: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: structure of the 6-phospho-beta glucosidase from thermotoga2 maritima at 2.55 angstrom resolution in the tetragonal form3 with manganese, nad+ and glucose-6-phosphate 67 d1oqva_ not modelled 5.7 31 Fold:Pili subunits Superfamily:Pili subunits Family:TcpA-like pilin 68 d2bo9b1 not modelled 5.6 17 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Latexin-like 69 c3mkqB_ not modelled 5.6 12 PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat 70 c2kk1A_ not modelled 5.4 21 PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase abl2; PDBTitle: solution structure of c-terminal domain of tyrosine-protein2 kinase abl2 from homo sapiens, northeast structural3 genomics consortium (nesg) target hr5537a 71 c3cskA_ not modelled 5.2 25 PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidyl-peptidase 3; PDBTitle: structure of dpp iii from saccharomyces cerevisiae 72 d1hn6a_ not modelled 5.2 30 Fold:Apical membrane antigen 1 Superfamily:Apical membrane antigen 1 Family:Apical membrane antigen 1 73 c2v0xB_ not modelled 5.2 21 PDB header:cell cycle Chain: B: PDB Molecule:lamina-associated polypeptide 2 isoforms PDBTitle: the dimerization domain of lap2alpha 74 c3fkyD_ not modelled 5.2 14 PDB header:ligase Chain: D: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the glutamine synthetase gln1deltan182 from the yeast saccharomyces cerevisiae 75 c2w2uA_ not modelled 5.1 27 PDB header:hydrolase/transport Chain: A: PDB Molecule:hypothetical p60 katanin; PDBTitle: structural insight into the interaction between archaeal2 escrt-iii and aaa-atpase 76 d1czsa_ not modelled 5.0 42 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) 77 c2l5rA_ not modelled 5.0 50 PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide alyteserin-1c; PDBTitle: conformational and membrane interactins studies of antimicrobial2 peptide alyteserin-1c